LOCUS       XM_047419044            7710 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens transcriptional regulating factor 1
            (TRERF1), transcript variant X19, mRNA.
ACCESSION   XM_047419044
VERSION     XM_047419044.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7710
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..7710
                     /gene="TRERF1"
                     /gene_synonym="BCAR2; dJ139D8.5; HSA277276; RAPA;
                     TReP-132; TREP132"
                     /note="transcriptional regulating factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 581 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 30 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:55809"
                     /db_xref="HGNC:HGNC:18273"
                     /db_xref="MIM:610322"
     CDS             658..4296
                     /gene="TRERF1"
                     /gene_synonym="BCAR2; dJ139D8.5; HSA277276; RAPA;
                     TReP-132; TREP132"
                     /codon_start=1
                     /product="transcriptional-regulating factor 1 isoform X3"
                     /protein_id="XP_047275000.1"
                     /db_xref="GeneID:55809"
                     /db_xref="HGNC:HGNC:18273"
                     /db_xref="MIM:610322"
                     /translation="MGDQQLYKTNHVAHGSENLFYQQPPLGVHSGLNHNYGNAVTGGG
                     MDAPQASPISPHFPQDTRDGLGLPVGSKNLGQMDTSRQGGWGSHAGPGNHVQLRGNLA
                     NSNMMWGAPAQAEPTDGYQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVN
                     NMAQVLHTQSAVMDGAPDSALRQLLSQKPMEPPAPAIPSRYQQVPQQPHPGFTGGLSK
                     PALQVGQHPTQGHLYYDYQQPLAQVPVQGGQPLQAPQMLSQHMQQMQQHQYYPPQQQQ
                     QAGQQRISMQEIQTQPQQIRPSQPQPPPQQQQPQQLQLQQRQGSMQIPQYYQPQPMMQ
                     HLQEQQQQQMHLQPPSYHRDPHQYTPEQAHTVQLIPLGSMSQYYYQEPQQPYSHPLYQ
                     QSHLSQHQQREDSQLKTYSSDRQAQAMLSSHGDLGPPDTGMGDPASSDLTRVSSTLPH
                     RPLLSPSGIHLNNMGPQHQQLSPSAMWPQMHLPDGRAQPGSPESSGQPKGAFGEQFDA
                     KNKLTCSICLKEFKNLPALNGHMRSHGGMRASPNLKQEEGEKVLPPQPQPPLPPPPPP
                     PPPPQLPPEAESLTPMVMPVSVPVKLLPPKPSSQGFTNSTVAAPSARDKPASSMSDDE
                     MPVLEIPRKHQPSVPKAEEPLKTVQEKKKFRHRPEPLFIPPPPSYNPNPAASYSGATL
                     YQSQLRSPRVLGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGAHPQL
                     PLTPLTPTPRVLLCRSNSIDGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDIS
                     ALAQDTHKATLVWKPWPELENHDLQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAK
                     GDVMVALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQK
                     MVKSKTVAQCVEYYYTWKKIMRLGRKHRTRLAEIIDDCVTSEEEEELEEEEEEDPEED
                     RKSTKEEESEVPKSPEPPPVPVLAPTEGPPLQALGQPSGSFICEMPNCGADCRCHVTP
                     FLPQVFSSRQALNGHARIHGGTNQVTKARGAIPSGKQKPGGTQSGYCSVKSSPSHSTT
                     SGETDPTTIFPCKECGKVFFKIKSRNAHMKTHRQQEEQQRQKAQKAAFAAEMAATIER
                     TTGPVGAPGLLPLDQLSLIKPIKDVDILDDDVVQQLGGVMEEAEVVDTDLLLDDQDSV
                     LLQGDAEL"
ORIGIN      
        1 gcctttctcc ttttgcaaga aaataatttg acagtcgatt tgctgacaag ggaggaattt
       61 gcatcctgga tttaaaaaaa aaaaaaaggc cgagaggagc ttgggaacgg ttgctagggc
