LOCUS       XM_047437929            9337 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens VAMP associated protein A (VAPA),
            transcript variant X2, mRNA.
ACCESSION   XM_047437929
VERSION     XM_047437929.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000018.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9337
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="18"
     gene            1..9337
                     /gene="VAPA"
                     /gene_synonym="hVAP-33; VAMP-A; VAP-33; VAP-A; VAP33"
                     /note="VAMP associated protein A; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 44 ESTs, 2219 long SRA reads, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:9218"
                     /db_xref="HGNC:HGNC:12648"
                     /db_xref="MIM:605703"
     CDS             2682..3527
                     /gene="VAPA"
                     /gene_synonym="hVAP-33; VAMP-A; VAP-33; VAP-A; VAP33"
                     /codon_start=1
                     /product="vesicle-associated membrane protein-associated
                     protein A isoform X1"
                     /protein_id="XP_047293885.1"
                     /db_xref="GeneID:9218"
                     /db_xref="HGNC:HGNC:12648"
                     /db_xref="MIM:605703"
                     /translation="MLQSKYSKMFIVECPFTDVVTTNLKLRNPSDRKVCFKVKTTAPR
                     RYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKE
                     AKPDELMDSKLRCVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPR
                     GLSVLKQEKQKNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEM
                     MKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFL
                     GKFIL"
ORIGIN      
        1 gccgccgccg ccatcttgcg gtcccgcggg ggcgcctcct gggcgtccgg tcccgcccgc
       61 gccgcggtcc gcctgggccc gcgtccttgg ccccagaggc cgacggcgtg cttcggcggg
      121 gcgtgggcgg ctgggcaccc gagggcgtgc gctctgggct gcggcgggga gtgggctctg
      181 gaggtggcgc aagctgcgtc tgtcgcccgc tcccggctgt cagcggcgcg gggaggctag
      241 ggcacggcgc gggacccctt gggagtgaga gccgcccccc gacccctgcc ccggcccggg
      301 gagagctcgc tgcagccggc cctcgggttc cgcggagggc gtcgcttgtc acctttccgc
      361 caggtttaga actcggccgt caggtgtagg acgcgccggg gaggtggaga gtccttggag
      421 gtgcctggcg agggctgccc ggtgctgttg gcacggaccc aggtacgtgt ttatgtaaag
      481 gtgatggatg agtatttata cgaccagaac aatactacac tgtatgaaaa tggtgtaaaa
      541 gaagtaaaag acatggtccc ttccggttgg taactttttc atactgtaat tttaggctcc
      601 cagaatggga atactggttt ataaaaaatg attacatgac catattaagt ggattttgga
      661 gagttttcat gatacattct gaaactgttg attgtatagt atggataaac tgattgtata
      721 atatgattgt ataatatgtt tgtataattg tataatatga ttgtataata tggacagtga
      781 ggcaatttca gtaattaaag cccttagagg cttaaataaa atagtgcagt cttgcttttc
      841 cattaatctc aggatccata cttttatgat gttagtgaaa tcttatgaag agatatgttt
      901 tagtgcttca atgactaagt ttttaaaaat agaactaaga ctcatttttt ttcccagaaa
      961 gtattactct atttgtacaa aaatatttat acaaaaatat ttcttcagta cctactacac
     1021 caggcattgt gttagttgct ggggatacag cagctaacga aacaaagacc tattcatgga
     1081 gcttacatca agtctgatat ttaaatgtgt ttgaaaaaaa catacagtaa gggtaaattc
     1141 aagtgacatc atttaaaaaa tttgtaataa gaatgtttta gggctttctt ggatgtaaaa
     1201 atgtaaaata ttttttgagt gcttgatact tatttcagga agtgttcagt gttgacctgt
