LOCUS       NM_001144871            3056 bp    mRNA    linear   PRI 01-MAR-2025
DEFINITION  Homo sapiens V-set and transmembrane domain containing 5 (VSTM5),
            mRNA.
ACCESSION   NM_001144871 XM_001718950 XM_370648 XM_936690
VERSION     NM_001144871.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3056)
  AUTHORS   Taylor,T.D., Noguchi,H., Totoki,Y., Toyoda,A., Kuroki,Y., Dewar,K.,
            Lloyd,C., Itoh,T., Takeda,T., Kim,D.W., She,X., Barlow,K.F.,
            Bloom,T., Bruford,E., Chang,J.L., Cuomo,C.A., Eichler,E.,
            FitzGerald,M.G., Jaffe,D.B., LaButti,K., Nicol,R., Park,H.S.,
            Seaman,C., Sougnez,C., Yang,X., Zimmer,A.R., Zody,M.C.,
            Birren,B.W., Nusbaum,C., Fujiyama,A., Hattori,M., Rogers,J.,
            Lander,E.S. and Sakaki,Y.
  TITLE     Human chromosome 11 DNA sequence and analysis including novel gene
            identification
  JOURNAL   Nature 440 (7083), 497-500 (2006)
   PUBMED   16554811
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP001894.4.
            
            On May 17, 2019 this sequence version replaced NM_001144871.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660805.179002.1,
                                           SRR1803615.200351.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2162568 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000409977.2/ ENSP00000386607.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-207               AP001894.4         67058-67264         c
            208-534             AP001894.4         37643-37969         c
            535-675             AP001894.4         37389-37529         c
            676-3056            AP001894.4         34878-37258         c
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
                     /map="11q21"
     gene            1..3056
                     /gene="VSTM5"
                     /gene_synonym="C11orf90"
                     /note="V-set and transmembrane domain containing 5"
                     /db_xref="GeneID:387804"
                     /db_xref="HGNC:HGNC:34443"
                     /db_xref="MIM:621118"
     exon            1..207
                     /gene="VSTM5"
                     /gene_synonym="C11orf90"
                     /inference="alignment:Splign:2.1.0"
     CDS             117..719
                     /gene="VSTM5"
                     /gene_synonym="C11orf90"
                     /note="V-set and transmembrane domain-containing protein
                     5"
                     /codon_start=1
                     /product="V-set and transmembrane domain-containing
                     protein 5 precursor"
                     /protein_id="NP_001138343.1"
                     /db_xref="CCDS:CCDS44709.1"
                     /db_xref="GeneID:387804"
                     /db_xref="HGNC:HGNC:34443"
                     /db_xref="MIM:621118"
                     /translation="MRPLPSGRRKTRGISLGLFALCLAAARCLQSQGVSLYIPQATIN
                     ATVKEDILLSVEYSCHGVPTIEWTYSSNWGTQKIVEWKPGTQANISQSHKDRVCTFDN
                     GSIQLFSVGVRDSGYYVITVTERLGSSQFGTIVLHVSEILYEDLHFVAVILAFLAAVA
                     AVLISLMWVCNKCAYKFQRKRRHKLKESTTEEIELEDVEC"
     exon            208..534
                     /gene="VSTM5"
                     /gene_synonym="C11orf90"
                     /inference="alignment:Splign:2.1.0"
     exon            535..675
                     /gene="VSTM5"
                     /gene_synonym="C11orf90"
                     /inference="alignment:Splign:2.1.0"
     exon            676..3056
                     /gene="VSTM5"
                     /gene_synonym="C11orf90"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3038..3043
                     /regulatory_class="polyA_signal_sequence"
                     /gene="VSTM5"
                     /gene_synonym="C11orf90"
                     /note="hexamer: AATAAA"
     polyA_site      3056
                     /gene="VSTM5"
