LOCUS       XM_047437931            6863 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens VAMP associated protein A (VAPA),
            transcript variant X4, mRNA.
ACCESSION   XM_047437931
VERSION     XM_047437931.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000018.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6863
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="18"
     gene            1..6863
                     /gene="VAPA"
                     /gene_synonym="hVAP-33; VAMP-A; VAP-33; VAP-A; VAP33"
                     /note="VAMP associated protein A; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 43 ESTs, 2219 long SRA reads, and 97% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:9218"
                     /db_xref="HGNC:HGNC:12648"
                     /db_xref="MIM:605703"
     CDS             208..1053
                     /gene="VAPA"
                     /gene_synonym="hVAP-33; VAMP-A; VAP-33; VAP-A; VAP33"
                     /codon_start=1
                     /product="vesicle-associated membrane protein-associated
                     protein A isoform X1"
                     /protein_id="XP_047293887.1"
                     /db_xref="GeneID:9218"
                     /db_xref="HGNC:HGNC:12648"
                     /db_xref="MIM:605703"
                     /translation="MLQSKYSKMFIVECPFTDVVTTNLKLRNPSDRKVCFKVKTTAPR
                     RYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKE
                     AKPDELMDSKLRCVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPR
                     GLSVLKQEKQKNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEM
                     MKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFL
                     GKFIL"
ORIGIN      
        1 gtataacatc agtaacaaaa atgagcatct cccttgcccc agaaggctgc caaaagaatg
       61 gaaagaagtg ttttcatttt ttatttagaa aacaaatact aaagttgata tgcatactga
      121 gatgttcagg agtgactata ttggtgtctt cagcttagtt tgatgtgcat caaaaattaa
      181 gtggatgtct ggacagggca gatagatatg ctgcaaagta aatacagcaa aatgttcatc
      241 gtagaatgcc ccttcacaga tgtagtcact acaaatctta aattgcgaaa tccatcggat
      301 agaaaagtgt gtttcaaagt gaagactaca gcacctcgcc ggtactgtgt gaggcccaac
      361 agtggaatta ttgacccagg gtcaactgtg actgtttcag taatgctaca gccctttgac
      421 tatgatccga atgaaaagag taaacacaag tttatggtac agacaatttt tgctccacca
      481 aacacttcag atatggaagc tgtgtggaaa gaggcaaaac ctgatgaatt aatggattcc
      541 aaattgagat gcgtatttga aatgcccaat gaaaatgata aattgggtat aactccacca
      601 gggaatgctc cgactgtcac ttcaatgagc agcatcaaca acacagttgc aacacctgcc
      661 agttatcaca cgaaggatga ccccagggga ctcagtgtgt tgaaacagga gaaacagaag
      721 aatgatatgg aacctagcaa agctgttcca ctgaatgcat ctaagcaaga tggacctatg
      781 ccaaaaccac acagtgtttc acttaatgat accgaaacaa ggaaactaat ggaagagtgt
      841 aaaagacttc agggagaaat gatgaagcta tcagaagaaa atcggcacct gagagatgaa
      901 ggtttaaggc tcagaaaggt agcacattcg gataaacctg gatcaacctc aactgcatcc
      961 ttcagagata atgtcaccag tcctcttcct tcacttcttg ttgtaattgc agccattttc
     1021 attggattct ttctagggaa attcatcttg tagagtgaag catgcagagt gctgtttctt
     1081 tttttttttt tctcttgacc agaaaaagat ttgtttacct accatttcat tggtagtatg
     1141 gcccacggtg accatttttt tgtgtgtaca gcgtcatata ggctttgcct ttaatgatct
     1201 cttacggtta gaaaacacaa taaaaacaaa ctgttcggct actggacagg ttgtatatta
     1261 ccagatcatc actagcagat gtcagttgca cattgagtcc tttatgaaat tcataaataa
     1321 agaattgttc tttctttgtg gttttaataa gagttcaaga attgttcaga gtcttgtaaa