      121 tctgctcgcc ccccatctca ccccccaagc ggatactggt cttctcgtcg gattgcccat
      181 gcacttgttg cagaaacagc caaggccctg gctgtggaga atgctgaagg aagaagacgc
      241 agaagcagga cgaccctgaa agattcagcc tcttcatcct caaacaggac caggcctcct
      301 cttcccacct gtccagcagc atgaaagcag catgattggc cgaccgcagg agaagccccc
      361 agaaccaggc ccccaactca gccatctgcg gaggtcaagg tgtgagcgac gtctcctcac
      421 cacagtgctg tgtggtctat acctcagcca gggagaggat gtgaaacccc ccgccctgca
      481 catgagtggt acaggccaac aggaacacct ggctccagcc acgttcacag acatgtcagc
      541 cgtggagtag tgctgacact tttctctcag cttctcaggg tttcagtcct tttgggtttg
      601 ttttatttac cttttttatg gttttgtggc tggacgttca caaccaaggc agacagcatg
      661 ggtgaccagc aactgtacaa gaccaaccat gtggcccatg gtagtgagaa ccttttctac
      721 caacagccac cacttggcgt ccacagcggg ctgaaccaca actatgggaa tgcagttaca
      781 gggggcggaa tggatgcccc tcaggcctcg ccaatctccc cccacttccc tcaagataca
      841 cgggatggtc tgggcttgcc tgttggctcc aaaaaccttg gccaaatgga tacctcgagg
      901 cagggagggt ggggaagtca tgcagggcct ggaaaccatg tccagctacg tggaaacctg
      961 gccaactcaa acatgatgtg gggggcacca gcccaggctg agcccactga tggctaccaa
     1021 tacacctact cccaggccag cgagatccgg acccagaagc ttaccagcgg tgtcttacac
     1081 aagctggact ctttcaccca ggtgtttgcc aaccaaaacc tgcgaattca ggtcaacaat
     1141 atggcccagg tgctgcacac tcagtcagca gtgatggatg gagcccctga cagtgctctc
     1201 cgccagctgc tgtctcagaa gcccatggag cccccagcac cggctatccc ttcccgctac
     1261 cagcaggtgc cccagcagcc tcaccctggt ttcactggtg ggctgtccaa accagctctt
     1321 caggtcgggc agcaccctac ccaagggcac ctgtattatg actaccagca gcctctggct
     1381 caggtgccag tgcagggagg acagccactg caggccccac agatgctgtc acagcacatg
     1441 caacagatgc agcagcacca gtattaccca ccgcagcaac agcagcaagc cgggcaacag
     1501 cgtatctcca tgcaagaaat acagacgcag ccgcaacaaa ttcgcccatc acagccacag
     1561 ccgccgccac agcagcagca gccgcagcag ctacagctgc agcagcggca gggttcaatg
     1621 cagatacctc agtattatca gccccaaccc atgatgcagc acttgcaaga gcagcagcag
     1681 caacagatgc acctgcagcc tccttcttat cacagggacc ctcaccagta taccccagag
     1741 caggcacaca ctgtccagct gattcccctg ggctccatgt cccagtacta ctaccaggag
     1801 ccccagcagc cctacagcca ccccctctac cagcagagcc acctgtccca gcaccagcag
     1861 cgtgaggaca gtcagctgaa gacctactct agtgacagac aggcccaggc catgctgagc
     1921 tcccatgggg acctggggcc tcctgacaca ggaatgggag acccagcgag ctcagatctg
     1981 acccgggtca gcagcaccct cccccatcgc cccctcctat cccccagtgg gatccacctc
     2041 aacaacatgg ggcctcagca tcagcagctg tctcccagtg ccatgtggcc ccagatgcac
     2101 ctacctgatg ggagagccca gccagggtcc cctgagtcaa gtggccaacc caaaggagcg
     2161 tttggggagc agtttgatgc caagaacaag ctgacatgct ccatctgcct gaaggagttc
     2221 aagaacctgc ctgccctgaa tggccacatg cggtcccacg ggggaatgag ggcctccccc
     2281 aacctcaaac aggaggaagg agagaaggtc ctgccgcctc agccccagcc accactgccg
     2341 cctccgcctc cgcctccgcc gccaccacag ctccctcccg aggcagaaag cctcacgcct
     2401 atggtcatgc ccgtgtctgt ccctgtcaag cttctcccgc ccaagcccag ctctcagggg
     2461 ttcaccaaca gcaccgttgc cgccccctcc gccagagaca agccagccag ctcgatgtcg
     2521 gacgacgaga tgcctgtgct cgaaatcccc aggaagcatc agccgagtgt gcccaaagcc
     2581 gaggagcccc tcaagaccgt gcaggagaag aaaaagttcc ggcaccggcc ggaacctctc
