LOCUS       XM_017023539            3098 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens xylosyltransferase 1 (XYLT1), transcript
            variant X2, mRNA.
ACCESSION   XM_017023539
VERSION     XM_017023539.3
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000016.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017023539.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3098
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="16"
     gene            1..3098
                     /gene="XYLT1"
                     /gene_synonym="DBQD2; PXYLT1; XT-I; XT1; XTI; xylT-I;
                     XYLTI"
                     /note="xylosyltransferase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 3 ESTs, 26 long SRA reads, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     14 samples with support for all annotated introns"
                     /db_xref="GeneID:64131"
                     /db_xref="HGNC:HGNC:15516"
                     /db_xref="MIM:608124"
     CDS             165..2783
                     /gene="XYLT1"
                     /gene_synonym="DBQD2; PXYLT1; XT-I; XT1; XTI; xylT-I;
                     XYLTI"
                     /codon_start=1
                     /product="xylosyltransferase 1 isoform X2"
                     /protein_id="XP_016879028.1"
                     /db_xref="GeneID:64131"
                     /db_xref="HGNC:HGNC:15516"
                     /db_xref="MIM:608124"
                     /translation="MVAAPCARRLARRSHSALLAALTVLLLQTLVVWNFSSLDSGAGE
                     RRGGAAVGGGEQPPPAPAPRRERRDLPAEPAAARGGGGGGGGGGGGRGPQARARGGGP
                     GEPRGQQPASRGALPARALDPHPSPLITLETQDGYFSHRPKEKVRTDSNNENSVPKDF
                     ENVDNSNFAPRTQKQKHQPELAKKPPSRQKELLKRKLEQQEKGKGHTFPGKGPGEVLP
                     PGDRAAANSSHGKDVSRPPHARKTGGSSPETKYDQPPKCDISGKEAISALSRAKSKHC
                     RQEIGETYCRHKLGLLMPEKVTRFCPLEGKANKNVQWDEDSVEYMPANPVRIAFVLVV
                     HGRASRQLQRMFKAIYHKDHFYYIHVDKRSNYLHRQVLQVSRQYSNVRVTPWRMATIW
                     GGASLLSTYLQSMRDLLEMTDWPWDFFINLSAADYPIRTNDQLVAFLSRYRDMNFLKS
                     HGRDNARFIRKQGLDRLFLECDAHMWRLGDRRIPEGIAVDGGSDWFLLNRRFVEYVTF
                     STDDLVTKMKQFYSYTLLPAESFFHTVLENSPHCDTMVDNNLRITNWNRKLGCKCQYK
                     HIVDWCGCSPNDFKPQDFHRFQQTARPTFFARKFEAVVNQEIIGQLDYYLYGNYPAGT
                     PGLRSYWENVYDEPDGIHSLSDVTLTLYHSFARLGLRRAETSLHTDGENSCRYYPMGH
                     PASVHLYFLADRFQGFLIKHHATNLAVSKLETLETWVMPKKVFKIASPPSDFGRLQFS
                     EVGTDWDAKERLFRNFGGLLGPMDEPVGMQKWGKGPNVTVTVIWVDPVNVIAATYDIL
                     IESTAEFTHYKPPLNLPLRPGVWTVKILHHWVPVAETKFLVAPLTFSNRQPIKPEKPS
                     NVLPAHGDDVICLGIR"
     polyA_site      3098
                     /gene="XYLT1"
                     /gene_synonym="DBQD2; PXYLT1; XT-I; XT1; XTI; xylT-I;
                     XYLTI"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 accctcccct ccagcgggga caggggtgtg gggagggggg cggcggcggc ggcccgagcg
       61 ggagcccgag cggcagccgg cggccgcggg agctgcgggg agcgcggggg cggcccggag
      121 cgtgccgggg tccccgcgcc tcgctcgccg gccgcgctcc gaagatggtg gcggcgccgt
      181 gcgcccggag gctggcccgg cgctcgcact cggcgctgct cgcggcgctc acggtgctgc
      241 tgctgcagac gctggtcgtg tggaatttca gcagcctcga ctccggggcc ggggagcgcc
      301 gcgggggcgc agcggtcggc ggcggggagc agccgccccc ggccccggcc ccgcgccggg
      361 agcgccggga cctgcccgcc gagccggctg cagcccgagg aggaggagga ggcggcggcg
