LOCUS       XM_047437932            7205 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens VAMP associated protein A (VAPA),
            transcript variant X5, mRNA.
ACCESSION   XM_047437932
VERSION     XM_047437932.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000018.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7205
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="18"
     gene            1..7205
                     /gene="VAPA"
                     /gene_synonym="hVAP-33; VAMP-A; VAP-33; VAP-A; VAP33"
                     /note="VAMP associated protein A; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 49 ESTs, 2396 long SRA reads, 5 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:9218"
                     /db_xref="HGNC:HGNC:12648"
                     /db_xref="MIM:605703"
     CDS             685..1395
                     /gene="VAPA"
                     /gene_synonym="hVAP-33; VAMP-A; VAP-33; VAP-A; VAP33"
                     /codon_start=1
                     /product="vesicle-associated membrane protein-associated
                     protein A isoform X2"
                     /protein_id="XP_047293888.1"
                     /db_xref="GeneID:9218"
                     /db_xref="HGNC:HGNC:12648"
                     /db_xref="MIM:605703"
                     /translation="MLQSKYSKMFIVECPFTDVVTTNLKLRNPSDRKVCFKVKTTAPR
                     RYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKE
                     AKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETR
                     KLMEECKRLQGEMMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSL
                     LVVIAAIFIGFFLGKFIL"
ORIGIN      
        1 gccgccgccg ccatcttgcg gtcccgcggg ggcgcctcct gggcgtccgg tcccgcccgc
       61 gccgcggtcc gcctgggccc gcgtccttgg ccccagaggc cgacggcgtg cttcggcggg
      121 gcgtgggcgg ctgggcaccc gagggcgtgc gctctgggct gcggcgggga gtgggctctg
      181 gaggtggcgc aagctgcgtc tgtcgcccgc tcccggctgt cagcggcgcg gggaggctag
      241 ggcacggcgc gggacccctt gggagtgaga gccgcccccc gacccctgcc ccggcccggg
      301 gagagctcgc tgcagccggc cctcgggttc cgcggagggc gtcgcttgtc acctttccgc
      361 caggtttaga actcggccgt caggtgtagg acgcgccggg gaggtggaga gtccttggag
      421 gtgcctggcg agggctgccc ggtgctgttg gcacggaccc aggtacgtgt ttatgtaaag
      481 gtgatggatg agtatttata cgaccagaac aatactacac tgtatgaaaa tggtgtaaaa
      541 gaagtaaaag acatggtccc ttccgaaaac aaatactaaa gttgatatgc atactgagat
      601 gttcaggagt gactatattg gtgtcttcag cttagtttga tgtgcatcaa aaattaagtg
      661 gatgtctgga cagggcagat agatatgctg caaagtaaat acagcaaaat gttcatcgta
      721 gaatgcccct tcacagatgt agtcactaca aatcttaaat tgcgaaatcc atcggataga
      781 aaagtgtgtt tcaaagtgaa gactacagca cctcgccggt actgtgtgag gcccaacagt
      841 ggaattattg acccagggtc aactgtgact gtttcagtaa tgctacagcc ctttgactat
      901 gatccgaatg aaaagagtaa acacaagttt atggtacaga caatttttgc tccaccaaac
      961 acttcagata tggaagctgt gtggaaagag gcaaaacctg atgaattaat ggattccaaa
     1021 ttgagatgcg tatttgaaat gcccaatgaa aatgataaat tgaatgatat ggaacctagc
     1081 aaagctgttc cactgaatgc atctaagcaa gatggaccta tgccaaaacc acacagtgtt
     1141 tcacttaatg ataccgaaac aaggaaacta atggaagagt gtaaaagact tcagggagaa
     1201 atgatgaagc tatcagaaga aaatcggcac ctgagagatg aaggtttaag gctcagaaag
     1261 gtagcacatt cggataaacc tggatcaacc tcaactgcat ccttcagaga taatgtcacc
     1321 agtcctcttc cttcacttct tgttgtaatt gcagccattt tcattggatt ctttctaggg
     1381 aaattcatct tgtagagtga agcatgcaga gtgctgtttc tttttttttt tttctcttga
     1441 ccagaaaaag atttgtttac ctaccatttc attggtagta tggcccacgg tgaccatttt