     1381 tgttatttta ataatccctt taaattttat ctgttgctgt tacctcttga aatatgattt
     1441 atttagattg ctaatcccac tcattcagga aatgccaaga ggtattcctt ggggaaatgg
     1501 tgcctcttac agtgtaaatt tttcctcctt tacctttgct aatatcatgg cagaattttt
     1561 cttatccctt gtgaggcagt tgttgactga gtttttcatc cttacaatcc tgtcccatgg
     1621 tatttaacat aaaaaaaaat aaaactgtta acagattctt gctcgatagc ttgtttgtgt
     1681 ctgtcgtgtt attagaggga actccactat atatggtcac ttgaaattat gatgcaaagg
     1741 tttctcttgc attgaaaccc tcttggatat tacagtattt ttaattgaaa gtcctaattc
     1801 tgttaaggaa aggagttgat taaattttaa ggtaccactg gtattttggg agattataat
     1861 cagtttgttt tcaagataat agaaaataag gtccatgaga atagaagtta tgtgatttca
     1921 gtgagttgat gtgtacagca tggctgtgct ccatctgatt taccccattc ttaagttctg
     1981 agagtatgtt ctcaaggaag atttaactct ctttggtttt aaattacttt ttaaccagcc
     2041 taataaataa gtcttactac ttttcataat atttcataat agttaaaagt aggtgttttt
     2101 ttcgtgctca atttggcact caaaataatg ttcattatgg aagtttggta atactgagca
     2161 agcctgtgga attttcttta tgaaaaatga ttttagcctt tgcaaatgtt aaccatgtga
     2221 aacacatttt cagtataagt atgcgttaca gggtttgata ctttcctgca cttaggtttg
     2281 tcctattctt catttattca tactaggata gaaaattttg gaatcagaaa atagatccag
     2341 tgtttagcta catacaatct agtacaagtg aatttttatt cttaaacata ggtgtgttgg
     2401 ctcttttttt aaaagatgcg ctctacctga aaaggaaatt ggattttaga actggatgtg
     2461 gtgcagtgaa gtattttagg cccaggtctg tgtacacatt ttatagaaga atgaagtact
     2521 ctgaagtatt ttggttgcct tttcatttca actgtgtttt gaatttgtca gatcacacat
     2581 atattgtgtt attgggcgct gtggtatctt ttataaaacc tcttgcttgt gtgcaaaagt
     2641 tcctaaaagg aaacacaagt aatgcctatc cattactagc atgctatgct gcatgcttta
     2701 ctgccattgc tgtatgcttt actgtctttg taaaaatccc cctctcccct tttctggtaa
     2761 ctggaaaagc atgctaaaaa tagtcttata ttttcacccc ataaatgcag aatcagtaat
     2821 tccttggctt aaagctctta tataatcaat attattggtg gtaaatacca agtttggtat
     2881 ctcatagcta tcttttttta aagaaattaa gttcttgaaa atttagccaa atcccgtttt
     2941 atgggaatgc tctttagaat tcattttgtt cagccccttt gttctatggt tgagaaatct
     3001 gaggccttac gaaggttaag agaactttcc ccgtgtctca caggtaggta gaggcagagc
     3061 tggaactaga tatctggtct gttgactcta gctcagtgtc ttctggtaac tgttgaaaat
     3121 tgtcttagtt tgagagatgg ctgaaataat gaacataaaa tgctatttat aataacaagt
     3181 atatgtgaaa tttcttattg taagactact accggcttac tgttgaatag tttggttata
     3241 gtgtttaggc tagaaatgcc tcccacattg gtaataaaca ttacaaaata caatgtattt
     3301 ttaggtaggc attttataaa atgcattatg ccatggttgc ttttgagata gattgtagtc
     3361 tgggtagcat ctttaaaatg tatgtgggct taactgttgt tcatatcagg agatgctctg
     3421 attgtatagg tgagactctg tttctgttat ttttaattgc tgtatgaaat gtgatcagat
     3481 tattttacta ccaacagtta tagtttgaaa gtccaactgt attaattgac tgataatatg
     3541 ataatataga gattaaattg tttgtcttca ttccttatat gtttagaagt ttttgctttg
     3601 tctgcctgct tacttgtata tgtaagcatg agggaaatac actgttgcta atactgaaat
     3661 tacaatcaag taactaaggc cttgagttca tatgtgacac tgaatgcact agcttccttc
     3721 gttctataac taatgtacct taacttcccc cattcttata tttacaagaa gctaagtcat
     3781 tatgttctga gtgtgtggta tgttccctta aaaaaaaatg acacttggaa gaaaaatgta
     3841 tgaaattcag aaattccgat caaagaaaag taattctttc tttttttttt tgagacagag
     3901 tcttgctttg ttgcccaggc tggagggcag tggtgtgatc tcacctcact gcagcttccg
     3961 cctcctgggt tcaagtgatt ctcatggctc agccgcctga gtagctggga ttacaggtgt
     4021 gagccaacaa gcccggctaa tttttgtatt tttagtagag acaaggtttc accatgttgg
     4081 tcaggctggg ctcaaactcc tgaatccgcc tgcctcggcc tcccaaagtg ctgggattac
