LOCUS       XM_011514799            2659 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens VPS52 subunit of GARP complex (VPS52),
            transcript variant X2, mRNA.
ACCESSION   XM_011514799
VERSION     XM_011514799.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_011514799.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..2659
                     /gene="VPS52"
                     /gene_synonym="ARE1; dJ1033B10.5; SAC2; SACM2L"
                     /note="VPS52 subunit of GARP complex; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 58 ESTs, 422 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:6293"
                     /db_xref="HGNC:HGNC:10518"
                     /db_xref="MIM:603443"
     CDS             120..2090
                     /gene="VPS52"
                     /gene_synonym="ARE1; dJ1033B10.5; SAC2; SACM2L"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 52
                     homolog isoform X2"
                     /protein_id="XP_011513101.1"
                     /db_xref="GeneID:6293"
                     /db_xref="HGNC:HGNC:10518"
                     /db_xref="MIM:603443"
                     /translation="MNSSWMKWMGVDLRHYSKQVELELQQIEQKSIRDYIQESENIAS
                     LHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLG
                     ELVDGLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVL
                     DRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQTALLKYRFFYQFLLGNERATAKEIR
                     DEYVETLSKIYLSYYRSYLGRLMKVQYEEVAEKDDLMGVEDTAKKGFFSKPSLRSRNT
                     IFTLGTRGSVISPTELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFIC
                     EFFVVSGPAAHDLFHAVMGRTLSMTLKHLDSYLADCYDAIAVFLCIHIVLRFRNIAAK
                     RDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFS
                     SALVSINQTIPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVL
                     MERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEALIERGQAERLRG
                     EEARVTQLIRGFGSSWKSSVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFHRV
                     LSQPQLRALPARAELINIHHLMVELKKHKPNF"
     polyA_site      2659
                     /gene="VPS52"
                     /gene_synonym="ARE1; dJ1033B10.5; SAC2; SACM2L"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agtatggctt gggtaccaca acttccggtg cgcctttctt tacagttcgt aaggttcata
       61 ggcgggtggt cctgggctcc aggaaccact gcaacttggg gagttggata tcacttctga
      121 tgaattcatc ctggatgaag tggatgggtg tagatctccg tcactattca aagcaagttg
      181 agctggagct acagcagatt gaacagaaat ccattcggga ttatattcaa gagagtgaga
      241 atatagcatc tctacacaac cagatcacag cctgtgatgc tgtcctggag cgaatggagc
      301 agatgttggg agcttttcag agtgacctca gctccatcag ctctgagatc cggacactgc
      361 aggaacagtc aggagccatg aacattcgac ttcgaaatcg ccaggcagtt cgggggaaac
      421 ttggggagct tgttgatggt ctggtggtgc cttctgctct ggtcacggca attctggagg
      481 ctccagtgac agagcccagg ttcttggagc agctacagga gctggatgcc aaggcagccg
      541 cagtcagaga gcaggaagct agaggcacag cagcctgcgc agatgtcaga ggcgtgctcg
      601 atcggctccg ggtcaaggca gtgacgaaga tccgagagtt tatcctccag aagatttatt
      661 ccttcaggaa acccatgacc aactatcaga tcccccagac ggccctgctg aagtacaggt
      721 tcttctatca gtttctgctg ggcaatgaac gagcaacagc aaaggagatc agggatgaat
      781 atgtggagac gctgagcaag atttacctgt cttactaccg ctcttacctg gggcggctca
      841 tgaaggtgca gtatgaggaa gtcgctgaga aagatgatct aatgggtgtg gaagatacag
      901 caaagaaagg attcttctca aagccatcgc tccgcagcag gaacaccatt ttcaccctag
      961 gaacccgcgg ctctgtcatc tcccccactg aacttgaggc ccccatcctg gtgcctcaca
     1021 cagcgcagcg cggagagcag aggtatccat ttgaggccct cttccgcagc cagcactacg
     1081 ccctcctaga caattcctgc cgcgaatacc ttttcatctg tgaatttttt gttgtgtctg
     1141 gcccagctgc acacgacctg ttccatgctg tcatgggccg tacactcagc atgaccctga
     1201 aacacctgga ttcttatcta gctgactgct acgatgccat tgctgttttt ctctgtatcc
     1261 acattgttct ccggttccgt aacattgcag caaagaggga tgttcctgcc ctggacaggt
     1321 actgggaaca ggtgcttgcc ttgctatggc cacggtttga actgatcctg gagatgaatg
     1381 ttcagagcgt ccgaagcact gacccccagc gcctaggggg gttggatact cggccccact
     1441 atatcacacg ccgctatgca gagttctcct ccgctcttgt cagtatcaac cagacaattc
     1501 ctaatgaacg gaccatgcaa ttgctgggac agctgcaggt ggaggtggag aattttgtcc
     1561 tccgagtggc agctgagttc tcctcaagga aggagcagct tgtgtttctg atcaacaact
     1621 atgacatgat gctgggtgtg ctgatggagc gggctgcaga tgacagcaaa gaggttgaga
     1681 gcttccagca gctgctcaat gctcggacac aggaattcat tgaagagttg ctgtctcccc
     1741 cttttggggg tttagtggca tttgtgaagg aggctgaggc tttgattgag cgtggacagg
     1801 ctgagcgact tcgaggggaa gaagcccggg taactcagct gatccgtggc tttggtagtt
     1861 cctggaaatc atcagtggaa tctctgagtc aggatgtaat gcggagtttc accaacttca
     1921 gaaatggcac cagtatcatt cagggagcgc tgacccagct gatccagctc tatcatcgct
     1981 tccaccgggt gctgtcccag ccgcagctcc gagccctccc tgcccgggct gagctcatca
     2041 acattcacca ccttatggtg gagctcaaga agcataagcc caacttctga tgtgccagaa
     2101 accgccctga gatctgccgg tcatctccat ggacttctgc accccattcc atacccttct
     2161 tcacctgggg taccccttcc agttttcccc ttgcttccca ggcccttgac atggcttacc
     2221 tgccttcact cccagcacct tgcccaacag gataagctgg atccccttgg ccttctgaat
     2281 atcccagtgt cttcaggttt cccaagacca cttccctgtg ggcttccaaa atggccttta
     2341 tcatttctcc agtctgtcac cctcctttcc tgctcccata cacccaaggc ttgtttcttc
     2401 ccctgtaaaa accactgcct caatctctgg ttcactcaac tagtcaccat gtcctgaggc
     2461 atgaagcctc ctcagctctt ggaattgctg gcaaggggtg actgcctctg agtcattgtg
     2521 tttttcaaag tgatttcttt tctgtagctt tttgacctaa gatctcagca atttgaacac
     2581 taacctctcc cctcctggct caagaattac tccgaagtca gtctgcagaa aataaatatt
     2641 tagtatgaca tgacactta
//
