LOCUS       XM_047427332            3604 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens ubiquitin specific peptidase 35 (USP35),
            transcript variant X1, mRNA.
ACCESSION   XM_047427332
VERSION     XM_047427332.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000011.10) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3604
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
     gene            1..3604
                     /gene="USP35"
                     /note="ubiquitin specific peptidase 35; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, 419 long SRA reads, 6 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:57558"
                     /db_xref="HGNC:HGNC:20061"
     CDS             250..3306
                     /gene="USP35"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 35 isoform
                     X1"
                     /protein_id="XP_047283288.1"
                     /db_xref="GeneID:57558"
                     /db_xref="HGNC:HGNC:20061"
                     /translation="MDKILEAVVTSSYPVSVKQGLVRRVLEAARQPLEREQCLALLAL
                     GARLYVGGAEELPRRVGCQLLHVAGRHHPDVFAEFFSARRVLRLLQGGAGPPGPRALA
                     CVQLGLQLLPEGPAADEVFALLRREVLRTVCERPGPAACAQVARLLARHPRCVPDGPH
                     RLLFCQQLVRCLGRFRCPAEGEEGAVEFLEQAQQVSGLLAQLWRAQPAAILPCLKELF
                     AVISCAEEEPPSSALASVVQHLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSW
                     PLGKNIDKWIIALLKGLAAVKKFSILIEVSLTKIEKVFSKLLYPIVRGAALSVLKYML
                     LTFQHSHEAFHLLLPHIPPMVASLVKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYE
                     PVMEAIKDLHVPNEDRIKQLLGQDAWTSQKSELAGFYPRLMAKSDTGKIGLINLGNTC
                     YVNSILQALFMASDFRHCVLRLTENNSQPLMTKLQWLFGFLEHSQRPAISPENFLSAS
                     WTPWFSPGTQQDCSEYLKYLLDRLHEEEKTGTRICQKLKQSSSPSPPEEPPAPSSTSV
                     EKMFGGKIVTRICCLCCLNVSSREEAFTDLSLAFPPPERCRRRRLGSVMRPTEDITAR
                     ELPPPTSAQGPGRVGPRRQRKHCITEDTPPTSLYIEGLDSKEAGGQSSQEERIEREEE
                     GKEERTEKEEVGEEEESTRGEGEREKEEEVEEEEEKVEKETEKEAEQEKEEDSLGAGT
                     HPDAAIPSGERTCGSEGSRSVLDLVNYFLSPEKLTAENRYYCESCASLQDAEKVVELS
                     QGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPLAGGRGQAYDLCSVVVHSGV
                     SSESGHYYCYAREGAARPAASLGTADRPEPENQWYLFNDTRVSFSSFESVSNVTSFFP
                     KDTAYVLFYRQRPREGPEAELGSSRVRTEPTLHKDLMEAISKDNILYLQEQEKEARSR
                     AAYISALPTSPHWGRGFDEDKDEDEGSPGGCNPAGGNGGDFHRLVF"
     polyA_site      3604
                     /gene="USP35"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agccccgggg ccgcgccgca gagtcgggct tcctggatac atagaggctt gtgccaggcg
       61 gggtgggaag actggatttt gcagtggaag cagcatctct tccgtctggg acctggctga
      121 gggcgtcccc accctggggg gagcagagga ccagccctga cctagccggg cccagcctcg
      181 tcctgcccgg cctgagcgcc ccgcccagca gccggctctg gcccaccggg gtccgggagc
      241 gcgggcgcca tggacaagat cttggaggcg gtggtgacgt cgtcataccc ggtcagcgtg
      301 aagcaggggc tggttcggcg cgtgctggag gcggcgcggc agccgctgga gcgtgagcag
      361 tgcctggcgc tgctggcgct gggcgcgcgc ctctacgtgg gcggcgcgga ggagctgccg
      421 cgccgcgtgg gctgccagct gctgcacgtg gccggccgcc accaccccga cgtcttcgcc
      481 gagttcttca gcgcgcgtcg cgtgctgcgc ctgctgcagg gtggcgccgg ccccccgggc
      541 ccccgcgcgc tcgcctgcgt gcagctgggt ctgcagctgc tgcccgaggg gcctgcggcc
      601 gacgaggtgt tcgcgctgct gcggcgcgag gtgctgcgca ccgtgtgcga gcgcccgggc
      661 cccgcggcct gcgcgcaggt ggcacggctg ctggctcgcc acccgcgctg tgtgcccgac
      721 ggaccccacc gcctgctctt ctgccagcag ctggtgcgtt gcctcggccg cttccgctgc