     1261 gtgaccaaga gaaatacaat atcaatttaa aaatcttttt catatattgc taatttgact
     1321 gcactttcat gctttattgt ggcagaagtc tacctggaat acttatgaat tagaaaataa
     1381 ataccgtttg gttatacgta caaaatttat gagagttcag gccctagagt cagacctggt
     1441 ttgacttccc actttcattg ctttgagtta tatgaccttg gactactgtt taccttctaa
     1501 gttgaatcat ttgtaaactt ggtatattaa aatgtaatga aagtatctac ttcatggact
     1561 tgtgagggtt aaataacata gttcatacaa agttattgat acatgagtgc ccaataaacg
     1621 ctagctgttc cgttagtaga tattctgtgt actatatagt attaatatat gttttgtata
     1681 tatgattacc ttaacatgat gccacagata ctcagcagca taacccttgt gtaactggga
     1741 aacagtttaa tcagtgatac aacttaatta gctaaaacct gttagaaaca ttgaaggtag
     1801 tcatcacctg cattgctgtg gctacattgt ttgtgtattt gagcagagca cccagccttc
     1861 ctcattagtc tgcactgcat agctaagaat ttacaaagac cttgtcaaga actgtgaagg
     1921 gactgaaaat ttagcctgct gcagttttgt agatgttggt agaagacatg agatttcctg
     1981 agttagacag tggacatcat tgttcatggc actgcaagtg gaatgggctt tatatttgtg
     2041 ttgttttcct tgccctcctc aagttccatg gaggtgacag aggtgttcgg gtagatgcta
     2101 ctcacatagt gagtttgcat cataactaga aaccctgagc ttagagaacc ggaatctttc
     2161 atagtgggct gcacagaaac ctacctgacc tttgttccag tagaagacct tatcttgatt
     2221 atattggtca gtgaacaaac ctgcccctct cctcagaagg gaggtgttgt cttctaagac
     2281 agttcactat ttaatacatt cttgaaaaga tagcctgggt aaaaaccccc aggactactt
     2341 cttgcaagat gtgcagaaat gctagaggcc catggagaat tgtctcctaa acacacctct
     2401 gagtaactag cctaaatggg ggtcacagag ttcataaatt aatgttcatg tgcattgtct
     2461 gtttattctt aagttacatt ttagaagtgt tttctgtttt ctgaaatgct ctgtgtgata
     2521 tactactgct tatcccatat taaaatttta ttctcttaac agaaaacaaa tactaaagtt
     2581 gatatgcata ctgagatgtt caggagtgac tatattggtg tcttcagctt agtttgatgt
     2641 gcatcaaaaa ttaagtggat gtctggacag ggcagataga tatgctgcaa agtaaataca
     2701 gcaaaatgtt catcgtagaa tgccccttca cagatgtagt cactacaaat cttaaattgc
     2761 gaaatccatc ggatagaaaa gtgtgtttca aagtgaagac tacagcacct cgccggtact
     2821 gtgtgaggcc caacagtgga attattgacc cagggtcaac tgtgactgtt tcagtaatgc
     2881 tacagccctt tgactatgat ccgaatgaaa agagtaaaca caagtttatg gtacagacaa
     2941 tttttgctcc accaaacact tcagatatgg aagctgtgtg gaaagaggca aaacctgatg
     3001 aattaatgga ttccaaattg agatgcgtat ttgaaatgcc caatgaaaat gataaattgg
     3061 gtataactcc accagggaat gctccgactg tcacttcaat gagcagcatc aacaacacag
     3121 ttgcaacacc tgccagttat cacacgaagg atgaccccag gggactcagt gtgttgaaac
     3181 aggagaaaca gaagaatgat atggaaccta gcaaagctgt tccactgaat gcatctaagc
     3241 aagatggacc tatgccaaaa ccacacagtg tttcacttaa tgataccgaa acaaggaaac
     3301 taatggaaga gtgtaaaaga cttcagggag aaatgatgaa gctatcagaa gaaaatcggc
     3361 acctgagaga tgaaggttta aggctcagaa aggtagcaca ttcggataaa cctggatcaa
     3421 cctcaactgc atccttcaga gataatgtca ccagtcctct tccttcactt cttgttgtaa
     3481 ttgcagccat tttcattgga ttctttctag ggaaattcat cttgtagagt gaagcatgca
     3541 gagtgctgtt tctttttttt tttttctctt gaccagaaaa agatttgttt acctaccatt
     3601 tcattggtag tatggcccac ggtgaccatt tttttgtgtg tacagcgtca tataggcttt
     3661 gcctttaatg atctcttacg gttagaaaac acaataaaaa caaactgttc ggctactgga
     3721 caggttgtat attaccagat catcactagc agatgtcagt tgcacattga gtcctttatg
     3781 aaattcataa ataaagaatt gttctttctt tgtggtttta ataagagttc aagaattgtt
     3841 cagagtcttg taaatgttat tttaataatc cctttaaatt ttatctgttg ctgttacctc
     3901 ttgaaatatg atttatttag attgctaatc ccactcattc aggaaatgcc aagaggtatt
