LOCUS       NM_024772               4161 bp    mRNA    linear   PRI 04-APR-2024
DEFINITION  Homo sapiens zinc finger MYM-type containing 1 (ZMYM1), transcript
            variant 5, mRNA.
ACCESSION   NM_024772
VERSION     NM_024772.5
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4161)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL607089.16.
            
            On Nov 23, 2018 this sequence version replaced NM_024772.4.
            
            Transcript Variant: This variant (5) differs in the 5' UTR,
            compared to variant 1. Variants 1, 4, and 5 encode the same protein
            (isoform a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1803613.130621.1, BX537537.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1968540
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000359858.9/ ENSP00000352920.4
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-58                AL607089.16        60559-60616
            59-228              AL607089.16        75088-75257
            229-301             AL607089.16        76993-77065
            302-551             AL607089.16        78491-78740
            552-726             AL607089.16        85469-85643
            727-939             AL607089.16        85731-85943
            940-1093            AL607089.16        91468-91621
            1094-1234           AL607089.16        92946-93086
            1235-1278           AL607089.16        93261-93304
            1279-4161           AL607089.16        94151-97033
FEATURES             Location/Qualifiers
     source          1..4161
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
                     /map="1p34.3"
     gene            1..4161
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /note="zinc finger MYM-type containing 1"
                     /db_xref="GeneID:79830"
                     /db_xref="HGNC:HGNC:26253"
     exon            1..58
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /inference="alignment:Splign:2.1.0"
     exon            59..228
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..3561
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /note="isoform a is encoded by transcript variant 5; zinc
                     finger, MYM domain containing 1; zinc finger MYM-type
                     protein 1; zinc finger, MYM-type 1"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 1 isoform a"
                     /protein_id="NP_079048.3"
                     /db_xref="CCDS:CCDS41302.1"
                     /db_xref="GeneID:79830"
                     /db_xref="HGNC:HGNC:26253"
                     /translation="MKEPLLGGECDKAVASQLGLLDEIKTEPDNAQEYCHRQQSRTQE
                     NELKINAVFSESASQLTAGIQLSLASSGVNKMLPSVSTTAIQVSCAGCKKILQKGQTA
                     YQRKGSAQLFCSIPCITEYISSASSPVPSKRTCSNCSKDILNPKDVISVQLEDTTSCK
                     TFCSLSCLSSYEEKRKPFVTICTNSILTKCSMCQKTAIIQYEVKYQNVKHNLCSNACL
                     SKFHSANNFIMNCCENCGTYCYTSSSLSHILQMEGQSHYFNSSKSITAYKQKPAKPLI
                     SVPCKPLKPSDEMIETTSDLGKTELFCSINCFSAYSKAKMESSSVSVVSVVHDTSTEL
                     LSPKKDTTPVISNIVSLADTDVALPIMNTDVLQDTVSSVTATADVIVDLSKSSPSEPS
                     NAVASSSTEQPSVSPSSSVFSQHAIGSSTEVQKDNMKSMKISDELCHPKCTSKVQKVK
                     GKSRSIKKSCCADFECLENSKKDVAFCYSCQLFCQKYFSCGRESFATHGTSNWKKTLE
                     KFRKHEKSEMHLKSLEFWREYQFCDGAVSDDLSIHSKQIEGNKKYLKLIIENILFLGK
                     QCLPLRGNDQSVSSVNKGNFLELLEMRAKDKGEETFRLMNSQVDFYNSTQIQSDIIEI
                     IKTEMLQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLGF
                     VDTEEMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPRA
                     LYIHCYAHFLDLSIIRFCKEVKELRSALKTLSSLFNTICMSGEMLANFRNIYRLSQNK
                     TCKKHISQSCWTVHDRTLLSVIDSLPEIIETLEVIASHSSNTSFADELSHLLTLVSKF
                     EFVFCLKFLYRVLSVTGILSKELQNKTIDIFSLSSKIEAILECLSSERNDVYFKTIWD
                     GTEEICQKITCKGFKVEKPSLQKRRKIQKSVDLGNSDNMFFPTSTEEQYKINIYYQGL
                     DTILQNLKLCFSEFDYCKIKQISELLFKWNEPLNETTAKHVQEFYKLDEDIIPELRFY
                     RHYAKLNFVIDDSCINFVSLGCLFIQHGLHSNIPCLSKLLYIALSWPITSASTENSFS
                     TLPRLKTYLCNTMGQEKLTGPALMAVEQELVNKLMEPERLNEIVEKFISQMKEI"
     exon            229..301
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /inference="alignment:Splign:2.1.0"
     exon            302..551
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /inference="alignment:Splign:2.1.0"
     exon            552..726
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /inference="alignment:Splign:2.1.0"
     exon            727..939
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /inference="alignment:Splign:2.1.0"
     exon            940..1093
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /inference="alignment:Splign:2.1.0"
     exon            1094..1234
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /inference="alignment:Splign:2.1.0"
     exon            1235..1278
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /inference="alignment:Splign:2.1.0"
     exon            1279..4161
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4136..4141
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /note="hexamer: ATTAAA"
     polyA_site      4161
                     /gene="ZMYM1"
                     /gene_synonym="MYM"
                     /note="major polyA site"
ORIGIN      
        1 cgtttcgctt cgaagattgt ttcagaagcg ttgggcgggg cgtccctgag agaaattaga
       61 atctggaaac tgttcttcag gaagaaaccc attagtttgg aactggagaa ttcctttgca
      121 tcagatacta aaatgaaaga accactttta ggtggtgagt gtgacaaggc agtggcatca
      181 cagctggggc tgctagatga aattaagaca gaacccgaca atgctcaaga gtattgtcat
      241 aggcaacagt ccagaactca ggagaatgaa ctgaaaataa atgctgtgtt ttcagagagt
      301 gcttcacagt tgactgcagg cattcagctt tctctggcat catctggcgt gaataaaatg
      361 cttccttcag tttcaaccac agctattcag gtttcctgtg ctggttgtaa aaaaattctc
      421 cagaaggggc aaactgctta tcagaggaaa ggatctgctc aacttttctg ctccatacca
      481 tgcatcactg aatacatttc atctgccagt tcaccagttc cttctaagag aacttgttca
      541 aactgctcaa aagacatttt aaatccaaag gatgtgatta gtgtccagct ggaagacact
      601 acctcttgca aaactttttg cagcctatct tgtctttcat catatgaaga aaaaagaaaa
      661 ccatttgtta ccatatgtac taatagcatt ttgaccaagt gcagcatgtg ccagaagact
      721 gctattattc agtatgaagt aaaataccaa aatgtgaaac ataatctttg cagtaatgcc
      781 tgcctttcaa agtttcactc tgctaacaac ttcatcatga actgctgtga gaactgtggc
      841 acttactgtt acaccagctc tagtctgtcc cacatacttc agatggaagg acagtctcat
      901 tactttaata gttcaaagag tattacagca tataagcaga aacctgccaa accacttata
      961 tctgttcctt gcaaaccatt gaagccctca gatgaaatga ttgagactac gagtgatttg
     1021 gggaagacag agcttttctg ctctattaat tgtttctctg catacagtaa agctaagatg
     1081 gaatcttctt cagtaagtgt tgtttctgtg gtgcatgata cttcaacaga gcttctttct
     1141 ccaaagaaag atacgactcc agttataagc aatatagtgt cattggcaga caccgatgtt
     1201 gccttgccca tcatgaacac tgatgtctta caagatacag tttcttcagt aacagcaaca
     1261 gcagatgtca ttgtggatct ttctaagagt tcacctagtg aacccagtaa tgctgttgct
     1321 agtagtagta cggaacagcc aagcgtttca ccatcttcat cagtattcag tcagcatgca