                     /gene_synonym="C11orf90"
                     /note="major polyA site"
ORIGIN      
        1 atctggccct aaagaacctg cggcagccag aggcggagga agagagaagg ctgcatagga
       61 gctgcagcgc ggtgcggcca gcacacaccc cggcccgcga ggccccgggc tcgcccatga
      121 ggcctctgcc cagcgggagg aggaagaccc gaggcatctc cctaggactc ttcgccctct
      181 gcctggccgc agcccgctgt ctgcagagtc agggtgtgtc cctatacatt cctcaggcca
      241 ccatcaatgc cactgtcaaa gaagacatcc tgctctcagt tgagtactcc tgtcatggag
      301 tgcccaccat cgaatggaca tattcatcca attggggaac gcagaagatc gtggagtgga
      361 aaccagggac tcaggccaac atctctcaaa gccacaagga cagagtctgc acctttgaca
      421 acggctccat ccagctcttc agcgtgggag tgagggattc cggctactat gtcatcaccg
      481 tgacggagcg cctggggagc agccagtttg gcaccatcgt gctgcacgtc tctgagatcc
      541 tctatgaaga cctgcacttt gtcgctgtca tccttgcttt tctcgctgct gtggccgcag
      601 tattaatcag cctcatgtgg gtttgtaata agtgtgcata taaatttcag aggaagagaa
      661 gacacaaact caaagaaagc acaactgagg agattgagct ggaagatgtt gagtgttagc
      721 caaggctggg cctgactgca ttcctacctc aagaggaaac cattctccaa caaaaagagc
      781 aagcacagct attataccca ttgtgtgtgg tcctgttgca gcccgctcct aacaggacag
      841 tgggagatta acaacattga ctgcatggag ttgaggactg tggatgggac aaagctagta
      901 ttaggactcg cgctaagttc aaggagaaga gtgattgagg ctttgaacca ggagcttcgc
      961 ttggctgcag catcagggcc gtgctgacac ataaccaatg ggtgagtgca ggcgttggct
     1021 gcttgctcac gacacttgct ctggtgtgca ggatggcctg ttgtcagagt ccctgtatca
     1081 gaggccagag gatttccaga tggatgtgca gccagcatta gaacatgctt tctgtgctcc
     1141 tgtctgctct gcaactgctg tgccaaccag ccccccatct ggtatcccac aagcaagcac
     1201 tgctgtggga gctattgtga gaaaacctga ggcttttaga caatctgctg cctcagagca
     1261 gaggtggaaa gagactgggg gtgggggttg gtgctgttgt gctgcagagt ttttcattgg
     1321 tgaggcccgg tggctgggag ttttatggga gaggagctca atggactcct gagaggccag
     1381 ctttggatac aaggaataga gaaaattatc tttctcttcc tccctcattc caacgttaat
     1441 tggattttcc ctcccatggc tcaaacttag gccattgtaa gtaaaacaac agctcatctc
     1501 cattatgggc agcacctggc ctcctgacga gctggatgcc acctgtgtga aagctgagct
     1561 tgcatagtgg gtgatgcagc tggaaaatca gtcatctcgg gctttgcatc tgtccccctc
     1621 agtcactaac acttcacgtc tcaagtcagg cccttgccct ctcctacctg ggctgaggaa
     1681 cgcttggccc ttgcctacct cacagtcaga gtatcaagag aagcccacag tatgcacaga
     1741 gttctctgag caacttacga aatgcatgag gcttcttcaa ggatctggaa agctatactg
     1801 gaaaacgcta ttctgagtat tagaaattga taaaatcctc tgaggtcttg gggctccagg
     1861 tgagattggg gactggacca cagctggcct tggccattat tccctcaggt tgttggtcac
     1921 catgttcacc tgtaagtttc tccatcccaa cttccatttg acaagctcta aaagcaggca
     1981 tggatttatt ttccattctc ttatctctcc aatattcata gctacagacc aaaggtacca
     2041 tccgatgatg atgtgttcct agtcctcagt tgcaaattca cccatgcaaa ggttaagaag
     2101 tcttagaaca ttcctttctc ttcttcctcc tttcaggcct ccaatgtcca tatcttctct
     2161 atttcctatg tggcagagga gttgcttgga taagttacag ccctttccct caatattgaa
     2221 tccagagttt tgggaaggga tctctcagaa tattcagaca ggaactctca gtatccagag
     2281 caggactccc aaggcactgc ttgattcaaa aggcgacagc agttggtcta cacaacggat
     2341 gtgtagctct agcacctgac aggtagaaga taccctcaag gcgcctcctg tagacacacg
     2401 ggtaaactca cacactatgt cctatcccca cgcagcagtc ggaggaacca ggctctgggc
     2461 caggacagtt tccagtgctg tgaagaaacg aggtgagcag tatccaaggg gctcaaggat
     2521 aatctgctga tttctttctt gtctttcaca cagagaggcc accagcagga aagcagtggg
     2581 agttgggtag ctgctggggc cagcatgtcc tcttccacac tacctgcctt tcagaactct
     2641 gctcttccgc ttgtcccgaa gtcagggctg gcaatcttca taatcaaagg ggagttggaa
     2701 aagaacaccc actaagaggc ctccatggca gatgtcaatt aaattgcccc cccgcccaaa
     2761 tctcatgaca gtttattcac atcagtagtg tgggaagtta caatgttttt tttaaaaaaa
     2821 gcttctttcc ttggctttcc atttctttga aaaaagggtt tcttttgaat ttttaaagct
     2881 ctgccatact gaacattcct gtggaaaggt ttaaaatgca gagcctgagg tttttgcttt
     2941 tcagaaaaat aaaaatctta gagattagct agtgtaaatg ttaagctata aattatattt
     3001 caaactgtga aaaaaaaaag ttttaaagaa tgaatgaaat aaaacctgaa aataaa
//
