LOCUS       NM_001105522            1651 bp    mRNA    linear   PRI 04-JUN-2024
DEFINITION  Homo sapiens tripartite motif containing 49D2 (TRIM49D2), mRNA.
ACCESSION   NM_001105522 XM_001133354
VERSION     NM_001105522.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Han,K., Lou,D.I. and Sawyer,S.L.
  TITLE     Identification of a genomic reservoir for new TRIM genes in primate
            genomes
  JOURNAL   PLoS Genet 7 (12), e1002388 (2011)
   PUBMED   22144910
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP004607.4.
            
            On Sep 25, 2007 this sequence version replaced XM_001133354.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. There are no full-length transcripts specifically
            derived from this genomic location; the exon combination is
            predicted based on partial transcript alignments that may be
            specific for this location, and from full-length alignments from
            related GeneID:57093.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA1968968, SAMEA2144335
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            MANE Ensembl match        :: ENST00000623787.3/ ENSP00000485097.1
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-110               AP004607.4         10568-10677
            111-525             AP004607.4         13262-13676
            526-621             AP004607.4         13962-14057
            622-852             AP004607.4         15834-16064
            853-875             AP004607.4         16779-16801
            876-973             AP004607.4         17675-17772
            974-1651            AP004607.4         18890-19567
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
                     /map="11q14.3"
     gene            1..1651
                     /gene="TRIM49D2"
                     /gene_synonym="TRIM48L1; TRIM49D1; TRIM49D2P; TRIM49L;
                     TRIM49L1"
                     /note="tripartite motif containing 49D2"
                     /db_xref="GeneID:729384"
                     /db_xref="HGNC:HGNC:37217"
     exon            1..110
                     /gene="TRIM49D2"
                     /gene_synonym="TRIM48L1; TRIM49D1; TRIM49D2P; TRIM49L;
                     TRIM49L1"
                     /inference="alignment:Splign:2.1.0"
     exon            111..525
                     /gene="TRIM49D2"
                     /gene_synonym="TRIM48L1; TRIM49D1; TRIM49D2P; TRIM49L;
                     TRIM49L1"
                     /inference="alignment:Splign:2.1.0"
     CDS             115..1473
                     /gene="TRIM49D2"
                     /gene_synonym="TRIM48L1; TRIM49D1; TRIM49D2P; TRIM49L;
                     TRIM49L1"
                     /note="tripartite motif-containing protein 49-like protein
                     1; tripartite motif-containing protein 49D1; tripartite
                     motif containing 49D2, pseudogene"
                     /codon_start=1
                     /product="tripartite motif-containing protein 49D"
                     /protein_id="NP_001098992.1"
                     /db_xref="GeneID:729384"
                     /db_xref="HGNC:HGNC:37217"
                     /translation="MNSGISQVFQRELTCPICLNYFIDPVTIDCGHSFCRPCFYLNWQ
                     DIPILTQCFECLKTTQQRNLKTNIRLKKMASRARKASLWLFLSSEEQMCGTHRETKKI
                     FCEVDRSLLCLLCSSSLEHRYHRHCPAEWAAEEHREKLLKKMQSLWEKVCENQRNLNV
                     ETTRISHWKDYVNVRLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKDIFHRLHLSKAK
