LOCUS       NM_001271675            4729 bp    mRNA    linear   PRI 08-APR-2024
DEFINITION  Homo sapiens zinc finger CCCH-type containing 11C (ZC3H11C), mRNA.
ACCESSION   NM_001271675
VERSION     NM_001271675.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4729)
  AUTHORS   Kimura,K., Wakamatsu,A., Suzuki,Y., Ota,T., Nishikawa,T.,
            Yamashita,R., Yamamoto,J., Sekine,M., Tsuritani,K., Wakaguri,H.,
            Ishii,S., Sugiyama,T., Saito,K., Isono,Y., Irie,R., Kushida,N.,
            Yoneyama,T., Otsuka,R., Kanda,K., Yokoi,T., Kondo,H., Wagatsuma,M.,
            Murakawa,K., Ishida,S., Ishibashi,T., Takahashi-Fujii,A.,
            Tanase,T., Nagai,K., Kikuchi,H., Nakai,K., Isogai,T. and Sugano,S.
  TITLE     Diversification of transcriptional modulation: large-scale
            identification and characterization of putative alternative
            promoters of human genes
  JOURNAL   Genome Res 16 (1), 55-65 (2006)
   PUBMED   16344560
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL365217.10.
            
            On Sep 16, 2021 this sequence version replaced NM_001271675.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK302514.1, SRR5189667.172477.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000398578.3/ ENSP00000513306.1
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-175               AL365217.10        33250-33424
            176-4729            AL365217.10        33795-38348
FEATURES             Location/Qualifiers
     source          1..4729
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
                     /map="6q12"
     gene            1..4729
                     /gene="ZC3H11C"
                     /note="zinc finger CCCH-type containing 11C"
                     /db_xref="GeneID:441155"
                     /db_xref="HGNC:HGNC:56304"
     exon            1..175
                     /gene="ZC3H11C"
                     /inference="alignment:Splign:2.1.0"
     exon            176..4729
                     /gene="ZC3H11C"
                     /inference="alignment:Splign:2.1.0"
     CDS             677..3094
                     /gene="ZC3H11C"
                     /note="zinc finger CCCH-type containing 11A-like; zinc
                     finger CCCH-type domain-containing-like"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 11C"
                     /protein_id="NP_001258604.1"
                     /db_xref="CCDS:CCDS93939.1"
                     /db_xref="GeneID:441155"
                     /db_xref="HGNC:HGNC:56304"
                     /translation="MPNQGEDCYFFFYSTCTKGDSCPFRHCEAALGNETVCTLWQEGR
                     CFRRVCRFRHMEIDKKRSEIPCYWENQPTGCQKLNCAFHHNRGRYVDGLFLPPSKSVL
                     PTVPESPEEEVKASQLSVQQNKLSVQSNPSPQLRSVMKVESSENVPSPKHPPVVINAA
                     DDDEDDDDQFSEEGDETKTPTLQPTPEVHNGLRVTSVRKPAVNIKQGECLHFGIKTLE
                     EIKSKKMKEKSEEQGEGSSGVSSLLLHPEPVPGPEKENVRTVVRTVTLSTKQGEEPLV
                     RLGLTETLGKRKFSTGGDSDPPLKRSLAQRLGKKVEAPETNTDETPKKAQVSKSLKER
                     LGMSADPNNEDATDKVNKVGEIHVKTLEEMLLERASQKHGESQTKLKTEGPSKTDDST
                     SGARSSSTIRIKTFSEVLAEEEHRQQEAERQKSKKDTTCIKLKTDSEIKKTVVLPPIV
                     ASKGQSEEPAGKTKSMQEVHMKTVEEIKLEKALRVQQSSESSTSSPSQHEATPGARLL
                     LRITKRTWRKEEKKLQEGNEVDFLSRVRMEATEASVETTGVDITKIQVKRCEIMRETR
