LOCUS       XM_047419068            7351 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens transcriptional regulating factor 1
            (TRERF1), transcript variant X46, mRNA.
ACCESSION   XM_047419068
VERSION     XM_047419068.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7351
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..7351
                     /gene="TRERF1"
                     /gene_synonym="BCAR2; dJ139D8.5; HSA277276; RAPA;
                     TReP-132; TREP132"
                     /note="transcriptional regulating factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 5 ESTs, 680 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 25 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:55809"
                     /db_xref="HGNC:HGNC:18273"
                     /db_xref="MIM:610322"
     CDS             584..3937
                     /gene="TRERF1"
                     /gene_synonym="BCAR2; dJ139D8.5; HSA277276; RAPA;
                     TReP-132; TREP132"
                     /codon_start=1
                     /product="transcriptional-regulating factor 1 isoform X6"
                     /protein_id="XP_047275024.1"
                     /db_xref="GeneID:55809"
                     /db_xref="HGNC:HGNC:18273"
                     /db_xref="MIM:610322"
                     /translation="MGDQQLYKTNHVAHGSENLFYQQPPLGVHSGLNHNYGNAVTGGG
                     MDAPQASPISPHFPQDTRDGLGLPVGSKNLGQMDTSRQGGWGSHAGPGNHVQLRGNLA
                     NSNMMWGAPAQAEPTDGYQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVN
                     NMAQVLHTQSAVMDGAPDSALRQLLSQKPMEPPAPAIPSRYQQVPQQPHPGFTGGLSK
                     PALQVGQHPTQGHLYYDYQQPLAQVPVQGGQPLQAPQMLSQHMQQMQQHQYYPPQQQQ
                     QAGQQRISMQEIQTQPQQIRPSQPQPPPQQQQPQQLQLQQRQGSMQIPQYYQPQPMMQ
                     HLQEQQQQQMHLQPPSYHRDPHQYTPEQAHTVQLIPLGSMSQYYYQEPQQPYSHPLYQ
                     QSHLSQHQQREDSQLKTYSSDRQAQAMLSSHGDLGPPDTGMGDPASSDLTRVSSTLPH
                     RPLLSPSGIHLNNMGPQHQQLSPSAMWPQMHLPDGRAQPGSPESSGQPKGAFGEQFDA
                     KNKLTCSICLKEFKNLPALNGHMRSHGGMRASPNLKQEIPRKHQPSVPKAEEPLKTVQ
                     EKKKFRHRPEPLFIPPPPSYNPNPAASYSGATLYQSQLRSPRVLGDHLLLDPTHELPP
                     YTPPPMLSPVRQGSGLFSNVLISGHGPGAHPQLPLTPLTPTPRVLLCRSNSIDGSNVT
                     VTPGPGEQTVDVEPRINIGLRFQAEIPELQDISALAQDTHKATLVWKPWPELENHDLQ
                     QRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMVALEMLLLRKPVRLKCHPLAN
                     YHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGR
                     KHRTRLAEIIDDCVTSEEEEELEEEEEEDPEEDRKSTKEEESEVPKSPEPPPVPVLAP
                     TEGPPLQALGQPSGSFICEMPNCGAVFSSRQALNGHARIHGGTNQVTKARGAIPSGKQ
                     KPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTHRQQEE
                     QQRQKAQKAAFAAEMAATIERTTGPVGAPGLLPLDQLSLIKPIKDVDILDDDVVQQLG
                     GVMEEAEVVDTDLLLDDQDSVLLQGDAEL"
ORIGIN      
        1 cttccctcta agcgatggct gagaggcggt gcatgcagat ggggactctg ctcgcccccc
       61 atctcacccc ccaagcggat actggtcttc tcgtcggatt gcccatgcac ttgttgcaga