     3961 ccttggggaa atggtgcctc ttacagtgta aatttttcct cctttacctt tgctaatatc
     4021 atggcagaat ttttcttatc ccttgtgagg cagttgttga ctgagttttt catccttaca
     4081 atcctgtccc atggtattta acataaaaaa aaataaaact gttaacagat tcttgctcga
     4141 tagcttgttt gtgtctgtcg tgttattaga gggaactcca ctatatatgg tcacttgaaa
     4201 ttatgatgca aaggtttctc ttgcattgaa accctcttgg atattacagt atttttaatt
     4261 gaaagtccta attctgttaa ggaaaggagt tgattaaatt ttaaggtacc actggtattt
     4321 tgggagatta taatcagttt gttttcaaga taatagaaaa taaggtccat gagaatagaa
     4381 gttatgtgat ttcagtgagt tgatgtgtac agcatggctg tgctccatct gatttacccc
     4441 attcttaagt tctgagagta tgttctcaag gaagatttaa ctctctttgg ttttaaatta
     4501 ctttttaacc agcctaataa ataagtctta ctacttttca taatatttca taatagttaa
     4561 aagtaggtgt ttttttcgtg ctcaatttgg cactcaaaat aatgttcatt atggaagttt
     4621 ggtaatactg agcaagcctg tggaattttc tttatgaaaa atgattttag cctttgcaaa
     4681 tgttaaccat gtgaaacaca ttttcagtat aagtatgcgt tacagggttt gatactttcc
     4741 tgcacttagg tttgtcctat tcttcattta ttcatactag gatagaaaat tttggaatca
     4801 gaaaatagat ccagtgttta gctacataca atctagtaca agtgaatttt tattcttaaa
     4861 cataggtgtg ttggctcttt ttttaaaaga tgcgctctac ctgaaaagga aattggattt
     4921 tagaactgga tgtggtgcag tgaagtattt taggcccagg tctgtgtaca cattttatag
     4981 aagaatgaag tactctgaag tattttggtt gccttttcat ttcaactgtg ttttgaattt
     5041 gtcagatcac acatatattg tgttattggg cgctgtggta tcttttataa aacctcttgc
     5101 ttgtgtgcaa aagttcctaa aaggaaacac aagtaatgcc tatccattac tagcatgcta
     5161 tgctgcatgc tttactgcca ttgctgtatg ctttactgtc tttgtaaaaa tccccctctc
     5221 cccttttctg gtaactggaa aagcatgcta aaaatagtct tatattttca ccccataaat
     5281 gcagaatcag taattccttg gcttaaagct cttatataat caatattatt ggtggtaaat
     5341 accaagtttg gtatctcata gctatctttt tttaaagaaa ttaagttctt gaaaatttag
     5401 ccaaatcccg ttttatggga atgctcttta gaattcattt tgttcagccc ctttgttcta
     5461 tggttgagaa atctgaggcc ttacgaaggt taagagaact ttccccgtgt ctcacaggta
     5521 ggtagaggca gagctggaac tagatatctg gtctgttgac tctagctcag tgtcttctgg
     5581 taactgttga aaattgtctt agtttgagag atggctgaaa taatgaacat aaaatgctat
     5641 ttataataac aagtatatgt gaaatttctt attgtaagac tactaccggc ttactgttga
     5701 atagtttggt tatagtgttt aggctagaaa tgcctcccac attggtaata aacattacaa
     5761 aatacaatgt atttttaggt aggcatttta taaaatgcat tatgccatgg ttgcttttga
     5821 gatagattgt agtctgggta gcatctttaa aatgtatgtg ggcttaactg ttgttcatat
     5881 caggagatgc tctgattgta taggtgagac tctgtttctg ttatttttaa ttgctgtatg
     5941 aaatgtgatc agattatttt actaccaaca gttatagttt gaaagtccaa ctgtattaat
     6001 tgactgataa tatgataata tagagattaa attgtttgtc ttcattcctt atatgtttag
     6061 aagtttttgc tttgtctgcc tgcttacttg tatatgtaag catgagggaa atacactgtt
     6121 gctaatactg aaattacaat caagtaacta aggccttgag ttcatatgtg acactgaatg
     6181 cactagcttc cttcgttcta taactaatgt accttaactt cccccattct tatatttaca
     6241 agaagctaag tcattatgtt ctgagtgtgt ggtatgttcc cttaaaaaaa aatgacactt
     6301 ggaagaaaaa tgtatgaaat tcagaaattc cgatcaaaga aaagtaattc tttctttttt
     6361 tttttgagac agagtcttgc tttgttgccc aggctggagg gcagtggtgt gatctcacct
     6421 cactgcagct tccgcctcct gggttcaagt gattctcatg gctcagccgc ctgagtagct
     6481 gggattacag gtgtgagcca acaagcccgg ctaatttttg tatttttagt agagacaagg
     6541 tttcaccatg ttggtcaggc tgggctcaaa ctcctgaatc cgcctgcctc ggcctcccaa
     6601 agtgctggga ttacaggtgt gagctgccgc acccagccaa gaaaaataat actcttaaat
