LOCUS       NM_001164464            1650 bp    mRNA    linear   PRI 03-APR-2024
DEFINITION  Homo sapiens tripartite motif containing 43B (TRIM43B), mRNA.
ACCESSION   NM_001164464 XM_926437
VERSION     NM_001164464.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Hillier,L.W., Graves,T.A., Fulton,R.S., Fulton,L.A., Pepin,K.H.,
            Minx,P., Wagner-McPherson,C., Layman,D., Wylie,K., Sekhon,M.,
            Becker,M.C., Fewell,G.A., Delehaunty,K.D., Miner,T.L., Nash,W.E.,
            Kremitzki,C., Oddy,L., Du,H., Sun,H., Bradshaw-Cordum,H., Ali,J.,
            Carter,J., Cordes,M., Harris,A., Isak,A., van Brunt,A., Nguyen,C.,
            Du,F., Courtney,L., Kalicki,J., Ozersky,P., Abbott,S.,
            Armstrong,J., Belter,E.A., Caruso,L., Cedroni,M., Cotton,M.,
            Davidson,T., Desai,A., Elliott,G., Erb,T., Fronick,C., Gaige,T.,
            Haakenson,W., Haglund,K., Holmes,A., Harkins,R., Kim,K.,
            Kruchowski,S.S., Strong,C.M., Grewal,N., Goyea,E., Hou,S., Levy,A.,
            Martinka,S., Mead,K., McLellan,M.D., Meyer,R., Randall-Maher,J.,
            Tomlinson,C., Dauphin-Kohlberg,S., Kozlowicz-Reilly,A., Shah,N.,
            Swearengen-Shahid,S., Snider,J., Strong,J.T., Thompson,J.,
            Yoakum,M., Leonard,S., Pearman,C., Trani,L., Radionenko,M.,
            Waligorski,J.E., Wang,C., Rock,S.M., Tin-Wollam,A.M., Maupin,R.,
            Latreille,P., Wendl,M.C., Yang,S.P., Pohl,C., Wallis,J.W.,
            Spieth,J., Bieri,T.A., Berkowicz,N., Nelson,J.O., Osborne,J.,
            Ding,L., Meyer,R., Sabo,A., Shotland,Y., Sinha,P., Wohldmann,P.E.,
            Cook,L.L., Hickenbotham,M.T., Eldred,J., Williams,D., Jones,T.A.,
            She,X., Ciccarelli,F.D., Izaurralde,E., Taylor,J., Schmutz,J.,
            Myers,R.M., Cox,D.R., Huang,X., McPherson,J.D., Mardis,E.R.,
            Clifton,S.W., Warren,W.C., Chinwalla,A.T., Eddy,S.R., Marra,M.A.,
            Ovcharenko,I., Furey,T.S., Miller,W., Eichler,E.E., Bork,P.,
            Suyama,M., Torrents,D., Waterston,R.H. and Wilson,R.K.
  TITLE     Generation and annotation of the DNA sequences of human chromosomes
            2 and 4
  JOURNAL   Nature 434 (7034), 724-731 (2005)
   PUBMED   15815621
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from AC009237.3.
            
            On Dec 23, 2020 this sequence version replaced NM_001164464.1.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA1968968, SAMEA2142586
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000639673.3/ ENSP00000492719.1
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-149               AC009237.3         8223-8371           c
            150-564             AC009237.3         5921-6335           c
            565-660             AC009237.3         5212-5307           c
            661-891             AC009237.3         3922-4152           c
            892-914             AC009237.3         3003-3025           c
            915-1012            AC009237.3         2377-2474           c
            1013-1650           AC009237.3         625-1262            c
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="2"
                     /map="2q11.1"
     gene            1..1650
                     /gene="TRIM43B"
                     /note="tripartite motif containing 43B"
                     /db_xref="GeneID:653192"
                     /db_xref="HGNC:HGNC:37146"
     exon            1..149
                     /gene="TRIM43B"
                     /inference="alignment:Splign:2.1.0"
     exon            150..564
                     /gene="TRIM43B"
                     /inference="alignment:Splign:2.1.0"
     CDS             154..1494
                     /gene="TRIM43B"