                     MAHRREILRGTYAELMKMCHKPDVELLQAFGDILHRSESVLLHMPQPLNLELRAGPIT
                     GLRDRLNQFRVDITLPHNEANSHIFRRGDLRSICIGCDRQNAPHITATPTSFLAWGAQ
                     TFTSGKYYWEVHVGDSWNWAFGVCNKYWKGTNQNGNIHGEEGLFSLGCVKNDIQCSLF
                     TTSPLTLQYVPRPTNHVGLFLDCEARTVSFVDVNQSSPIHTIPNCSFSPPLRPIFCCV
                     HL"
     exon            526..621
                     /gene="TRIM49D2"
                     /gene_synonym="TRIM48L1; TRIM49D1; TRIM49D2P; TRIM49L;
                     TRIM49L1"
                     /inference="alignment:Splign:2.1.0"
     exon            622..852
                     /gene="TRIM49D2"
                     /gene_synonym="TRIM48L1; TRIM49D1; TRIM49D2P; TRIM49L;
                     TRIM49L1"
                     /inference="alignment:Splign:2.1.0"
     exon            853..875
                     /gene="TRIM49D2"
                     /gene_synonym="TRIM48L1; TRIM49D1; TRIM49D2P; TRIM49L;
                     TRIM49L1"
                     /inference="alignment:Splign:2.1.0"
     exon            876..973
                     /gene="TRIM49D2"
                     /gene_synonym="TRIM48L1; TRIM49D1; TRIM49D2P; TRIM49L;
                     TRIM49L1"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1651
                     /gene="TRIM49D2"
                     /gene_synonym="TRIM48L1; TRIM49D1; TRIM49D2P; TRIM49L;
                     TRIM49L1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtgacctct gaaactcagt actgcggcga atgagctcct gaccttgagg agtacttaac
       61 agaattattt ctcgaagaat cattgtggga acccttcaaa gaacccagcg aaacatgaat
      121 tctggaatct cgcaagtctt ccagagggaa ctcacctgcc ccatctgcct gaactacttc
      181 atagacccgg tcaccataga ctgtgggcac agcttttgca ggccctgttt ctacctcaac
      241 tggcaagaca tcccaattct tactcagtgc tttgaatgcc taaagacaac acagcagaga
      301 aacctcaaaa ctaacattcg attgaagaag atggcttccc gtgccagaaa agccagtctc
      361 tggctattcc tgagctctga ggagcaaatg tgtggcactc acagggagac aaagaagata
      421 ttctgtgaag tggacaggag cctgctctgt ttgctgtgct ccagctctct ggagcaccgg
      481 tatcacagac actgtcccgc tgagtgggct gctgaggaac accgggagaa gcttttaaag
      541 aaaatgcagt ctttatggga aaaagtttgt gaaaatcaga gaaacctgaa cgtggaaacc
      601 accagaatca gccactggaa ggattatgtg aatgtaaggc tagaagctat tagagctgag
      661 tatcagaaga tgcctgcatt tcatcatgaa gaagaaaaac ataatttgga gatgctgaaa
      721 aagaagggga aagatatttt tcatcgactt catttaagta aagccaaaat ggctcacagg
      781 agggagattt taagaggaac gtatgcggag ctgatgaaaa tgtgccataa accagatgtg
      841 gagctacttc aggcttttgg agacatatta cacaggagtg agtccgtgct gctgcacatg
      901 ccccagcctc tgaatctaga gctcagggca gggcccatca ctggactgag ggacaggctc
      961 aaccaattcc gagtggatat tactctgcct cataatgaag ccaacagtca tatcttccga
     1021 cgtggagatt tgagaagcat ttgtattgga tgtgaccgtc aaaatgcgcc ccatatcact
     1081 gcaacaccta caagttttct tgcatggggt gctcagactt tcacctctgg caaatattac
     1141 tgggaggtcc atgtggggga ctcttggaat tgggcctttg gtgtctgtaa taagtattgg
     1201 aaagggacga atcagaatgg caatatacat ggagaggagg gactctttag tcttgggtgt
     1261 gttaagaatg acattcagtg cagcctcttt accacctccc cacttacact gcagtatgtc
     1321 ccaagaccta ccaaccatgt aggattattc ctggattgtg aagctagaac tgtgagcttc
     1381 gttgatgtta atcaaagctc ccctatacac accatcccta attgctcctt ctcacctcct
     1441 ctcaggccta tcttttgctg tgttcacctc tgaccagaga caaatcagat atgtgttcat
     1501 ctgctgtggg aaccccttta tcccagaaag ccctcttcct tgtgccttat caaacaggac
     1561 aaatacgttc tgttttatgt cttgaattgc attctaatgt tattaaaact catttattgt
     1621 gttactatta aatgtggtaa aaacactaaa a
//