     4141 aggtgtgagc tgccgcaccc agccaagaaa aataatactc ttaaatactt agatgttcac
     4201 ctaaagttga tattatttgg tatgggaatt acttttgaac tgtaatcttt cagattacac
     4261 cactttgaaa acaagtttta acagtagggt aaaaatatag tttttgaggg tattcccaac
     4321 ttgtgatctt ctaccacttt agagacattc aagtaatagt tttcttagag ctttgcacat
     4381 tcctattcac tgagatttta aaaatttcac ctttattcga gggaaggatc aatgcttatt
     4441 accatttgga aaaacgaaga tcagaaggta aatgatcttt attttctagc tttaaaggga
     4501 aattaaacca ttcatgaata aactttaaaa atgtgaagtg tccttttcct tttcacaata
     4561 caaaaaaaat ttcaacagat tgtgtggttt gtgcatttat atcctgttaa gcattaatag
     4621 ctaatcactg ggacttgaat tctgatggca gatagtctct tgcttagtga gatggagtta
     4681 actatttttt agtaggaagt gagaacagct gattttcatg ccacgtttca tagccccact
     4741 tttggtagac taccaccacg cttcttcgcg taagcagtgg catcttggga atgaatgccc
     4801 agccgctcgt gggttggtgc aaagaagtat aaacatatat cactaaggaa aaagaaagtt
     4861 tgtcttgccc ttctgacaca gtgtgtgcac ttcaggcaat ttttggaaaa tataaaaaat
     4921 tccaaattct gcctttcagc agcatcaatt gctaggaaca tttcattcat ttccctgtaa
     4981 tattaatgtt ctttaagcat aatcactaat tataagttgt atcctatttt tttccagctt
     5041 aatttctgtg gtttattgaa aaccaagtat aaatgtgact aaaagcattt tgctttgttt
     5101 ttatagttaa ctttcttaag gttatggaca ttttataatg taacatttga ttggcctggc
     5161 ctcttgacaa ttcccttcta gttatgcata tcctcctgtt gccacatttc ttgttttaaa
     5221 actcagtttc ttgttttcca gttgttgcta tgtataacac ccatcttgaa agagagtata
     5281 taggaagtta ttcagataac ttttgtagta gtgatattca actatagcag taccttaact
     5341 catgatgagc ttaggaacat aaaagataat tgttgcttga atagcacccc cagagatact
     5401 gacctaattg gtctggggtg gagatctggc atggtagttt ttttcaagct ccaatcatcg
     5461 gccagacagt tgctttatgt aggtttttaa atgccaaagg cagatatgaa gtagatttaa
     5521 ttaagacttg acttcagcaa tacaggggaa cttaaaatac ttatttttct ttaaactgca
     5581 ggagtcactg ttaggtattg cttaaaaaaa attgcataaa agctttgctt gtcaagttag
     5641 gattgctgga ataccactaa agatttttga cttgtgaata aatgagctgt catcgcaaaa
     5701 aggcgatttg agaaatgtgg gcttcagtat taattgccat tttgctgaca cccagtgtac
     5761 ctacctacct gagaaattta ttttgtccat catgtatttc tcaaagcaaa aggtggtttt
     5821 caagtataat gtcgttttca acatgcttat tacttagttt tacgtcagct catttcatca
     5881 tcattgataa cttgtgaaat acttatctcc atcctatgga ataggggaga cgggtttaga
     5941 caggttcaat tagctcaagt ctacacagct gaagtagcag agaaagtggg atctagatgg
     6001 tctgatccta gtgatctacc atatgaagga catagtttgt gtcctggtcc aagtcaaata
     6061 ttgactcctc acaaacagta agtatggcaa ttttgtgatg cctttgattc cactttacat
     6121 ggagtactat tatttgtgaa atgtctttaa gatttttggt cttaaatttt tgaagactgc
     6181 tttccccctt tatctcccag aaaattgaga agaagtaaac tcctgcccac taacaatctc
     6241 agtccgtgaa caaaaccaac atgaacattc ctaaacaaga gtgtgtgtta ctctaagaag
     6301 aaggctatag aatttatgga aatggcttat gtaacctaca agactggaga acagaatgtg
     6361 actggccttt tctaatggtc ctttaagatt taatgattaa agcaagagtt ttttataatt
     6421 gactttgtgg tctaaattct tgatactgtt tataattcta caaagaacaa aaattgttat
     6481 gtactatagg cacttaagaa ccctgaggaa aaataataca atgtgtgtgt gtgagagaga
     6541 gagtgagtta ctgacattgt tccaaaaaaa aaaaaaaaaa aaaaaaaaat gtggagggtt
     6601 gaaatggtaa ggaattggaa tcttttgtat tttcgagcaa taagaattcc tattcttgtt
     6661 tcaaatagag gtttgttagg aattacagtt gtggggagca aactttcttt tttgtgctgt
     6721 tttaattcaa aatgtatatc cttaattgta tataatatgt agataaatat atgagggtat
     6781 taagctactt tgaattaaat ttaaggatat atttcacatg aaaacaaata caaacgagaa
     6841 tcaaaataaa gttttgcaaa gta
//