                     MQKQQEREKSVLTPLQGDVASCNTQVAEKPVLTAVPGITWHLTKQLPTKSSQKVEVET
                     SGIADSLLNVKWSAQTLEKRGEAKPTVNVKQSVVKVVSSPKLAPKRKAVEMHPAVTAA
                     VKPLSSSSVLQEPPAKKAAVDAVVLLVSEDKSVTVPETENPRDSLVLPLTQSSSDSSP
                     PEVSGPSSSQMSMKTRRLSSASTGKPPLSVEDDFEKLTWEISGGKLEAEIDLDPGKDE
                     DDLPLEL"
     regulatory      4710..4715
                     /regulatory_class="polyA_signal_sequence"
                     /gene="ZC3H11C"
                     /note="hexamer: AATAAA"
     polyA_site      4729
                     /gene="ZC3H11C"
                     /note="major polyA site"
ORIGIN      
        1 agtcttggtt ttctgctagt gctgctgctg ctgggaggac gacggacggc agcggccaag
       61 cgagaagaaa gacgtggcag caagcgggag tcggggatag tgtcatcggt tcgggtccca
      121 ctactttgga gcttgtctca aactccacat acagaaagcc accgacctta ttccgattat
      181 attgttcagc tatggaagat ggattttttt tcatgatcct ttgactctca agttcatctt
      241 taaatgaact cttttttttg ttttgttttt gaggagataa ctaaccctag ctgtctccag
      301 tctgacaaag gttatttgaa tggacttaat ctcccagtag ttgggagatg ttttaaaaac
      361 acatgctgtg tttgaattgt ggctgagagg ttttcttggc aatgtgagga ggaaaatttt
      421 ttctgcttca ttattattaa ttcatggatt gagtgttggt tcgacctaca ggcgtaatag
      481 attggaactc agtgaagaca cagacgttcc tgttgagagc aatcagctaa tgattacagt
      541 ttaaagacaa tttctgtgat caagttgtca tttggaagat taaacccatt tcacgaggac
      601 ttggagcctg gtccttgctt tgaggaagca gtggcttgtt tcaagaagcc acttctgatc
      661 taagaatcta cccagcatgc ctaatcaagg agaagactgc tatttttttt tctattctac
      721 atgtaccaaa ggtgacagct gcccattccg tcactgtgaa gctgcactag gcaatgaaac
      781 tgtttgcaca ttatggcaag aagggcgctg ttttcgacgg gtgtgcaggt ttcggcacat
      841 ggagattgat aaaaaacgca gtgaaattcc ttgttattgg gaaaatcagc caacaggatg
      901 tcaaaaatta aactgcgctt tccatcacaa tagaggacga tatgttgatg gccttttcct
      961 acctccgagc aaaagtgtgt tgcccactgt gcctgagtca ccagaagagg aagtgaaggc
     1021 tagccaactt tcagttcagc agaacaaatt gtctgtccag tccaatcctt cccctcagct
     1081 gcggagcgtt atgaaagtag aaagttccga aaatgttcct agccccaagc atccaccagt
     1141 tgtaattaat gctgcagatg atgatgaaga tgatgatgat cagttttctg aggaaggtga
     1201 tgaaaccaaa acacctaccc tgcaaccaac tcctgaagtt cacaatggat tacgagtgac
     1261 ttctgtccgg aaacctgcag tcaatataaa gcaaggtgaa tgtttgcatt ttggaataaa
     1321 aactcttgag gaaattaagt caaagaaaat gaaggaaaaa tctgaggagc aaggtgaggg
     1381 ttcttcagga gtttccagtc ttttactcca ccctgagcct gttccaggtc ctgaaaaaga
     1441 aaatgtcagg actgtggtga ggacagtaac tctctccacc aaacaaggag aagaaccctt
     1501 ggttagattg ggccttactg agacactggg gaaacgaaaa ttttcgacag gcggtgacag
     1561 tgatcctcca ttaaagcgca gcctggcaca gaggctaggg aagaaagttg aagctccaga
     1621 aactaacact gacgaaacac caaagaaagc tcaagtttcc aagtctctta aggagcgatt
     1681 aggcatgtca gctgatccaa ataatgagga cgcaacagat aaagttaata aagttggtga
     1741 gatccatgtg aagacattag aagaaatgct tcttgaaaga gccagtcaga aacatgggga
     1801 atcgcaaact aaactcaaga cagaaggacc ttcaaaaact gatgattcta cttcaggagc
     1861 aagaagctcc tccactatcc gtatcaaaac cttctctgag gtcctggctg aagaagaaca
     1921 taggcagcag gaagcagaga gacaaaaaag caaaaaggat acaacttgca tcaagctaaa
     1981 gactgatagt gaaattaaaa aaacagtagt tttgccaccc attgttgcca gcaaaggaca
     2041 atcagaggag cctgcaggta aaacaaagtc catgcaggag gtgcacatga agacggtgga
