LOCUS       NM_001003692             945 bp    mRNA    linear   PRI 08-JUN-2024
DEFINITION  Homo sapiens zinc finger matrin-type 5 (ZMAT5), transcript variant
            2, mRNA.
ACCESSION   NM_001003692
VERSION     NM_001003692.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Wang,V.W., Laborde,R.R., Asmann,Y.W., Li,Y., Ma,J., Eckloff,B.W.,
            Tombers,N.M., Olsen,S.M., Moore,E.J., Olsen,K.D. and Smith,D.I.
  TITLE     Search for chromosome rearrangements: new approaches toward
            discovery of novel translocations in head and neck squamous cell
            carcinoma
  JOURNAL   Head Neck 35 (6), 831-835 (2013)
   PUBMED   22807096
REFERENCE   3  (bases 1 to 945)
  AUTHORS   Kim,J.M., Lee,K.H., Jeon,Y.J., Oh,J.H., Jeong,S.Y., Song,I.S.,
            Kim,J.M., Lee,D.S. and Kim,N.S.
  TITLE     Identification of genes related to Parkinson's disease using
            expressed sequence tags
  JOURNAL   DNA Res 13 (6), 275-286 (2006)
   PUBMED   17213182
REFERENCE   4  (bases 1 to 945)
  AUTHORS   Will,C.L., Schneider,C., Hossbach,M., Urlaub,H., Rauhut,R.,
            Elbashir,S., Tuschl,T. and Luhrmann,R.
  TITLE     The human 18S U11/U12 snRNP contains a set of novel proteins not
            found in the U2-dependent spliceosome
  JOURNAL   RNA 10 (6), 929-941 (2004)
   PUBMED   15146077
REFERENCE   5  (bases 1 to 945)
  AUTHORS   Collins,J.E., Wright,C.L., Edwards,C.A., Davis,M.P., Grinham,J.A.,
            Cole,C.G., Goward,M.E., Aguado,B., Mallya,M., Mokrab,Y.,
            Huckle,E.J., Beare,D.M. and Dunham,I.
  TITLE     A genome annotation-driven approach to cloning the human ORFeome
  JOURNAL   Genome Biol 5 (10), R84 (2004)
   PUBMED   15461802
REFERENCE   6  (bases 1 to 945)
  AUTHORS   Adams,M.D., Kerlavage,A.R., Fleischmann,R.D., Fuldner,R.A.,
            Bult,C.J., Lee,N.H., Kirkness,E.F., Weinstock,K.G., Gocayne,J.D.,
            White,O. et al.
  TITLE     Initial assessment of human gene diversity and expression patterns
            based upon 83 million nucleotides of cDNA sequence
  JOURNAL   Nature 377 (6547 Suppl), 3-174 (1995)
   PUBMED   7566098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC004882.3, BU598307.1 and BC009717.1.
            
            On May 17, 2019 this sequence version replaced NM_001003692.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1 and 2 both encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC009717.1, SRR1163655.154251.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA1965299,
                                           SAMEA1966682 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000344318.4/ ENSP00000344241.3
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                AC004882.3         113587-113613       c
            28-62               BU598307.1         3-37
            63-945              BC009717.1         1-883
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="22"
                     /map="22q12.2"
     gene            1..945
                     /gene="ZMAT5"
                     /gene_synonym="SNRNP20; U11/U12-20K; ZC3H19"
                     /note="zinc finger matrin-type 5"
                     /db_xref="GeneID:55954"
                     /db_xref="HGNC:HGNC:28046"
                     /db_xref="MIM:619741"
     exon            1..136
                     /gene="ZMAT5"
                     /gene_synonym="SNRNP20; U11/U12-20K; ZC3H19"
                     /inference="alignment:Splign:2.1.0"
     exon            137..290
                     /gene="ZMAT5"
                     /gene_synonym="SNRNP20; U11/U12-20K; ZC3H19"
                     /inference="alignment:Splign:2.1.0"
     CDS             164..676
                     /gene="ZMAT5"
                     /gene_synonym="SNRNP20; U11/U12-20K; ZC3H19"
                     /note="U11/U12 snRNP 20K; U11/U12 snRNP 20 kDa protein;
                     U11/U12 small nuclear ribonucleoprotein 20 kDa protein;
                     zinc finger CCCH-type containing 19"
                     /codon_start=1
                     /product="zinc finger matrin-type protein 5"
                     /protein_id="NP_001003692.1"
                     /db_xref="CCDS:CCDS13868.1"
                     /db_xref="GeneID:55954"
                     /db_xref="HGNC:HGNC:28046"
                     /db_xref="MIM:619741"
                     /translation="MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDA
                     AAILLDEQNKRPCRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDA
                     PELPEGHLEDWLEKRAKRLSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGG
                     WPLQPRVQWG"
     exon            291..353
                     /gene="ZMAT5"
                     /gene_synonym="SNRNP20; U11/U12-20K; ZC3H19"
                     /inference="alignment:Splign:2.1.0"
     exon            354..434
                     /gene="ZMAT5"
                     /gene_synonym="SNRNP20; U11/U12-20K; ZC3H19"
                     /inference="alignment:Splign:2.1.0"
     exon            435..546
                     /gene="ZMAT5"
                     /gene_synonym="SNRNP20; U11/U12-20K; ZC3H19"
                     /inference="alignment:Splign:2.1.0"
     exon            547..945
                     /gene="ZMAT5"
                     /gene_synonym="SNRNP20; U11/U12-20K; ZC3H19"
                     /inference="alignment:Splign:2.1.0"
     regulatory      927..932
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZMAT5"
                     /gene_synonym="SNRNP20; U11/U12-20K; ZC3H19"
                     /note="hexamer: AAGAAA"
     polyA_site      945
                     /gene="ZMAT5"
                     /gene_synonym="SNRNP20; U11/U12-20K; ZC3H19"
                     /note="major polyA site"
ORIGIN      
        1 agtacgcgac gcgaggacgc aggaggagga gcccggagct gcagccaccg gggagccagg
       61 taccttccgc gagacgtcga ggggcgagtc ctagtctctt ttctccgcac tggaagactt
      121 gaacacttcc ttctctgcag caaagcacct gctctgagtg gccatgggga agcgatactt
      181 ctgtgactac tgcgaccgct ccttccagga caacctccac aaccgcaaga agcacctgaa
      241 cgggctgcag cacctcaagg ccaagaaggt ctggtacgac atgttccgag atgcagctgc
      301 catcttgctg gatgagcaga acaagcggcc ctgcaggaag tttctactga caggccagtg
      361 cgactttggc tccaactgca gattttccca catgtcagag cgagacctgc aggagctgag
      421 catccaggtg gaggaggaga ggcgagccag ggagtggcta ctagatgctc ctgagctccc
      481 cgagggccat ctggaggact ggctggagaa gagagccaag cggctgagct cagccccaag
      541 tagcagggct gaacccatca gaaccactgt cttccagtac cccgtgggct ggccaccagt
      601 tcaggagctg cctccatccc tgcgggcacc cccacctggg gggtggcctc tgcagcccag
      661 agtccagtgg ggctgagccc cttgcccccg actgaccccc acgtggtcac ttttctcatc
      721 agtcacaata ggaagccaag cccggttcct gctacgcccc atggaggctc cgagaccatc
      781 tgcccagcct cactgaggct caggacacgg ccacaccaag tgcagccctc gtcctgggtc
      841 tgcaccgggc agctctcccc tcactctcct ccacctgccc ccctgcttct taagaagatg
      901 ggggagaaaa cttccaaatg tttataaaga aagtctgtca ccaca
//
