LOCUS       XM_047419029            7696 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens transcriptional regulating factor 1
            (TRERF1), transcript variant X5, mRNA.
ACCESSION   XM_047419029
VERSION     XM_047419029.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7696
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..7696
                     /gene="TRERF1"
                     /gene_synonym="BCAR2; dJ139D8.5; HSA277276; RAPA;
                     TReP-132; TREP132"
                     /note="transcriptional regulating factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 554 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     14 samples with support for all annotated introns"
                     /db_xref="GeneID:55809"
                     /db_xref="HGNC:HGNC:18273"
                     /db_xref="MIM:610322"
     CDS             584..4282
                     /gene="TRERF1"
                     /gene_synonym="BCAR2; dJ139D8.5; HSA277276; RAPA;
                     TReP-132; TREP132"
                     /codon_start=1
                     /product="transcriptional-regulating factor 1 isoform X1"
                     /protein_id="XP_047274985.1"
                     /db_xref="GeneID:55809"
                     /db_xref="HGNC:HGNC:18273"
                     /db_xref="MIM:610322"
                     /translation="MGDQQLYKTNHVAHGSENLFYQQPPLGVHSGLNHNYGNAVTGGG
                     MDAPQASPISPHFPQDTRDGLGLPVGSKNLGQMDTSRQGGWGSHAGPGNHVQLRGNLA
                     NSNMMWGAPAQAEPTDGYQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVN
                     NMAQVLHTQSAVMDGAPDSALRQLLSQKPMEPPAPAIPSRYQQVPQQPHPGFTGGLSK
                     PALQVGQHPTQGHLYYDYQQPLAQVPVQGGQPLQAPQMLSQHMQQMQQHQYYPPQQQQ
                     QAGQQRISMQEIQTQPQQIRPSQPQPPPQQQQPQQLQLQQRQGSMQIPQYYQPQPMMQ
                     HLQEQQQQQMHLQPPSYHRDPHQYTPEQAHTVQLIPLGSMSQYYYQEPQQPYSHPLYQ
                     QSHLSQHQQREDSQLKTYSSDRQAQAMLSSHGDLGPPDTGMGDPASSDLTRVSSTLPH
                     RPLLSPSGIHLNNMGPQHQQLSPSAMWPQMHLPDGRAQPGSPESSGQPKGAFGEQFDA
                     KNKLTCSICLKEFKNLPALNGHMRSHGGMRASPNLKQEEGEKVLPPQPQPPLPPPPPP
                     PPPPQLPPEAESLTPMVMPVSVPVKLLPPKPSSQGFTNSTVAAPSARDKPASSMSDDE
                     MPVLVRMTLSPPHSPQGAAPRTPAEIPRKHQPSVPKAEEPLKTVQEKKKFRHRPEPLF
                     IPPPPSYNPNPAASYSGATLYQSQLRSPRVLGDHLLLDPTHELPPYTPPPMLSPVRQG
                     SGLFSNVLISGHGPGAHPQLPLTPLTPTPRVLLCRSNSIDGSNVTVTPGPGEQTVDVE
                     PRINIGLRFQAEIPELQDISALAQDTHKATLVWKPWPELENHDLQQRVENLLNLCCSS
                     ALPGGGTNSEFALHSLFEAKGDVMVALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLE
                     RKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRLAEIIDDC
                     VTSEEEEELEEEEEEDPEEDRKSTKEEESEVPKSPEPPPVPVLAPTEGPPLQALGQPS
                     GSFICEMPNCGADCRCHVTPFLPQVFSSRQALNGHARIHGGTNQVTKARGAIPSGKQK