                     /note="tripartite motif-containing protein 43-like protein
                     1"
                     /codon_start=1
                     /product="tripartite motif-containing protein 43B"
                     /protein_id="NP_001157936.1"
                     /db_xref="CCDS:CCDS92808.1"
                     /db_xref="GeneID:653192"
                     /db_xref="HGNC:HGNC:37146"
                     /translation="MDSDFSHAFQKELTCVICLNYLVDPVTICCGHSFCRPCLCLSWE
                     EAQSPANCPACREPSPKMDFKTNILLKNLVTIARKASLWQFLSSEKQICGTHRQTKKM
                     FCDMDKSLLCLLCSNSQEHGAHKHYPIEEAAEEDREKLLKQMRILWKKIQENQRNLYE
                     ERRTAFLLRGDVVLRAQMIRNEYRKLHPVLHKEEKQHLERLNKEYQEIFQQLQRSWVK
                     MDQKSKHLKEMYQELMEMCHKPEVELLQDLGDIVARSESVLLHMPQPVNPELTAGPIT
                     GLVYRLNRFRVEISFHFEVTNHNIRLFEDVRSWMFRRGPLNSDRSDYFAAWGARVFSF
                     GKHYWELDVDNSCDWALGVCNNSWIRKNSTMVNSEDIFLLLCLKVDNHFNLLTTSPVF
                     PHYIEKPLGRVGVFLDFESGSVSFLNVTKSSLIWSYPAGSLTFPVRPFFYTGHR"
     exon            565..660
                     /gene="TRIM43B"
                     /inference="alignment:Splign:2.1.0"
     exon            661..891
                     /gene="TRIM43B"
                     /inference="alignment:Splign:2.1.0"
     exon            892..914
                     /gene="TRIM43B"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1012
                     /gene="TRIM43B"
                     /inference="alignment:Splign:2.1.0"
     exon            1013..1650
                     /gene="TRIM43B"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attcttctcc agagcccaca gagtagcttt gcaactggct ttggggactt ccgaaagcta
       61 ccagcactgc actgtgagac tctcatccct gagctgaatc catctgattc gacagcaagc
      121 tttggtgaga acatagatat atttctgagg aaaatggact cagacttctc acatgccttc
      181 cagaaggaac tcacctgtgt catctgtttg aactacctgg tagaccctgt caccatctgc
      241 tgtgggcaca gcttctgtag gccctgtctc tgcctttcgt gggaggaagc ccaaagtcct
      301 gcaaactgcc ctgcatgcag ggaaccatca ccgaaaatgg acttcaaaac caatattctt
      361 ctgaagaatt tagtgaccat tgccagaaaa gccagtctct ggcaattcct gagctctgag
      421 aaacaaatat gtgggaccca taggcaaaca aagaagatgt tctgtgacat ggacaagagt
      481 ctcctctgct tgctgtgctc caactctcag gagcacgggg ctcacaaaca ctatcccatc
      541 gaagaggcag ctgaggaaga ccgggagaaa ctcttaaagc aaatgaggat tttatggaaa
      601 aagattcaag aaaatcagag aaatctatat gaggagagaa gaacagcctt cctcttgagg
      661 ggcgatgtgg ttttacgggc acagatgatc aggaatgagt ataggaagct gcatccggtt
      721 ctccataagg aagaaaaaca acatttagag agactgaaca aggaatacca agagattttt
      781 cagcaactcc agagaagttg ggtcaaaatg gatcaaaaga gtaaacactt gaaagaaatg
      841 tatcaggaac taatggaaat gtgtcataaa ccagaggtgg agctgctcca ggatttggga
      901 gacatcgtgg caaggagtga gtccgtgctg ctgcacatgc cccagcctgt gaatccagag
      961 ctcactgcag gacccatcac tggactggtg tacaggctca accgcttccg agtggaaatt
     1021 tccttccatt ttgaagtaac caatcacaat atcaggctct ttgaggatgt gagaagttgg
     1081 atgtttagac gtggaccttt gaattctgac agatctgact attttgctgc atggggagcc
     1141 agggtcttct cctttgggaa acactactgg gagctggatg tggacaactc ttgtgactgg
     1201 gctctgggag tctgtaacaa ctcctggata aggaagaata gcacaatggt taactctgag
     1261 gacatatttc ttcttttgtg tctgaaggtg gataatcatt tcaatctctt gaccacctcc
     1321 ccagtgtttc ctcactacat agagaaacct ctgggccggg ttggtgtgtt tcttgatttt
     1381 gaaagtggaa gtgtgagttt tttgaatgtc accaagagtt ccctcatatg gagttaccca
     1441 gctggctcct taacttttcc tgtcaggcct ttcttttaca ctggccacag atgatcagga
     1501 ttaagaaaac ttactgtttg ggaactccat atacaaggga gcccttcact gttgatacaa
     1561 agaaatcata ctgttcaggc ttttttgtac tttagtgtca cttcattttt attgctatta
     1621 aataaaaaat ttgtaaaagg caaaactttt
//
