LOCUS       NM_001195234            2163 bp    mRNA    linear   PRI 03-APR-2024
DEFINITION  Homo sapiens tripartite motif containing 49C (TRIM49C), mRNA.
ACCESSION   NM_001195234 XM_003119176 XM_926073
VERSION     NM_001195234.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Han,K., Lou,D.I. and Sawyer,S.L.
  TITLE     Identification of a genomic reservoir for new TRIM genes in primate
            genomes
  JOURNAL   PLoS Genet 7 (12), e1002388 (2011)
   PUBMED   22144910
REFERENCE   3  (bases 1 to 2163)
  AUTHORS   Taylor,T.D., Noguchi,H., Totoki,Y., Toyoda,A., Kuroki,Y., Dewar,K.,
            Lloyd,C., Itoh,T., Takeda,T., Kim,D.W., She,X., Barlow,K.F.,
            Bloom,T., Bruford,E., Chang,J.L., Cuomo,C.A., Eichler,E.,
            FitzGerald,M.G., Jaffe,D.B., LaButti,K., Nicol,R., Park,H.S.,
            Seaman,C., Sougnez,C., Yang,X., Zimmer,A.R., Zody,M.C.,
            Birren,B.W., Nusbaum,C., Fujiyama,A., Hattori,M., Rogers,J.,
            Lander,E.S. and Sakaki,Y.
  TITLE     Human chromosome 11 DNA sequence and analysis including novel gene
            identification
  JOURNAL   Nature 440 (7083), 497-500 (2006)
   PUBMED   16554811
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP004607.4.
            
            On or before Apr 10, 2011 this sequence version replaced
            XM_003119176.1, XM_926073.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: BC126470.1 [ECO:0000331]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000448984.1/ ENSP00000388299.1
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               AP004607.4         117610-117748
            140-325             AP004607.4         118901-119086
            326-740             AP004607.4         121712-122126
            741-836             AP004607.4         122392-122487
            837-1067            AP004607.4         124253-124483
            1068-1090           AP004607.4         125197-125219
            1091-1188           AP004607.4         126369-126466
            1189-2163           AP004607.4         127555-128529
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
                     /map="11q14.3"
     gene            1..2163
                     /gene="TRIM49C"
                     /gene_synonym="TRIM49L2"
                     /note="tripartite motif containing 49C"
                     /db_xref="GeneID:642612"
                     /db_xref="HGNC:HGNC:38877"
     exon            1..139
                     /gene="TRIM49C"
                     /gene_synonym="TRIM49L2"
                     /inference="alignment:Splign:2.1.0"
     exon            140..325
                     /gene="TRIM49C"
                     /gene_synonym="TRIM49L2"
                     /inference="alignment:Splign:2.1.0"
     exon            326..740
                     /gene="TRIM49C"
                     /gene_synonym="TRIM49L2"
                     /inference="alignment:Splign:2.1.0"
     CDS             330..1688
                     /gene="TRIM49C"
                     /gene_synonym="TRIM49L2"
                     /note="tripartite motif-containing protein 49-like protein
                     2; tripartite motif containing 49-like 2; Tripartite
                     motif-containing protein LOC642612; tripartite
                     motif-containing protein 43B"
                     /codon_start=1
                     /product="tripartite motif-containing protein 49C"
                     /protein_id="NP_001182163.1"
                     /db_xref="CCDS:CCDS53694.1"
                     /db_xref="GeneID:642612"
                     /db_xref="HGNC:HGNC:38877"
                     /translation="MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQ
                     DIPFLVQCSECTKSTEQINLKTNIHLKKMASLARKVSLWLFLSSEEQMCGTHRETKKI
                     FCEVDRSLLCLLCSSSQEHRYHRHRPIEWAAEEHREKLLQKMQSLWEKACENHRNLNV
                     ETTRTRCWKDYVNLRLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAK
                     MAHRMEILRGMYEELNEMCHKPDVELLQAFGDILHRSESVLLHMPQPLNPELSAGPIT
                     GLRDRLNQFRVHITLHHEEANSDIFLYEILRSMCIGCDHQDVPYFTATPRSFLAWGVQ
                     TFTSGKYYWEVHVGDSWNWAFGVCNMYRKEKNQNEKIDGKEGLFLLGCIKNDIQCSLF
                     TTSPLMLQYIPKPTSRVGLFLDCEAKTVSFVDVNQSSLIYTIPNCSFSPPLRPIFCCI
                     HF"
     exon            741..836
                     /gene="TRIM49C"
                     /gene_synonym="TRIM49L2"
                     /inference="alignment:Splign:2.1.0"
     exon            837..1067
                     /gene="TRIM49C"
                     /gene_synonym="TRIM49L2"
                     /inference="alignment:Splign:2.1.0"
     exon            1068..1090
                     /gene="TRIM49C"
                     /gene_synonym="TRIM49L2"
                     /inference="alignment:Splign:2.1.0"
     exon            1091..1188
                     /gene="TRIM49C"
                     /gene_synonym="TRIM49L2"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..2163
                     /gene="TRIM49C"
                     /gene_synonym="TRIM49L2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctaatcttcc agttgccccc tattgacttt aaaccaaagc tttgattcat gaccactggg
       61 atccagccag cgggggattt cttttcctgg tggactgtac ccaggatctc acatttgctt
      121 aagcagcccc cacaattggg ttcttataaa aggacacgga agagacaagc tcagttttct
      181 ctgaaggaga aggactgcac ttagaactgc attttggcga cctctgaaat tcagtactgc
      241 agtgaatgag cttctgacct tgaggtgaac ttaacaaaat tatttttgga aaaatcgttg
      301 tgggaaccat taaaagaact ccaggaaaca tgaattctgg aatcttacag gtctttcagg
      361 gggaactcat ctgccccctg tgcatgaact acttcataga cccggtcacc atagactgtg
      421 ggcacagctt ttgcaggcct tgtttctacc tcaactggca agacatccca tttcttgtcc
      481 agtgctctga atgcacaaag tcaacagagc agataaacct caaaaccaac attcatttga
      541 agaagatggc ttctcttgcc agaaaagtca gtctctggct attcctgagc tctgaggagc
      601 aaatgtgtgg cactcacagg gagacaaaga agatattctg tgaagtggac aggagcctgc
      661 tctgtttgct gtgctccagc tctcaggagc accggtatca cagacaccgt cccattgagt
      721 gggctgctga ggaacaccgg gagaagcttt tacagaaaat gcagtctttg tgggaaaaag
      781 cttgtgaaaa tcacagaaac ctgaatgtgg aaaccaccag aaccagatgc tggaaggatt
      841 atgtgaattt aaggctagaa gcaattagag ctgagtatca gaagatgcct gcatttcatc
      901 atgaagaaga aaaacataat ttggagatgc tgaaaaagaa ggggaaagaa atttttcatc
      961 gacttcattt aagtaaagcc aaaatggctc ataggatgga gattttaaga ggaatgtatg
     1021 aggagctgaa cgaaatgtgc cataaaccag atgtggagct acttcaggct tttggagaca
     1081 tattacacag gagtgagtcc gtgctgctgc acatgcccca gcctctgaat ccagagctca
     1141 gtgcagggcc catcactgga ctgagggaca ggctcaacca attccgagtg catattactc
     1201 tgcatcatga agaagccaac agtgatatct ttctgtatga aattttgaga agcatgtgta
     1261 ttggatgtga ccatcaagat gtaccctatt tcactgcaac acctagaagt tttcttgcat
     1321 ggggtgttca gactttcacc tcgggcaaat attactggga ggtccatgta ggggactcct
     1381 ggaattgggc ttttggtgtc tgtaatatgt atcggaagga gaagaatcag aatgagaaga
     1441 tagatggaaa ggagggactc tttcttcttg ggtgtattaa gaatgacatt caatgcagtc
     1501 tctttaccac ctccccactt atgctgcaat atatcccaaa acctaccagc cgagtaggat
     1561 tattcctgga ttgtgaggct aagactgtga gctttgttga tgttaatcaa agctccctaa
     1621 tatacaccat ccctaattgc tctttctcac ctcctctcag gcctatcttt tgctgtattc
     1681 acttctgacc agagacaaat cagaaatgtg ttcacatgct gtgggaaccc ctttatccca
     1741 ggaagtcctc ttccttgtgc cttaacatac aggacaaata ggctctattt tatgtcttga
     1801 attgccttct aatgttatca aaactcattt attgtgttac tattaaatat gctgaaaacg
     1861 ctaaaagtat acgtattggt tctttattaa ataatttttg aaaaatcatt attcatgatc
     1921 atggcataca gtatattctc ttttttttct ttatttatga ctgtcactga gtgaaataat
     1981 agatgacaga catgtctgaa tgaagtaaaa atcaatggaa gacagtcggg atcttttgct
     2041 tcatgcaaaa aacttggagt gaagtctcaa tgataactgg gaaatgtttt tcttcctctt
     2101 tatctaacta tattacactt atccatcagg tttcattgta ttaatctatc ctttgaggta
     2161 ata
//