     6661 acttagatgt tcacctaaag ttgatattat ttggtatggg aattactttt gaactgtaat
     6721 ctttcagatt acaccacttt gaaaacaagt tttaacagta gggtaaaaat atagtttttg
     6781 agggtattcc caacttgtga tcttctacca ctttagagac attcaagtaa tagttttctt
     6841 agagctttgc acattcctat tcactgagat tttaaaaatt tcacctttat tcgagggaag
     6901 gatcaatgct tattaccatt tggaaaaacg aagatcagaa ggtaaatgat ctttattttc
     6961 tagctttaaa gggaaattaa accattcatg aataaacttt aaaaatgtga agtgtccttt
     7021 tccttttcac aatacaaaaa aaatttcaac agattgtgtg gtttgtgcat ttatatcctg
     7081 ttaagcatta atagctaatc actgggactt gaattctgat ggcagatagt ctcttgctta
     7141 gtgagatgga gttaactatt ttttagtagg aagtgagaac agctgatttt catgccacgt
     7201 ttcatagccc cacttttggt agactaccac cacgcttctt cgcgtaagca gtggcatctt
     7261 gggaatgaat gcccagccgc tcgtgggttg gtgcaaagaa gtataaacat atatcactaa
     7321 ggaaaaagaa agtttgtctt gcccttctga cacagtgtgt gcacttcagg caatttttgg
     7381 aaaatataaa aaattccaaa ttctgccttt cagcagcatc aattgctagg aacatttcat
     7441 tcatttccct gtaatattaa tgttctttaa gcataatcac taattataag ttgtatccta
     7501 tttttttcca gcttaatttc tgtggtttat tgaaaaccaa gtataaatgt gactaaaagc
     7561 attttgcttt gtttttatag ttaactttct taaggttatg gacattttat aatgtaacat
     7621 ttgattggcc tggcctcttg acaattccct tctagttatg catatcctcc tgttgccaca
     7681 tttcttgttt taaaactcag tttcttgttt tccagttgtt gctatgtata acacccatct
     7741 tgaaagagag tatataggaa gttattcaga taacttttgt agtagtgata ttcaactata
     7801 gcagtacctt aactcatgat gagcttagga acataaaaga taattgttgc ttgaatagca
     7861 cccccagaga tactgaccta attggtctgg ggtggagatc tggcatggta gtttttttca
     7921 agctccaatc atcggccaga cagttgcttt atgtaggttt ttaaatgcca aaggcagata
     7981 tgaagtagat ttaattaaga cttgacttca gcaatacagg ggaacttaaa atacttattt
     8041 ttctttaaac tgcaggagtc actgttaggt attgcttaaa aaaaattgca taaaagcttt
     8101 gcttgtcaag ttaggattgc tggaatacca ctaaagattt ttgacttgtg aataaatgag
     8161 ctgtcatcgc aaaaaggcga tttgagaaat gtgggcttca gtattaattg ccattttgct
     8221 gacacccagt gtacctacct acctgagaaa tttattttgt ccatcatgta tttctcaaag
     8281 caaaaggtgg ttttcaagta taatgtcgtt ttcaacatgc ttattactta gttttacgtc
     8341 agctcatttc atcatcattg ataacttgtg aaatacttat ctccatccta tggaataggg
     8401 gagacgggtt tagacaggtt caattagctc aagtctacac agctgaagta gcagagaaag
     8461 tgggatctag atggtctgat cctagtgatc taccatatga aggacatagt ttgtgtcctg
     8521 gtccaagtca aatattgact cctcacaaac agtaagtatg gcaattttgt gatgcctttg
     8581 attccacttt acatggagta ctattatttg tgaaatgtct ttaagatttt tggtcttaaa
     8641 tttttgaaga ctgctttccc cctttatctc ccagaaaatt gagaagaagt aaactcctgc
     8701 ccactaacaa tctcagtccg tgaacaaaac caacatgaac attcctaaac aagagtgtgt
     8761 gttactctaa gaagaaggct atagaattta tggaaatggc ttatgtaacc tacaagactg
     8821 gagaacagaa tgtgactggc cttttctaat ggtcctttaa gatttaatga ttaaagcaag
     8881 agttttttat aattgacttt gtggtctaaa ttcttgatac tgtttataat tctacaaaga
     8941 acaaaaattg ttatgtacta taggcactta agaaccctga ggaaaaataa tacaatgtgt
     9001 gtgtgtgaga gagagagtga gttactgaca ttgttccaaa aaaaaaaaaa aaaaaaaaaa
     9061 aaatgtggag ggttgaaatg gtaaggaatt ggaatctttt gtattttcga gcaataagaa
     9121 ttcctattct tgtttcaaat agaggtttgt taggaattac agttgtgggg agcaaacttt
     9181 cttttttgtg ctgttttaat tcaaaatgta tatccttaat tgtatataat atgtagataa
     9241 atatatgagg gtattaagct actttgaatt aaatttaagg atatatttca catgaaaaca
     9301 aatacaaacg agaatcaaaa taaagttttg caaagta
//