      421 gaggaggagg aggacggggg ccccaggcgc gggcgcgggg aggcggcccc ggagaaccgc
      481 ggggacagca gccggccagc cggggggcac tgcccgcccg ggctctggat ccacacccaa
      541 gtccgctcat caccctggag actcaggatg gctacttttc tcatcggccg aaagagaaag
      601 tgcgaacaga cagcaacaac gagaactctg tccccaaaga ctttgagaat gtcgacaaca
      661 gcaacttcgc acccaggact caaaagcaga agcaccagcc tgagttggcg aagaagccac
      721 cgagtagaca gaaggagctt ttgaaaagga agctggaaca gcaggagaaa ggaaaaggac
      781 atacattccc tgggaaaggc cccggtgagg tgctgcctcc cggggacaga gccgcagcca
      841 acagcagcca cgggaaggat gtgtccagac cgcctcatgc caggaaaact gggggcagct
      901 cccccgagac caagtatgac cagcccccta agtgtgacat ctcaggcaag gaggccatct
      961 ctgccctgtc ccgtgctaag tccaagcact gccgccagga gattggggag acttactgcc
     1021 gccacaagtt agggctgctg atgcctgaga aggtgactcg gttctgcccc ctcgagggta
     1081 aagccaacaa gaacgtgcag tgggacgagg actccgtgga gtacatgcca gccaacccgg
     1141 tcagaatcgc ctttgtcctg gtggtccacg gccgtgcctc tcggcagttg cagcgcatgt
     1201 tcaaggccat ctaccacaaa gaccacttct actacatcca cgtggacaag cgctctaatt
     1261 acctgcatcg gcaagtgctc caggtctcca ggcagtacag caatgtccgc gtcaccccct
     1321 ggagaatggc caccatctgg ggaggagcca gcctcctgtc cacctacctg cagagcatgc
     1381 gggacctcct ggagatgacc gactggccct gggacttctt catcaacctg agtgcggccg
     1441 actaccccat caggacaaat gaccagttgg tggcgtttct ctcccgatac cgagatatga
     1501 atttcttgaa gtcacacggc cgggacaatg caaggttcat tcggaagcag ggcctggatc
     1561 ggctcttcct ggagtgcgac gctcacatgt ggcgcctggg agatcggcgg atcccagagg
     1621 gcattgccgt ggatggcggt tcggactggt tcctgctgaa ccggaggttt gtagaatatg
     1681 tgaccttctc cacagacgat ctggtgacca agatgaaaca gttctactcc tacaccctgc
     1741 ttcctgctga gtccttcttc catacggtcc tggagaacag cccccactgc gacaccatgg
     1801 tggacaacaa cctgcgcatc accaactgga atcgcaagct gggctgcaag tgccagtaca
     1861 agcacatcgt ggactggtgc ggctgctccc ccaatgactt caagccgcag gacttccacc
     1921 gcttccagca gacagcccgg cctaccttct ttgcccgcaa gtttgaagcc gtggtgaatc
     1981 aggaaatcat tgggcagctg gactattacc tgtacgggaa ctaccctgca ggtaccccgg
     2041 gcctgcgctc ctactgggag aatgtctacg atgagcctga cggcatccac agcctgagcg
     2101 acgtgacact caccttgtac cactcctttg cccgcctggg tcttcgacgg gccgagacgt
     2161 ccctgcacac ggatggggag aacagctgcc gatactaccc aatgggccac ccagcatctg
     2221 tgcacctcta cttccttgct gaccgcttcc agggctttct gatcaagcat catgctacca
     2281 atctggctgt gagcaaacta gagactctgg agacctgggt gatgccgaaa aaagtcttca
     2341 agatcgcaag cccacccagt gactttggga ggcttcagtt ttccgaggtc ggcactgact
     2401 gggatgccaa ggagaggcta ttccgcaact ttgggggtct tctggggccc atggatgagc
     2461 cggtgggtat gcagaagtgg gggaagggac ctaatgtgac cgtgaccgtc atttgggtgg
     2521 atcccgtcaa tgtcatcgca gccacctacg acatcctcat tgagtccact gccgaattca
     2581 cacactacaa gccccctttg aacttgcccc tgaggcctgg ggtctggaca gtgaaaattc
     2641 tccaccactg ggtgccagtt gcagagacca aattcctcgt tgcgcctctg accttctcga
     2701 acaggcagcc catcaaacct gagaaaccat ctaatgtcct acctgcacac ggagatgatg
     2761 tcatctgtct aggtattagg tagctatttg ttagacgctc ccccattcaa cttccagaaa
     2821 gcctagatca tattgaagac aagatgggaa ataaacccag gcaggtatta aggatcagca
     2881 aatcttgttt actattttaa aaaaatcaaa acaggaaatt ctgttcatca aaaatatgat
     2941 acactaggtg gaaaagatga accacataat agtagaagat atttgctaca tttttttaaa
     3001 gtactcatgt tcagaattta taaagaaatg ctattcatca gaagttggcc aatccagccc
     3061 actacctgtt tttgtaaata aagttttatt ggaacaca
//
