LOCUS       XM_047420601            1582 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens VPS50 subunit of EARP/GARPII complex
            (VPS50), transcript variant X4, mRNA.
ACCESSION   XM_047420601
VERSION     XM_047420601.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000007.14) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="7"
     gene            1..1582
                     /gene="VPS50"
                     /gene_synonym="CCDC132; NEDMSC; VPS54L"
                     /note="VPS50 subunit of EARP/GARPII complex; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 160 ESTs, 152 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 48 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:55610"
                     /db_xref="HGNC:HGNC:25956"
                     /db_xref="MIM:616465"
     CDS             103..1578
                     /gene="VPS50"
                     /gene_synonym="CCDC132; NEDMSC; VPS54L"
                     /codon_start=1
                     /product="syndetin isoform X4"
                     /protein_id="XP_047276557.1"
                     /db_xref="GeneID:55610"
                     /db_xref="HGNC:HGNC:25956"
                     /db_xref="MIM:616465"
                     /translation="MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQP
                     SDPQAEQELINSIEQVYFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSK
                     KVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLAN
                     QRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSC
                     ISELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMH
                     FTQAIHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWE
                     VMLSYYRTMEWHEKHDNEDTASASEGSNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQ
                     LKVKTYLLGTDLSIFKYDDFIFVLDIISRLMQVGEEFCGSKSEVLQESIRKQSVNYFK
                     NYHSMNLMNKKRVPIKSMTVTVMFLRNSNETMWMSRQEMVL"
ORIGIN      
        1 gtgaccaccc actatggctt cctagtgtca gggccagctg tgtagtggct cggtgtgatt
       61 tgttagctct ttgaggcagg gtaccctcct caggatttcg atatgcaaaa aatcaaatct
      121 ctcatgaccc gacagggtct gaaaagccct caagaaagcc tcagtgatct tggtgccata
      181 gagagtctcc gggtccctgg aaaggaagaa ttcagggaac ttcgagaaca gccaagtgac
      241 cctcaagctg aacaagagct tattaatagt attgaacaag tatatttttc tgtggattca
      301 tttgatattg ttaaatatga gctggagaag cttccacctg ttctcaattt gcaagaatta
      361 gaggcgtata gagacaaatt gaaacaacag caagctgcag tatctaaaaa agtggcagat
      421 ttaatccttg aaaaacagcc tgcttatgta aaggaacttg aaagagttac ctcattgcag
      481 acaggtcttc aattagctgc tgttatctgt acaaatggga gaagacactt gaatattgca
      541 aaggaaggtt ttactcaagc tagtttaggc cttcttgcaa atcaaaggaa acgtcagttg
      601 ctgattggac ttctgaaatc tctgagaact ataaaaacat tgcaaagaac agatgtacgg
      661 ttaagtgaaa tgctggagga ggaagattat ccaggagcta ttcagttgtg ccttgaatgt
      721 caaaaagctg ccagcacttt taaacattac agttgtataa gtgaactgaa ttcaaagctg
      781 caagatactt tggaacagat tgaggaacag ctggacgtag ctctttccaa aatctgcaag
      841 aattttgaca ttaaccatta taccaaggtt caacaagctt atcgacttct tggaaaaaca
      901 cagacagcaa tggatcaact tcatatgcac ttcacccaag ccattcacaa caccgtgttt
      961 caagttgttc ttggttatgt ggaactatgt gcaggaaaca cagacacaaa attccaaaag
     1021 ctgcaatata aggatctctg tacacatgtt acaccagaca gctatattcc atgccttgca
     1081 gacctgtgca aagcactatg ggaagttatg ctcagctatt ataggactat ggaatggcat
     1141 gaaaagcatg acaatgagga tactgcttca gcttctgaag ggagtaatat gataggtact
     1201 gaagaaacta attttgatcg tggctacata aaaaagaaat tagaacatgg acttacacga
     1261 atatggcagg atgttcagct aaaagtaaaa acctacttgc ttggaactga tttgtctata
     1321 ttcaaatatg atgatttcat ctttgttttg gatataatca gcaggttgat gcaagttgga
     1381 gaagaatttt gtggtagcaa gtctgaagtt ttacaggaat ctattagaaa acaaagtgtc
     1441 aattatttca agaattacca tagtatgaat ctgatgaaca agaaaagagt gcctatcaag
     1501 agtatgacag tgacagtgat gttcctgagg aactcaaacg agactatgtg gatgagcaga
     1561 caggagatgg tcctgtgaaa ag
//
