LOCUS       NM_152477               1799 bp    mRNA    linear   PRI 07-APR-2024
DEFINITION  Homo sapiens zinc finger protein 565 (ZNF565), transcript variant
            2, mRNA.
ACCESSION   NM_152477
VERSION     NM_152477.5
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1799)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DA473136.1, CB960081.1 and AC008848.9.
            
            On Jul 29, 2019 this sequence version replaced NM_152477.4.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1-4 encode the same isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DB030975.1, DA425245.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA1965299,
                                           SAMEA1968189 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000304116.10/ ENSP00000306869.5
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-198               DA473136.1         9-206
            199-658             CB960081.1         216-675
            659-1799            AC008848.9         18988-20128         c
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /map="19q13.12"
     gene            1..1799
                     /gene="ZNF565"
                     /note="zinc finger protein 565"
                     /db_xref="GeneID:147929"
                     /db_xref="HGNC:HGNC:26726"
                     /db_xref="MIM:614275"
     exon            1..44
                     /gene="ZNF565"
                     /inference="alignment:Splign:2.1.0"
     exon            45..118
                     /gene="ZNF565"
                     /inference="alignment:Splign:2.1.0"
     CDS             110..1609
                     /gene="ZNF565"
                     /note="isoform 1 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="zinc finger protein 565 isoform 1"
                     /protein_id="NP_689690.3"
                     /db_xref="CCDS:CCDS12491.1"
                     /db_xref="GeneID:147929"
                     /db_xref="HGNC:HGNC:26726"
                     /db_xref="MIM:614275"
                     /translation="MAQGLVTFRDVAIEFSLEEWKCLEPAQRDLYREVTLENFGHLAS
                     LGLSISKPDVVSLLEQGKEPWMIANDVTGPWCPDLESRCEKFLQKDIFEIGAFNWEIM
                     ESLKCSDLEGSDFRADWECEGQFERQVNEECYFKQVNVTYGHMPVFQHHTSHTVRQSR
                     ETGEKLMECHECGKAFSRGSHLIQHQKIHTGEKPFGCKECGKAFSRASHLVQHQRIHT
                     GEKPYDCKDCGKAFGRTSELILHQRLHTGVKPYECKECGKTFRQHSQLILHQRTHTGE
                     KPYVCKDCGKAFIRGSQLTVHRRIHTGARPYECKECGKAFRQHSQLTVHQRIHTGEKP
                     YECKECGKGFIHSSEVTRHQRIHSGEKPYECKECGKAFRQHAQLTRHQRVHTGDRPYE
                     CKDCGKAFSRSSYLIQHQRIHTGDKPYECKECGKAFIRVSQLTHHQRIHTCEKPYECR
                     ECGMAFIRSSQLTEHQRIHPGIKPYECRECGQAFILGSQLIEHYRIHTG"
     exon            119..245
                     /gene="ZNF565"
                     /inference="alignment:Splign:2.1.0"
     exon            246..341
                     /gene="ZNF565"
                     /inference="alignment:Splign:2.1.0"
     exon            342..1799
                     /gene="ZNF565"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1763..1768
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZNF565"
                     /note="hexamer: AATAAA"
     polyA_site      1790
                     /gene="ZNF565"
                     /note="major polyA site"
ORIGIN      
        1 agttagctcc gcaaggaccc ggacgcgacc aggggaggca gaaggactct gcacttgtcc
       61 aagagaagaa tccagagaaa tcagagcagg tcaaatagtt ctaaaagcca tggcccaggg
      121 actggtgaca ttcagggacg tggccataga gttctctctg gaagaatgga agtgcctgga
      181 acctgctcag agggacttgt acagggaggt gactctggag aactttggtc acttggcctc
      241 actaggactc tccatttcta agcctgatgt cgtctcctta ttggagcaag ggaaagagcc
      301 ctggatgatt gcaaatgatg tgacaggacc atggtgccca gacttggagt ccaggtgtga
      361 gaaatttcta caaaaagaca tttttgaaat cggggcattc aactgggaga taatggaaag
      421 ccttaaatgc agtgacctgg agggctccga ttttagagct gactgggaat gcgaaggcca
      481 gtttgagaga caagtcaatg aagagtgcta ttttaagcaa gtgaacgtca cctatggaca
      541 tatgcccgtg ttccagcatc acacgtctca cactgtacgt cagagcaggg agactggtga
      601 gaaactgatg gaatgtcatg aatgtgggaa agcatttagc cgtggctcac accttattca
      661 acatcagaaa attcacactg gtgaaaaacc ctttggatgt aaggaatgtg ggaaggcctt
      721 cagccgtgcc tcacaccttg ttcagcatca gagaattcac acgggtgaga aaccttatga
      781 ctgtaaggac tgtgggaagg cctttggtcg tacatcagaa cttattctac atcagagact
      841 tcatactggt gtcaaacctt atgaatgtaa agaatgtggg aagaccttta ggcagcattc
      901 acagctgatt ctgcatcaaa gaactcacac aggcgagaaa ccctacgtat gtaaagactg
      961 tggcaaggct ttcattcgtg gctcccaact cactgtgcat cggagaatcc acacaggggc
     1021 cagaccctat gagtgtaaag aatgcgggaa agcctttaga cagcactcac agctgactgt
     1081 acaccagcga atccacactg gtgagaaacc ctacgagtgt aaggaatgcg gaaagggctt
     1141 tattcacagc tcagaagtta ctcgacatca aagaattcat tctggggaga aaccctatga
     1201 gtgtaaggaa tgtgggaagg ccttcagaca gcacgcacag ctcacacgac atcagagagt
     1261 ccatactggc gacagaccct atgaatgtaa ggactgcggg aaggcattta gtcgtagctc
     1321 atacctcatt caacatcaaa gaattcatac aggtgacaaa ccctacgaat gtaaggaatg
     1381 tgggaaggcc tttattcgtg tttcacaact gactcatcat cagcgaattc acacttgtga
     1441 gaaaccctat gaatgcaggg agtgtggaat ggcctttatt cgtagttcac aacttaccga
     1501 acatcagaga attcatcctg gtatcaaacc ttacgaatgt agagagtgtg ggcaggcatt
     1561 tattcttggc tcacaactca ttgaacacta cagaattcat actggttaga aagccttgag
     1621 tgtaagggat aaagataagc ctttatgtgg agttcacatc tggctcagta ctaggtaatt
     1681 tttaatgtag tgtaattaat gtcagaaaac acctgtcact tccatcatag aacatcagaa
     1741 aactcacacc caaagaaaat taaataaatg tgggaattct ttttgcctca ctcactgtt
//