     1381 attggttcca gtacagaagt acaaaaagac aatatgaaat ctatgaaaat aagtgatgaa
     1441 ctatgtcacc caaaatgtac atccaaagta caaaaagtta aaggtaaatc acgaagtatt
     1501 aaaaaatctt gttgtgcaga ttttgagtgt ttggaaaaca gtaaaaaaga tgtggcattc
     1561 tgttattcat gccagttgtt ctgccaaaaa tattttagct gtggaagaga gtcatttgca
     1621 acccacggaa cttctaattg gaaaaaaacc ctggaaaaat tcagaaagca tgaaaaaagt
     1681 gaaatgcatt tgaagtcatt ggaattttgg agagaatacc aattttgtga tggagctgtc
     1741 agtgacgatt tatctattca ttcgaaacag attgagggaa ataaaaagta cctaaagctt
     1801 ataattgaaa atattttatt tcttggaaag cagtgtttac ccttaagagg aaacgaccag
     1861 tcagtttcat ctgtgaataa aggcaatttt ttagaattgt tagaaatgag agcaaaagat
     1921 aaaggagaag aaacatttcg acttatgaat tcacaagttg acttctataa cagtacacaa
     1981 attcaaagtg atattatcga aataataaag actgaaatgt tgcaggatat tgtgaatgag
     2041 atcaatgact cctcagcatt ttcaatcata tgtgatgaga caatcaatag tgccatgaaa
     2101 gaacagcttt caatttgtgt aagataccca caaaaatcat caaaggctat cttaattaag
     2161 gaaagattct tgggttttgt tgatactgag gagatgactg ggacccactt acataggact
     2221 atcaaaactt atctgcagca aattggagtt gatatggata aaatacatgg ccaggcctat
     2281 gatagcacca ctaatttgaa gataaaattt aataaaatag cagcagaatt caagaaagaa
     2341 gaaccaagag ctttatacat acattgttat gcacactttt tggatttatc aataattagg
     2401 ttttgtaaag aagtaaaaga actccgaagt gctctaaaaa ctctcagttc tttgttcaac
     2461 actatttgta tgtctgggga aatgttggca aattttcgaa acatttatag gctaagtcaa
     2521 aacaaaacat gcaagaaaca tatatcacaa tcatgttgga cagtccatga tcgtacatta
     2581 ctatctgtga ttgacagtct tccagagatt attgaaacat tggaagttat agcaagccat
     2641 tcttcaaata caagtttcgc cgatgaattg agtcatttgc tgacattggt ttccaaattt
     2701 gaatttgtct tttgtttgaa attcctgtat cgagtgctga gtgttacagg aattctttcc
     2761 aaagagcttc aaaataaaac catagacatt ttttctttgt cttcaaaaat agaagcaatt
     2821 ttggaatgtt tatcatctga aagaaatgac gtatacttta aaacaatctg ggatggaaca
     2881 gaggaaatat gtcaaaaaat aacctgtaaa ggttttaaag ttgaaaaacc ttctcttcag
     2941 aaaagaagaa aaattcagaa atcagtagat cttggcaatt cagataatat gttttttcct
     3001 acttcaacag aagaacaata taaaattaat atctattacc aaggattaga tactatatta
     3061 caaaatttaa agttatgttt ttcggagttt gattattgca aaataaagca aatttcagaa
     3121 ctgttattta aatggaatga accattaaat gaaacaacag caaaacatgt tcaggaattt
     3181 tataaacttg atgaggacat tatcccagaa cttagatttt atcgacatta tgcaaagctt
     3241 aactttgtca tagatgatag ttgcataaac ttcgtcagtc tcggctgttt gtttattcag
     3301 catggtcttc acagtaatat tccttgtctc tcaaagctat tatatattgc tttgtcttgg
     3361 ccaattactt cagcaagtac tgagaactca ttttctaccc tgcctcgtct taagacatat
     3421 ttatgtaata ccatgggaca agagaagctt actggcccag ccctaatggc tgttgagcag
     3481 gagttggtaa ataaactaat ggagcctgaa agactcaatg aaattgtgga aaagtttatc
     3541 agtcagatga aagaaatata atacatgctc atttgaactt acctaaaaga cttgtatttc
     3601 cattgggatg ttttcatttc aaaattgttc aaaattcaaa agacacagaa cgataaacag
     3661 tgaagtctcc ttccctcctt tagaactcat tttctcttcc caaaaagtgt tatcttttcc
     3721 ttaaatatcc ctctagaggt atttttccta agtggtattg tacggtgtat actgttcttc
     3781 agcttgtctt ctctgtgtaa catatttttg agattgtccc atgtcgttac atgaagagtt
     3841 tcttgattct tggtctataa ttgcagatgt tattgtatga atgtaccata atatatttga
     3901 gcagtccctg ctgacatttt tttcctaacc ttttgctatt ataaataatg attcatttta
     3961 taacctttta tataggtcac attgcacatg agtgagttta ctgtaagctg gaaatctaaa
     4021 gttagaatta ctaggttaag atatgtgcat ttttactttt gatagatatt ggcaagttgc
     4081 catctataag gattgtgcca gtttacagtc ccacccacaa tgcatgagag tgcctattaa
     4141 atctttgtaa gtgttatcaa a
//