      121 aacagccaag gccctggctg tggagaatgc tgaaggaaga agacgcagaa gcaggacgac
      181 cctgaaagat tcagcctctt catcctcaaa caggaccagg cctcctcttc ccacctgtcc
      241 agcagcatga aagcagcatg attggccgac cgcaggagaa gcccccagaa ccaggccccc
      301 aactcagcca tctgcggagg tcaaggtgtg agcgacgtct cctcaccaca gtgctgtgtg
      361 gtctatacct cagccaggga gaggatgtga aaccccccgc cctgcacatg agtggtacag
      421 gccaacagga acacctggct ccagccacgt tcacagacat gtcagccgtg gagtagtgct
      481 gacacttttc tctcagcttc tcagggtttc agtccttttg ggtttgtttt atttaccttt
      541 tttatggttt tgtggctgga cgttcacaac caaggcagac agcatgggtg accagcaact
      601 gtacaagacc aaccatgtgg cccatggtag tgagaacctt ttctaccaac agccaccact
      661 tggcgtccac agcgggctga accacaacta tgggaatgca gttacagggg gcggaatgga
      721 tgcccctcag gcctcgccaa tctcccccca cttccctcaa gatacacggg atggtctggg
      781 cttgcctgtt ggctccaaaa accttggcca aatggatacc tcgaggcagg gagggtgggg
      841 aagtcatgca gggcctggaa accatgtcca gctacgtgga aacctggcca actcaaacat
      901 gatgtggggg gcaccagccc aggctgagcc cactgatggc taccaataca cctactccca
      961 ggccagcgag atccggaccc agaagcttac cagcggtgtc ttacacaagc tggactcttt
     1021 cacccaggtg tttgccaacc aaaacctgcg aattcaggtc aacaatatgg cccaggtgct
     1081 gcacactcag tcagcagtga tggatggagc ccctgacagt gctctccgcc agctgctgtc
     1141 tcagaagccc atggagcccc cagcaccggc tatcccttcc cgctaccagc aggtgcccca
     1201 gcagcctcac cctggtttca ctggtgggct gtccaaacca gctcttcagg tcgggcagca
     1261 ccctacccaa gggcacctgt attatgacta ccagcagcct ctggctcagg tgccagtgca
     1321 gggaggacag ccactgcagg ccccacagat gctgtcacag cacatgcaac agatgcagca
     1381 gcaccagtat tacccaccgc agcaacagca gcaagccggg caacagcgta tctccatgca
     1441 agaaatacag acgcagccgc aacaaattcg cccatcacag ccacagccgc cgccacagca
     1501 gcagcagccg cagcagctac agctgcagca gcggcagggt tcaatgcaga tacctcagta
     1561 ttatcagccc caacccatga tgcagcactt gcaagagcag cagcagcaac agatgcacct
     1621 gcagcctcct tcttatcaca gggaccctca ccagtatacc ccagagcagg cacacactgt
     1681 ccagctgatt cccctgggct ccatgtccca gtactactac caggagcccc agcagcccta
     1741 cagccacccc ctctaccagc agagccacct gtcccagcac cagcagcgtg aggacagtca
     1801 gctgaagacc tactctagtg acagacaggc ccaggccatg ctgagctccc atggggacct
     1861 ggggcctcct gacacaggaa tgggagaccc agcgagctca gatctgaccc gggtcagcag
     1921 caccctcccc catcgccccc tcctatcccc cagtgggatc cacctcaaca acatggggcc
     1981 tcagcatcag cagctgtctc ccagtgccat gtggccccag atgcacctac ctgatgggag
     2041 agcccagcca gggtcccctg agtcaagtgg ccaacccaaa ggagcgtttg gggagcagtt
     2101 tgatgccaag aacaagctga catgctccat ctgcctgaag gagttcaaga acctgcctgc
     2161 cctgaatggc cacatgcggt cccacggggg aatgagggcc tcccccaacc tcaaacagga
     2221 aatccccagg aagcatcagc cgagtgtgcc caaagccgag gagcccctca agaccgtgca
     2281 ggagaagaaa aagttccggc accggccgga acctctcttc atcccgccgc cgccctccta
     2341 caacccgaac cccgctgcct cctactcggg cgccaccctg taccagagcc agctgcgctc
     2401 cccgcgcgtc ctcggggacc acctgctcct ggaccccacc cacgagctgc ccccttacac
     2461 gcccccaccc atgctgagcc cggtgcgcca gggctcgggg ctcttcagca atgtcctcat