     2641 ttcatcccgc cgccgccctc ctacaacccg aaccccgctg cctcctactc gggcgccacc
     2701 ctgtaccaga gccagctgcg ctccccgcgc gtcctcgggg accacctgct cctggacccc
     2761 acccacgagc tgccccctta cacgccccca cccatgctga gcccggtgcg ccagggctcg
     2821 gggctcttca gcaatgtcct catctccggc cacggccctg gcgcccaccc gcagctgccc
     2881 ctgacgcccc tgacgcccac accacgggtg ctgctgtgtc gctccaacag catcgatggc
     2941 agcaacgtga cggtcacccc agggcctgga gagcagactg tagatgttga accacgcatc
     3001 aacattggct tgagattcca agcagaaatc cctgaactcc aagatatctc tgccctggcc
     3061 caggacacac acaaggccac actggtatgg aagccctggc cagaactaga aaaccatgac
     3121 ctccagcaaa gagtggagaa tcttctgaat ttgtgctgtt ccagtgcatt gccaggtgga
     3181 gggaccaatt ctgaatttgc tttgcactct ctgtttgagg ccaaaggtga tgtgatggtt
     3241 gctctggaaa tgctgctact gcggaagcct gtcaggttaa aatgtcatcc tttagcaaat
     3301 taccactatg ccggttcgga caagtggacc tccctagaaa gaaaactgtt taacaaagca
     3361 ctagccactt acagcaaaga ctttattttt gtacagaaga tggtgaagtc caagacggtg
     3421 gctcagtgcg tggagtacta ctacacgtgg aaaaagatca tgcggctggg gcggaaacac
     3481 cggacacgcc tggcagaaat catcgacgat tgtgtgacaa gtgaagaaga agaagagtta
     3541 gaggaggagg aggaggagga cccggaagaa gataggaaat ccacaaaaga agaagagagt
     3601 gaggtgccga agtccccgga gccaccaccc gtccccgtcc tggctcccac ggaggggccg
     3661 cccctgcagg ccctgggcca gccctcaggc tccttcatct gtgaaatgcc caactgtggg
     3721 gctgactgta gatgtcatgt cactcccttt cttccccagg tgttcagctc ccgacaggca
     3781 ctgaatggcc atgcccgcat ccacgggggc accaaccagg tgaccaaggc ccgaggtgcc
     3841 atcccctctg ggaagcagaa gcctggtggc acccagagtg ggtactgttc ggtaaagagc
     3901 tcaccctctc acagcaccac cagcggcgag acagacccca ccaccatctt cccctgcaag
     3961 gagtgtggca aagtcttctt caagatcaaa agccgaaatg cacacatgaa aactcacagg
     4021 cagcaggagg aacaacagag gcaaaaggct cagaaggcgg cttttgcagc tgagatggca
     4081 gccacgattg agaggactac ggggcccgtg ggggcgccgg ggctgctgcc cctggaccag
     4141 ctgagtctga tcaaacccat caaggatgtg gacatcctcg acgacgacgt cgtccagcag
     4201 ttgggaggtg tcatggaaga ggctgaagtt gtggacaccg atcttctctt ggatgatcaa
     4261 gattcagtct tgcttcaggg tgacgcagaa ctataaagcc ctgtgtgtca cttagagaca
     4321 gtgaaaaccc acggcctcca tcttcattaa tcaggaaacc tggactgcct gcttgttttg
     4381 taaccctttt aaactacctg ttttaaaagt ggtcatttta ttcaggttta gaaaaaaaaa
     4441 tcctatttct tttcctttta tttaaaaaaa tttgtttttg tggggggttg ggggaataaa
     4501 taattggcac aactatcttt aagaggtgtt tcatctgggc taccttctca tgaaatcatt
     4561 cccagtaggg actgaagctg accttcatgt tccattgcat tcagatgtca accatcccgg
     4621 ttgcctttta tcccaaagct tgctgtgagt gtgtgtgtgt gagacgcagg cgaccctctt
     4681 agtactgggg tcttggggcc aacttttccc atcaagcgtt actttgattc tgttctgacc
     4741 tcattccata gtttgcagtg agcatggcat ctttgcctgg agatactatg ctaggggcag
     4801 ctttccaggg gcaaagcaag ccctcgtgtt acacggctct cctccagctc acacgacatg
     4861 tgaggagatg accaaatgtg aaaacaggtt tcccctgtgt tgcccgtcat cctttggccc
     4921 gttcacagga atggagtact gtataatttt aggctttcat tcccagcagt gtttactgag
     4981 gacctggttt tctagaacag gtgtgtcctg tcctcttcca tgttccctgg gggctggtca
     5041 gctccaagtt gtgggtggca gagctgtgtt tcagcatgaa ctgactagag acccatctgg
     5101 aggcaaatat taagttgcca ggactgcttt cacttcaggg tgattgaagg acacatattg
