LOCUS       XM_017027838            2436 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens visual system homeobox 1 (VSX1), transcript
            variant X2, mRNA.
ACCESSION   XM_017027838
VERSION     XM_017027838.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000020.11) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017027838.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2436
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="20"
     gene            1..2436
                     /gene="VSX1"
                     /gene_synonym="CAASDS; KTCN; KTCN1; PPCD; PPCD1; PPD;
                     RINX"
                     /note="visual system homeobox 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 14 long SRA reads, 1 Protein, and 74% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:30813"
                     /db_xref="HGNC:HGNC:12723"
                     /db_xref="MIM:605020"
     CDS             46..702
                     /gene="VSX1"
                     /gene_synonym="CAASDS; KTCN; KTCN1; PPCD; PPCD1; PPD;
                     RINX"
                     /codon_start=1
                     /product="visual system homeobox 1 isoform X2"
                     /protein_id="XP_016883327.1"
                     /db_xref="GeneID:30813"
                     /db_xref="HGNC:HGNC:12723"
                     /db_xref="MIM:605020"
                     /translation="MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELP
                     APAGPGQGSGCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLL
                     LADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLG
                     KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQRVRHWAAEK
                     "
ORIGIN      
        1 gcaaacggga tccagagagg ctcgcgcctt gcttgctaag gaaccatgac cggccgggac
       61 tcgctttccg acgggcgcac tagcagcagg gcgctggtgc ctggcggttc ccctaggggc
      121 tcgcgccccc ggggcttcgc catcacggac ctgctgggct tggaggccga gctgccggcg
      181 cccgctggcc caggacaggg atctggctgc gagggtccgg cagtcgcgcc gtgcccgggc
      241 ccggggcttg acggctccag cctggcgcgt ggggccctac cgctgggact cggcctcctc
      301 tgtggcttcg gcacgcagcc gccggcggcc gctcgagcac cctgcctgct cctagcggac
      361 gtgccgttcc tgccgcccag gggccccgag cccgctgccc cgctggctcc cagccgtccg
      421 ccgcctgcgc tcggccgcca gaagcgcagc gacagcgtct ccacgtccga tgaggacagc
      481 cagtctgaag acaggaatga cctaaaggca tcccccacct tgggcaagag gaagaagcgg
      541 cggcacagga cagttttcac tgctcaccag ctggaagagt tggagaaggc attcagcgag
      601 gcccactacc ctgatgtgta tgcccgagaa atgctggctg tgaaaactga gctccccgaa
      661 gaccggatac agagggtgag acattgggct gcagagaaat gaagtgaacc tgctaagccg
      721 attgtcaaat ggatgagaaa ctcagagcca aggatcggga aaacaccctt aaagaacgag
      781 gtgatggctg agtctgtccc agctcagtgc tttgataaga ctgtgatcat cacagcagga
      841 cagtatcggc ctggggggac aaatggaccc atgcagcagg aataggagca ggcagcacac
      901 acacgtgtgg acagaaagtg ggtgcggctg acactggggg agggctggct ttttggtaag
      961 ttactgggac aactgtccat atgggaaaac atacaattgg acctgtacct cacaccttac
     1021 aggaaaacac ttccaggtgg attaaagaca tggtgtatgt gtgggatgtg tgaaaggcaa
     1081 aactataaag ctttcagatg ttttggttta gaagatcctt caattacccc caaactgtgg
     1141 cttaaaacaa ccattttaag gtcacaattg tgtgcatctg tttcagctaa gttcactaag
     1201 ccacagtctc tcgctctctc tcagtcccac ctttccctct ctctttctat ctacatatat
     1261 gcaagagttg ttgtgaaata ctctccctgt tttccagtgc aaacttctgc tcctggaggc
     1321 tcccgttcac tggactttgc aggagacaca caggctcccc agaccccgtg gtggtgcctg
     1381 atgaccttca gctgaaccct gtaatgctgc taaagtctgc ccctctggag aagtgctcag
     1441 gtagcattgt tctgcctcag gaagcatgcc gattttcctg tgtcatcctt gatgatcact
     1501 gctaccagac ttgccccctg cagggcaccc catgtgcaag gaattcaaca acctaggagt
     1561 tgaaagcatt ggtctcccaa gttcagtgtg ttcttttccg tatctattac cagctgatga
     1621 gaataaacct gcagtcatga cagctaggtc ctagtgacag gtgcagaaag ctgctcttac
     1681 agaaactccc ctccttatta agaggctttg tctatcactc ggaactgctt ctactcaaga
     1741 ttatctgttg aaagggaact gtccatacca gggcattgtt ctgacttttc tggacttcct
     1801 caacccaaaa tgccttgaag aaaaaaaaaa aagaccctga gtgttagggc agggtctcac
     1861 tctgtctcca ggctggagtg cagtggcaca atcatagctc accgcaacct ctaactcctg
     1921 ggctgaagtg atcctcccac ctcagtctcc tatgttgcta ggattacagc gtgagccact
     1981 gccccagcta ctccaactta agagttcccc caaggctggc tgcccttctc ctctccttcc
     2041 atcatgaatg acacatgggc atccccttcg gctagcatgg ctgacctgtg cctgcctggg
     2101 tgctcagctt ggcacccatg tgagtttgca gcctgaaatt ttaaatggag gagtttctgt
     2161 gcttttctgc cctgattcct cttactgacc ctctaagtca ccagctgtgg tcgtctcctc
     2221 tttgacccct gatctcaacc cgggctttga aatgtgtttg ttcacataat tgtccattac
     2281 ccatccttcc tgtcattgca gaatctgttg tctcatactg acattttaag actttttttc
     2341 actttcttct gttgaagatc acctactaag aagtacttcc tccttttcat tctttcttta
     2401 taagaattaa ttaaatttta attgacaaaa attgca
//