     2521 ctccggccac ggccctggcg cccacccgca gctgcccctg acgcccctga cgcccacacc
     2581 acgggtgctg ctgtgtcgct ccaacagcat cgatggcagc aacgtgacgg tcaccccagg
     2641 gcctggagag cagactgtag atgttgaacc acgcatcaac attggcttga gattccaagc
     2701 agaaatccct gaactccaag atatctctgc cctggcccag gacacacaca aggccacact
     2761 ggtatggaag ccctggccag aactagaaaa ccatgacctc cagcaaagag tggagaatct
     2821 tctgaatttg tgctgttcca gtgcattgcc aggtggaggg accaattctg aatttgcttt
     2881 gcactctctg tttgaggcca aaggtgatgt gatggttgct ctggaaatgc tgctactgcg
     2941 gaagcctgtc aggttaaaat gtcatccttt agcaaattac cactatgccg gttcggacaa
     3001 gtggacctcc ctagaaagaa aactgtttaa caaagcacta gccacttaca gcaaagactt
     3061 tatttttgta cagaagatgg tgaagtccaa gacggtggct cagtgcgtgg agtactacta
     3121 cacgtggaaa aagatcatgc ggctggggcg gaaacaccgg acacgcctgg cagaaatcat
     3181 cgacgattgt gtgacaagtg aagaagaaga agagttagag gaggaggagg aggaggaccc
     3241 ggaagaagat aggaaatcca caaaagaaga agagagtgag gtgccgaagt ccccggagcc
     3301 accacccgtc cccgtcctgg ctcccacgga ggggccgccc ctgcaggccc tgggccagcc
     3361 ctcaggctcc ttcatctgtg aaatgcccaa ctgtggggct gtgttcagct cccgacaggc
     3421 actgaatggc catgcccgca tccacggggg caccaaccag gtgaccaagg cccgaggtgc
     3481 catcccctct gggaagcaga agcctggtgg cacccagagt gggtactgtt cggtaaagag
     3541 ctcaccctct cacagcacca ccagcggcga gacagacccc accaccatct tcccctgcaa
     3601 ggagtgtggc aaagtcttct tcaagatcaa aagccgaaat gcacacatga aaactcacag
     3661 gcagcaggag gaacaacaga ggcaaaaggc tcagaaggcg gcttttgcag ctgagatggc
     3721 agccacgatt gagaggacta cggggcccgt gggggcgccg gggctgctgc ccctggacca
     3781 gctgagtctg atcaaaccca tcaaggatgt ggacatcctc gacgacgacg tcgtccagca
     3841 gttgggaggt gtcatggaag aggctgaagt tgtggacacc gatcttctct tggatgatca
     3901 agattcagtc ttgcttcagg gtgacgcaga actataaagc cctgtgtgtc acttagagac
     3961 agtgaaaacc cacggcctcc atcttcatta atcaggaaac ctggactgcc tgcttgtttt
     4021 gtaacccttt taaactacct gttttaaaag tggtcatttt attcaggttt agaaaaaaaa
     4081 atcctatttc ttttcctttt atttaaaaaa atttgttttt gtggggggtt gggggaataa
     4141 ataattggca caactatctt taagaggtgt ttcatctggg ctaccttctc atgaaatcat
     4201 tcccagtagg gactgaagct gaccttcatg ttccattgca ttcagatgtc aaccatcccg
     4261 gttgcctttt atcccaaagc ttgctgtgag tgtgtgtgtg tgagacgcag gcgaccctct
     4321 tagtactggg gtcttggggc caacttttcc catcaagcgt tactttgatt ctgttctgac
     4381 ctcattccat agtttgcagt gagcatggca tctttgcctg gagatactat gctaggggca
     4441 gctttccagg ggcaaagcaa gccctcgtgt tacacggctc tcctccagct cacacgacat
     4501 gtgaggagat gaccaaatgt gaaaacaggt ttcccctgtg ttgcccgtca tcctttggcc
     4561 cgttcacagg aatggagtac tgtataattt taggctttca ttcccagcag tgtttactga
     4621 ggacctggtt ttctagaaca ggtgtgtcct gtcctcttcc atgttccctg ggggctggtc
     4681 agctccaagt tgtgggtggc agagctgtgt ttcagcatga actgactaga gacccatctg
     4741 gaggcaaata ttaagttgcc aggactgctt tcacttcagg gtgattgaag gacacatatt
     4801 gaagtaccta gaatgccaga aagtgttcta ttgcccaaaa aacaaatcag aaaagcctat
     4861 tcttttttgc aacgctgtta atgattagtg gagttctgaa attactttgt gccacttgga