     1501 tttgtgtgta cagcgtcata taggctttgc ctttaatgat ctcttacggt tagaaaacac
     1561 aataaaaaca aactgttcgg ctactggaca ggttgtatat taccagatca tcactagcag
     1621 atgtcagttg cacattgagt cctttatgaa attcataaat aaagaattgt tctttctttg
     1681 tggttttaat aagagttcaa gaattgttca gagtcttgta aatgttattt taataatccc
     1741 tttaaatttt atctgttgct gttacctctt gaaatatgat ttatttagat tgctaatccc
     1801 actcattcag gaaatgccaa gaggtattcc ttggggaaat ggtgcctctt acagtgtaaa
     1861 tttttcctcc tttacctttg ctaatatcat ggcagaattt ttcttatccc ttgtgaggca
     1921 gttgttgact gagtttttca tccttacaat cctgtcccat ggtatttaac ataaaaaaaa
     1981 ataaaactgt taacagattc ttgctcgata gcttgtttgt gtctgtcgtg ttattagagg
     2041 gaactccact atatatggtc acttgaaatt atgatgcaaa ggtttctctt gcattgaaac
     2101 cctcttggat attacagtat ttttaattga aagtcctaat tctgttaagg aaaggagttg
     2161 attaaatttt aaggtaccac tggtattttg ggagattata atcagtttgt tttcaagata
     2221 atagaaaata aggtccatga gaatagaagt tatgtgattt cagtgagttg atgtgtacag
     2281 catggctgtg ctccatctga tttaccccat tcttaagttc tgagagtatg ttctcaagga
     2341 agatttaact ctctttggtt ttaaattact ttttaaccag cctaataaat aagtcttact
     2401 acttttcata atatttcata atagttaaaa gtaggtgttt ttttcgtgct caatttggca
     2461 ctcaaaataa tgttcattat ggaagtttgg taatactgag caagcctgtg gaattttctt
     2521 tatgaaaaat gattttagcc tttgcaaatg ttaaccatgt gaaacacatt ttcagtataa
     2581 gtatgcgtta cagggtttga tactttcctg cacttaggtt tgtcctattc ttcatttatt
     2641 catactagga tagaaaattt tggaatcaga aaatagatcc agtgtttagc tacatacaat
     2701 ctagtacaag tgaattttta ttcttaaaca taggtgtgtt ggctcttttt ttaaaagatg
     2761 cgctctacct gaaaaggaaa ttggatttta gaactggatg tggtgcagtg aagtatttta
     2821 ggcccaggtc tgtgtacaca ttttatagaa gaatgaagta ctctgaagta ttttggttgc
     2881 cttttcattt caactgtgtt ttgaatttgt cagatcacac atatattgtg ttattgggcg
     2941 ctgtggtatc ttttataaaa cctcttgctt gtgtgcaaaa gttcctaaaa ggaaacacaa
     3001 gtaatgccta tccattacta gcatgctatg ctgcatgctt tactgccatt gctgtatgct
     3061 ttactgtctt tgtaaaaatc cccctctccc cttttctggt aactggaaaa gcatgctaaa
     3121 aatagtctta tattttcacc ccataaatgc agaatcagta attccttggc ttaaagctct
     3181 tatataatca atattattgg tggtaaatac caagtttggt atctcatagc tatctttttt
     3241 taaagaaatt aagttcttga aaatttagcc aaatcccgtt ttatgggaat gctctttaga
     3301 attcattttg ttcagcccct ttgttctatg gttgagaaat ctgaggcctt acgaaggtta
     3361 agagaacttt ccccgtgtct cacaggtagg tagaggcaga gctggaacta gatatctggt
     3421 ctgttgactc tagctcagtg tcttctggta actgttgaaa attgtcttag tttgagagat
     3481 ggctgaaata atgaacataa aatgctattt ataataacaa gtatatgtga aatttcttat
     3541 tgtaagacta ctaccggctt actgttgaat agtttggtta tagtgtttag gctagaaatg
     3601 cctcccacat tggtaataaa cattacaaaa tacaatgtat ttttaggtag gcattttata
     3661 aaatgcatta tgccatggtt gcttttgaga tagattgtag tctgggtagc atctttaaaa
     3721 tgtatgtggg cttaactgtt gttcatatca ggagatgctc tgattgtata ggtgagactc
     3781 tgtttctgtt atttttaatt gctgtatgaa atgtgatcag attattttac taccaacagt
     3841 tatagtttga aagtccaact gtattaattg actgataata tgataatata gagattaaat
     3901 tgtttgtctt cattccttat atgtttagaa gtttttgctt tgtctgcctg cttacttgta
     3961 tatgtaagca tgagggaaat acactgttgc taatactgaa attacaatca agtaactaag
     4021 gccttgagtt catatgtgac actgaatgca ctagcttcct tcgttctata actaatgtac
     4081 cttaacttcc cccattctta tatttacaag aagctaagtc attatgttct gagtgtgtgg
     4141 tatgttccct taaaaaaaaa tgacacttgg aagaaaaatg tatgaaattc agaaattccg
     4201 atcaaagaaa agtaattctt tctttttttt tttgagacag agtcttgctt tgttgcccag
     4261 gctggagggc agtggtgtga tctcacctca ctgcagcttc cgcctcctgg gttcaagtga
     4321 ttctcatggc tcagccgcct gagtagctgg gattacaggt gtgagccaac aagcccggct