     2101 agaaattaaa ctggagaagg cactgagggt gcagcagagc tctgagagca gcaccagctc
     2161 cccgtctcaa catgaggcca ctccaggggc aaggttgcta ctgcgaatca ccaaaagaac
     2221 atggaggaaa gaagagaaga aacttcagga aggaaatgaa gttgattttc tgagccgtgt
     2281 tagaatggaa gctacagagg cttcagttga gaccacagga gttgacatca ctaaaattca
     2341 agtcaagaga tgtgagatca tgagagagac gcgcatgcag aaacagcagg agagggaaaa
     2401 atcagtcttg acacctcttc agggagatgt agcctcttgc aatacccaag tggcagagaa
     2461 accagtgctc actgctgtgc caggaatcac atggcacctg accaagcagc ttcccacaaa
     2521 gtcatcccag aaggtggagg tagaaacctc agggattgca gactcattat tgaatgtgaa
     2581 atggtcagca cagaccttgg aaaaaagggg tgaagctaaa cccacagtga acgtgaagca
     2641 atctgtggtt aaagttgtgt catcccccaa attggcccca aaacgtaagg cagtggagat
     2701 gcaccctgct gtcactgccg ctgtgaagcc actcagctcc agcagcgtcc tacaggaacc
     2761 cccagccaaa aaggcagctg tggatgctgt tgtcctgctt gtctctgagg acaaatcagt
     2821 cactgtgcct gaaacagaaa atcctagaga cagtcttgtg ctgcctctaa cccagtcctc
     2881 ttcagattcc tcacccccgg aggtgtctgg cccttcctca tcccaaatga gcatgaaaac
     2941 tcgccgactc agctctgcct caacaggaaa gcccccactc tctgtggagg atgattttga
     3001 gaaactaaca tgggagattt caggaggcaa attggaagct gagattgacc tggatcctgg
     3061 gaaagatgaa gatgaccttc cgcttgagct atgagaaatg attgatagct gaaggtggta
     3121 gtgaggacac tttaaaaaaa aatcgccaaa aaactggact tagtttcatc tattgtaaca
     3181 tttacctgag atgatcattt ctttagtcta gaatttgccc caaatcagaa gtatacctct
     3241 gaattatctg tatgtgtcct ggattccttg gggtcagatt tttaaagtta ctttataacc
     3301 attttgtcca tttgatgcca ttgtttatca tcttttgaga aaaaagttct gtcataccct
     3361 tctctccaca aaaaagagac tgagagggag atcaagtgaa agggtgcaag caaacttagt
     3421 gactccttga ggtgtttgtc agttttggct tttttctcct ttgttgtatt ctttatgtat
     3481 tgtcttgatg tacttaatat tacctgagtt tgaaatggat gaagacagct gctaccatta
     3541 aggaccaaat tttatgctac cactaaacaa aaatacccac tcagtctgtg ttagattgta
     3601 tgtcttttta aaggtattta gagattcaac taagctttaa agagggctga gcagctcagg
     3661 aagcctgtaa tgtgggcata actctttgga cctgatcttg atgcttctgc tgctctgttg
     3721 gcctctgaag agcaatatct aatttattat tactgtaatt ttttaaaagg ctttaaagtg
     3781 cctcaggggt cccctgaaac taattttcta tttctgggat tccctggatt cattatatga
     3841 gatggtgaca tgattagagg aattcttttt tagtatgaaa attgtccctt ttcttcttca
     3901 gtacttgcct ccttgctggc attgaattaa cacagggaca aaatatggtt aattttttat
     3961 ttctaattct cccaacaaac ccctgttgcc cagtatttat gtggtggcct ttaaccacct
     4021 gagggaaaaa atgagcttat tcaagctgcc aatatttatc tatgggctgt agcagtacac
     4081 tgaattgtac tgtgccaggg atattgagat gctctggggg tatattgtat acctgccagt
     4141 tttcttcatt tctgaattga gttttctttt cttgatgttg gtttccttca tatcacctca
     4201 aggtttagat ttgtgaagga ataagcatga tggaaataat agtcttgaaa ggagatatgt
     4261 tgtatataat caggaggaag aggaaggaag gacttaccca ttttgatatt ttgctgtagg
     4321 tggccagttt tgtttctcat agggaaatct gacccccacc tgtcatgttg gctcctaagg
     4381 aactgctgtt gtaagcggct catcaagagt tgaacttcac gtagccttgt tgggaatatg
     4441 gaaaaggaag aaagccacag gactgcccat tcagtcttgt taagattggg atgattctgc
     4501 acaagcaaaa atgacttgaa atttatgtat cgacacacct ctaccaatcc atcttcagct
     4561 gactgaatgt tgtatgatag cccttctcca aagcaggggt agaatgttca ggtttcacca
     4621 cggattttct acttatttcg cttttggaat cagcttacag attccaggtc ccttttgtag
     4681 atattcttta ttcttttgct tttttaaaaa ataaactggt attagtcaa
//