      781 ccagccgaag gcgaggaggg cgccgtggag ttcctagagc aggcccagca ggtgagcggg
      841 ctcctggcgc agctgtggcg cgcacagccc gccgccatcc tgccctgcct caaagagctg
      901 ttcgcagtca tctcctgcgc agaggaggag ccaccatcta gcgccctggc cagcgtggtc
      961 cagcacctcc cattggagct catggatggt gttgtccgga acctcagcaa tgatgacagt
     1021 gtgacagact cgcagatgct gactgccatt agcaggatga ttgactgggt gtcctggccc
     1081 ctggggaaga atattgacaa gtggatcatt gcactgctga agggcctggc tgctgttaag
     1141 aagttcagca tcttgatcga ggtttcgctc accaaaattg agaaggtttt ctctaagctg
     1201 ctgtacccca tcgtccgggg agctgccttg tctgtgctca agtacatgct cctgaccttc
     1261 cagcactccc acgaagcctt ccacctgctc ctccctcaca tcccccccat ggtggcctct
     1321 ctggtcaagg aggactcgaa ctcggggacc agctgcctgg agcagctggc ggagctggtc
     1381 cactgcatgg tgttccggtt cccgggcttc ccggatctgt atgagcctgt catggaggcc
     1441 atcaaggacc tccatgttcc caatgaggac cgcatcaagc agctgctggg gcaggatgcc
     1501 tggacttcgc agaagagcga gctggcgggt ttctatcccc ggctcatggc caagtcagac
     1561 acgggcaaga ttggtctcat caacctgggc aacacatgct atgtcaacag catccttcag
     1621 gccttattca tggcgtctga cttcagacat tgtgtgctcc gcttgactga gaacaactca
     1681 cagcccctga tgaccaagct gcagtggctc tttggcttcc tagaacacag ccagcggcct
     1741 gccatttccc cagagaactt cctctccgca tcctggacgc cctggttcag ccctggcacc
     1801 cagcaggact gctcggagta tctgaagtac ctgctggatc ggctgcacga agaggagaaa
     1861 acgggcacaa ggatctgcca gaaactcaag cagtccagct cgccctctcc gcccgaggag
     1921 cccccggccc caagttcaac ctctgtggaa aaaatgtttg gaggcaagat agtgactcgg
     1981 atctgctgtc tctgctgcct caacgtctcc tcccgggagg aggccttcac ggacctctct
     2041 ctcgccttcc ctcctcctga gcgctgtcgc cgccgccgcc tgggctctgt gatgcgcccc
     2101 acagaagaca tcacagcccg ggagttgccc ccaccaacca gtgcacaggg gccaggcagg
     2161 gtgggtcctc ggaggcaaag gaaacactgc atcacagagg acaccccccc caccagcctg
     2221 tacatcgaag gcctggactc caaggaagct ggtgggcaga gcagtcagga ggaaaggata
     2281 gagagggagg aagaagggaa ggaggagaga acggagaagg aagaagtggg ggaggaggag
     2341 gaaagcacca gaggggaagg agagagggag aaagaggagg aggtggaaga ggaagaagag
     2401 aaggtggaga aggagacaga aaaggaggct gagcaggaaa aggaagaaga cagcctggga
     2461 gcggggaccc acccggatgc tgccatcccc tccggggagc ggacatgtgg ctctgagggc
     2521 tcccgctccg tcctggacct ggttaactac ttcctgtccc ccgagaagct gacagcagaa
     2581 aaccgctact actgcgagtc gtgtgcctcc ctgcaggatg ccgagaaggt ggtggagctg
     2641 agccaagggc cgtgctacct catcctcaca ctgctgcgct tctctttcga cctgcgcacc
     2701 atgcggcgcc gcaagatcct ggatgacgtc tccatccccc tgctgctccg cctgccactg
     2761 gctggtggcc gtggccaggc ctatgacctc tgcagtgtgg tggtgcactc tggagtgtct
     2821 tcggagagtg gtcactacta ctgctatgcc cgtgagggcg ctgcccgccc tgccgcttct
     2881 ctgggaactg ccgataggcc agagcccgag aaccagtggt acctgttcaa tgacactcgg
     2941 gtgtccttct cttccttcga atctgtcagc aacgtcacct ccttcttccc taaggacaca
     3001 gcctatgtgc tgttttaccg gcagcggccc agggaggggc ccgaggctga gttgggctct
     3061 tctagagtcc ggacagagcc caccctgcac aaggacttga tggaagccat ttccaaagac
     3121 aacatccttt acctacagga gcaggagaag gaggcccgga gcagggcggc ctacatctct
     3181 gcactcccca catctccgca ctgggggagg ggctttgatg aagacaagga tgaggatgaa
     3241 ggctctccag ggggctgcaa tcctgcaggt ggcaatggtg gtgacttcca cagactggtc
     3301 ttctaatgtg aacctgctgc caacctgacc ccttccctcc aggagccagg ggctgcctgc
     3361 tgtgatggtg gtgtggagtt tgggcccaat gtcacagacc ctcaagatgt cacatctaag
     3421 tgacctgtga aagcagcaga cagacacgcc cagaacccat ctctagacgc ctaagaaagc
     3481 tggatgggta aatgctagta tgatttccac tttacaacag acgctgaggt agagagcatt
     3541 tgttcttatt cacagccaag aaaaataccc aattatttcc aaataaagca aaaattggaa
     3601 caga
//