     5161 aagtacctag aatgccagaa agtgttctat tgcccaaaaa acaaatcaga aaagcctatt
     5221 cttttttgca acgctgttaa tgattagtgg agttctgaaa ttactttgtg ccacttggaa
     5281 gtactgtgaa accgcattca ctgggatttt gctgtaattc acatccgctg gactgaagtt
     5341 taccttgatg ttagctataa gaaatagttt tctaacacat acgatagcaa atacaagaca
     5401 aatagcattg aaggccaaca aaaatggctt cagatacacc ttagctataa tgtttgcatt
     5461 caaacaatga atgtattcat cacaagtcac ttaccaaagc acttctagac ttctccaacc
     5521 tccatgactt tgctctgctt cctcctgtcc ctgtcagcag ggttgctgtt tgtacttgaa
     5581 ggtaataaac ctgtaatcct tcaaaaatgc catttagccc caggcttctg agctgagtca
     5641 gactgaccca tcccaccgtt agggcaaaag tcaggctggg acacagcgcc agtacagaga
     5701 ggatcctgct tcatgcaact ccccttttgg agttaatgca gcgtgatttc ctgggccggt
     5761 gttttcaggc atcgcccacc ccaggtatgc tggttcccag ctccacgtag gtgtgcctat
     5821 cacgctgggc cactttgctg acaacattca tagcttgaca tgagagagaa tatcagcaga
     5881 agcatgagag taggacctga cgtctttgac tctgcaaaag catttagcac acactcatgg
     5941 gggggaactg gctgtgagcc acagcagccc cacacagaca gtggtctctg aacttcagga
     6001 aagccatgga cagaaaaaaa aataaaattc ttttccatca ttctattttc aaagaggtct
     6061 tggcgttttc ctacatcttt tgtttagagg gggaaaaaag tttcatttgc tgccatttca
     6121 gaaaggttat gctatcctgt tttatccaag cagttgtgag tcaggaactg cctgggcagt
     6181 gtgcatcaac tttgtggccg aaccattaca gctgtcatat ccttggctga tcgtctctcc
     6241 cagggactac tgccctccac ttagtgtctg agggtaagcc tagaagggtg ctgctattgg
     6301 gtctatggaa gcttatctat caaaggagca aacatccaga aaagtgttta taaagcaaat
     6361 gtattgcctc tgtttagaga tttgcccagc tgttccagtt ttaaacatta aaaaataaac
     6421 tcagttgcca tggcaaaaat agaatgcaca gcttacttat aattttccat gcagtatagc
     6481 ataaggattt ttgacttgaa acaaccaaag aactcctcct taacgagaca gttcaaattc
     6541 ctgaattagt atttcttgac tatcaactta aagaatggac ttcctagtac aatgttgcac
     6601 ttattttttt ttctgaaata attctgcctg catgtatgtg ttgtgtttta gcttctcccc
     6661 ttaccccacc ccaaagatct tttcttccta atggttaatg tctcaactcg gttactgttt
     6721 actatcagat ggtttttcat tagtgaattt agacctcttt gagaaagctt gtatataaaa
     6781 agttaacaga tatattttat ggaaaaaccc atcttatttt caaatatatt taactgctgt
     6841 tatattttat tagaggaagg ttgtaaatat tttctaggag ttctattgta aagaaaagta
     6901 tttttgaaaa aaattaatgt aataaaaagg aaaacatttt taaatagtgg ttgtgattgc
     6961 ttcctgttct ggcttcgtta tgttctattc tcagcagatg aattgcatgc cttccatatc
     7021 aggatgtaat ttattcaggt ttgcactatt ataagttgac atcataatat ctagtgtgct
     7081 taactgtatt ttcccggaat gcaagtccct tggtccatat taaagcacta tgtatagcat
     7141 attcataatt tttcttttgt aacgtgtgta tttttaataa ggattttatg taacattttg
     7201 gcaacaagag gaccgtattt tctagtgaat tttataataa cattttgcta aaaatgtttc
     7261 ttcctaggtc agtttttgtt aaggtgaacc aaaagtctta ttttaccagg ggtttaaaaa
     7321 aagtttgaag cttgaaagca aagttatatt taaacatcat atgtaacaaa taaataaaga
     7381 tgttttatag acttgtccta aaaaggtgca ttccttaaaa aaaaaaaaaa gaaaaaaaaa
     7441 ggaaactggg gcattctagg ttgtttcccc tccaagtgat aagctttttt tttttcttaa
     7501 ttatcacaat gcttcttcaa aaagggaacc agggaaattt tatttaacac attctaatca
     7561 ttagcctctc agaaagttat tacagttcct atagatgggc attcatcaaa tggagatgta
     7621 accaaacaga cactgtcata tttatttgtg aaaacctgat tcaatattgc atcagctgct
     7681 ctgaaaataa aatattaatc ttttgcgttt
//