     4381 aatttttgta tttttagtag agacaaggtt tcaccatgtt ggtcaggctg ggctcaaact
     4441 cctgaatccg cctgcctcgg cctcccaaag tgctgggatt acaggtgtga gctgccgcac
     4501 ccagccaaga aaaataatac tcttaaatac ttagatgttc acctaaagtt gatattattt
     4561 ggtatgggaa ttacttttga actgtaatct ttcagattac accactttga aaacaagttt
     4621 taacagtagg gtaaaaatat agtttttgag ggtattccca acttgtgatc ttctaccact
     4681 ttagagacat tcaagtaata gttttcttag agctttgcac attcctattc actgagattt
     4741 taaaaatttc acctttattc gagggaagga tcaatgctta ttaccatttg gaaaaacgaa
     4801 gatcagaagg taaatgatct ttattttcta gctttaaagg gaaattaaac cattcatgaa
     4861 taaactttaa aaatgtgaag tgtccttttc cttttcacaa tacaaaaaaa atttcaacag
     4921 attgtgtggt ttgtgcattt atatcctgtt aagcattaat agctaatcac tgggacttga
     4981 attctgatgg cagatagtct cttgcttagt gagatggagt taactatttt ttagtaggaa
     5041 gtgagaacag ctgattttca tgccacgttt catagcccca cttttggtag actaccacca
     5101 cgcttcttcg cgtaagcagt ggcatcttgg gaatgaatgc ccagccgctc gtgggttggt
     5161 gcaaagaagt ataaacatat atcactaagg aaaaagaaag tttgtcttgc ccttctgaca
     5221 cagtgtgtgc acttcaggca atttttggaa aatataaaaa attccaaatt ctgcctttca
     5281 gcagcatcaa ttgctaggaa catttcattc atttccctgt aatattaatg ttctttaagc
     5341 ataatcacta attataagtt gtatcctatt tttttccagc ttaatttctg tggtttattg
     5401 aaaaccaagt ataaatgtga ctaaaagcat tttgctttgt ttttatagtt aactttctta
     5461 aggttatgga cattttataa tgtaacattt gattggcctg gcctcttgac aattcccttc
     5521 tagttatgca tatcctcctg ttgccacatt tcttgtttta aaactcagtt tcttgttttc
     5581 cagttgttgc tatgtataac acccatcttg aaagagagta tataggaagt tattcagata
     5641 acttttgtag tagtgatatt caactatagc agtaccttaa ctcatgatga gcttaggaac
     5701 ataaaagata attgttgctt gaatagcacc cccagagata ctgacctaat tggtctgggg
     5761 tggagatctg gcatggtagt ttttttcaag ctccaatcat cggccagaca gttgctttat
     5821 gtaggttttt aaatgccaaa ggcagatatg aagtagattt aattaagact tgacttcagc
     5881 aatacagggg aacttaaaat acttattttt ctttaaactg caggagtcac tgttaggtat
     5941 tgcttaaaaa aaattgcata aaagctttgc ttgtcaagtt aggattgctg gaataccact
     6001 aaagattttt gacttgtgaa taaatgagct gtcatcgcaa aaaggcgatt tgagaaatgt
     6061 gggcttcagt attaattgcc attttgctga cacccagtgt acctacctac ctgagaaatt
     6121 tattttgtcc atcatgtatt tctcaaagca aaaggtggtt ttcaagtata atgtcgtttt
     6181 caacatgctt attacttagt tttacgtcag ctcatttcat catcattgat aacttgtgaa
     6241 atacttatct ccatcctatg gaatagggga gacgggttta gacaggttca attagctcaa
     6301 gtctacacag ctgaagtagc agagaaagtg ggatctagat ggtctgatcc tagtgatcta
     6361 ccatatgaag gacatagttt gtgtcctggt ccaagtcaaa tattgactcc tcacaaacag
     6421 taagtatggc aattttgtga tgcctttgat tccactttac atggagtact attatttgtg
     6481 aaatgtcttt aagatttttg gtcttaaatt tttgaagact gctttccccc tttatctccc
     6541 agaaaattga gaagaagtaa actcctgccc actaacaatc tcagtccgtg aacaaaacca
     6601 acatgaacat tcctaaacaa gagtgtgtgt tactctaaga agaaggctat agaatttatg
     6661 gaaatggctt atgtaaccta caagactgga gaacagaatg tgactggcct tttctaatgg
     6721 tcctttaaga tttaatgatt aaagcaagag ttttttataa ttgactttgt ggtctaaatt
     6781 cttgatactg tttataattc tacaaagaac aaaaattgtt atgtactata ggcacttaag
     6841 aaccctgagg aaaaataata caatgtgtgt gtgtgagaga gagagtgagt tactgacatt
     6901 gttccaaaaa aaaaaaaaaa aaaaaaaaaa atgtggaggg ttgaaatggt aaggaattgg
     6961 aatcttttgt attttcgagc aataagaatt cctattcttg tttcaaatag aggtttgtta
     7021 ggaattacag ttgtggggag caaactttct tttttgtgct gttttaattc aaaatgtata
     7081 tccttaattg tatataatat gtagataaat atatgagggt attaagctac tttgaattaa
     7141 atttaaggat atatttcaca tgaaaacaaa tacaaacgag aatcaaaata aagttttgca
     7201 aagta
//