     4921 agtactgtga aaccgcattc actgggattt tgctgtaatt cacatccgct ggactgaagt
     4981 ttaccttgat gttagctata agaaatagtt ttctaacaca tacgatagca aatacaagac
     5041 aaatagcatt gaaggccaac aaaaatggct tcagatacac cttagctata atgtttgcat
     5101 tcaaacaatg aatgtattca tcacaagtca cttaccaaag cacttctaga cttctccaac
     5161 ctccatgact ttgctctgct tcctcctgtc cctgtcagca gggttgctgt ttgtacttga
     5221 aggtaataaa cctgtaatcc ttcaaaaatg ccatttagcc ccaggcttct gagctgagtc
     5281 agactgaccc atcccaccgt tagggcaaaa gtcaggctgg gacacagcgc cagtacagag
     5341 aggatcctgc ttcatgcaac tccccttttg gagttaatgc agcgtgattt cctgggccgg
     5401 tgttttcagg catcgcccac cccaggtatg ctggttccca gctccacgta ggtgtgccta
     5461 tcacgctggg ccactttgct gacaacattc atagcttgac atgagagaga atatcagcag
     5521 aagcatgaga gtaggacctg acgtctttga ctctgcaaaa gcatttagca cacactcatg
     5581 ggggggaact ggctgtgagc cacagcagcc ccacacagac agtggtctct gaacttcagg
     5641 aaagccatgg acagaaaaaa aaataaaatt cttttccatc attctatttt caaagaggtc
     5701 ttggcgtttt cctacatctt ttgtttagag ggggaaaaaa gtttcatttg ctgccatttc
     5761 agaaaggtta tgctatcctg ttttatccaa gcagttgtga gtcaggaact gcctgggcag
     5821 tgtgcatcaa ctttgtggcc gaaccattac agctgtcata tccttggctg atcgtctctc
     5881 ccagggacta ctgccctcca cttagtgtct gagggtaagc ctagaagggt gctgctattg
     5941 ggtctatgga agcttatcta tcaaaggagc aaacatccag aaaagtgttt ataaagcaaa
     6001 tgtattgcct ctgtttagag atttgcccag ctgttccagt tttaaacatt aaaaaataaa
     6061 ctcagttgcc atggcaaaaa tagaatgcac agcttactta taattttcca tgcagtatag
     6121 cataaggatt tttgacttga aacaaccaaa gaactcctcc ttaacgagac agttcaaatt
     6181 cctgaattag tatttcttga ctatcaactt aaagaatgga cttcctagta caatgttgca
     6241 cttatttttt tttctgaaat aattctgcct gcatgtatgt gttgtgtttt agcttctccc
     6301 cttaccccac cccaaagatc ttttcttcct aatggttaat gtctcaactc ggttactgtt
     6361 tactatcaga tggtttttca ttagtgaatt tagacctctt tgagaaagct tgtatataaa
     6421 aagttaacag atatatttta tggaaaaacc catcttattt tcaaatatat ttaactgctg
     6481 ttatatttta ttagaggaag gttgtaaata ttttctagga gttctattgt aaagaaaagt
     6541 atttttgaaa aaaattaatg taataaaaag gaaaacattt ttaaatagtg gttgtgattg
     6601 cttcctgttc tggcttcgtt atgttctatt ctcagcagat gaattgcatg ccttccatat
     6661 caggatgtaa tttattcagg tttgcactat tataagttga catcataata tctagtgtgc
     6721 ttaactgtat tttcccggaa tgcaagtccc ttggtccata ttaaagcact atgtatagca
     6781 tattcataat ttttcttttg taacgtgtgt atttttaata aggattttat gtaacatttt
     6841 ggcaacaaga ggaccgtatt ttctagtgaa ttttataata acattttgct aaaaatgttt
     6901 cttcctaggt cagtttttgt taaggtgaac caaaagtctt attttaccag gggtttaaaa
     6961 aaagtttgaa gcttgaaagc aaagttatat ttaaacatca tatgtaacaa ataaataaag
     7021 atgttttata gacttgtcct aaaaaggtgc attccttaaa aaaaaaaaaa agaaaaaaaa
     7081 aggaaactgg ggcattctag gttgtttccc ctccaagtga taagcttttt ttttttctta
     7141 attatcacaa tgcttcttca aaaagggaac cagggaaatt ttatttaaca cattctaatc
     7201 attagcctct cagaaagtta ttacagttcc tatagatggg cattcatcaa atggagatgt
     7261 aaccaaacag acactgtcat atttatttgt gaaaacctga ttcaatattg catcagctgc
     7321 tctgaaaata aaatattaat cttttgcgtt t
//