                     PGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTHRQQEEQ
                     QRQKAQKAAFAAEMAATIERTTGPVGAPGLLPLDQLSLIKPIKDVDILDDDVVQQLGG
                     VMEEAEVVDTDLLLDDQDSVLLQGDAEL"
ORIGIN      
        1 cttccctcta agcgatggct gagaggcggt gcatgcagat ggggactctg ctcgcccccc
       61 atctcacccc ccaagcggat actggtcttc tcgtcggatt gcccatgcac ttgttgcaga
      121 aacagccaag gccctggctg tggagaatgc tgaaggaaga agacgcagaa gcaggacgac
      181 cctgaaagat tcagcctctt catcctcaaa caggaccagg cctcctcttc ccacctgtcc
      241 agcagcatga aagcagcatg attggccgac cgcaggagaa gcccccagaa ccaggccccc
      301 aactcagcca tctgcggagg tcaaggtgtg agcgacgtct cctcaccaca gtgctgtgtg
      361 gtctatacct cagccaggga gaggatgtga aaccccccgc cctgcacatg agtggtacag
      421 gccaacagga acacctggct ccagccacgt tcacagacat gtcagccgtg gagtagtgct
      481 gacacttttc tctcagcttc tcagggtttc agtccttttg ggtttgtttt atttaccttt
      541 tttatggttt tgtggctgga cgttcacaac caaggcagac agcatgggtg accagcaact
      601 gtacaagacc aaccatgtgg cccatggtag tgagaacctt ttctaccaac agccaccact
      661 tggcgtccac agcgggctga accacaacta tgggaatgca gttacagggg gcggaatgga
      721 tgcccctcag gcctcgccaa tctcccccca cttccctcaa gatacacggg atggtctggg
      781 cttgcctgtt ggctccaaaa accttggcca aatggatacc tcgaggcagg gagggtgggg
      841 aagtcatgca gggcctggaa accatgtcca gctacgtgga aacctggcca actcaaacat
      901 gatgtggggg gcaccagccc aggctgagcc cactgatggc taccaataca cctactccca
      961 ggccagcgag atccggaccc agaagcttac cagcggtgtc ttacacaagc tggactcttt
     1021 cacccaggtg tttgccaacc aaaacctgcg aattcaggtc aacaatatgg cccaggtgct
     1081 gcacactcag tcagcagtga tggatggagc ccctgacagt gctctccgcc agctgctgtc
     1141 tcagaagccc atggagcccc cagcaccggc tatcccttcc cgctaccagc aggtgcccca
     1201 gcagcctcac cctggtttca ctggtgggct gtccaaacca gctcttcagg tcgggcagca
     1261 ccctacccaa gggcacctgt attatgacta ccagcagcct ctggctcagg tgccagtgca
     1321 gggaggacag ccactgcagg ccccacagat gctgtcacag cacatgcaac agatgcagca
     1381 gcaccagtat tacccaccgc agcaacagca gcaagccggg caacagcgta tctccatgca
     1441 agaaatacag acgcagccgc aacaaattcg cccatcacag ccacagccgc cgccacagca
     1501 gcagcagccg cagcagctac agctgcagca gcggcagggt tcaatgcaga tacctcagta
     1561 ttatcagccc caacccatga tgcagcactt gcaagagcag cagcagcaac agatgcacct
     1621 gcagcctcct tcttatcaca gggaccctca ccagtatacc ccagagcagg cacacactgt
     1681 ccagctgatt cccctgggct ccatgtccca gtactactac caggagcccc agcagcccta
     1741 cagccacccc ctctaccagc agagccacct gtcccagcac cagcagcgtg aggacagtca
     1801 gctgaagacc tactctagtg acagacaggc ccaggccatg ctgagctccc atggggacct
     1861 ggggcctcct gacacaggaa tgggagaccc agcgagctca gatctgaccc gggtcagcag
     1921 caccctcccc catcgccccc tcctatcccc cagtgggatc cacctcaaca acatggggcc
     1981 tcagcatcag cagctgtctc ccagtgccat gtggccccag atgcacctac ctgatgggag
     2041 agcccagcca gggtcccctg agtcaagtgg ccaacccaaa ggagcgtttg gggagcagtt
     2101 tgatgccaag aacaagctga catgctccat ctgcctgaag gagttcaaga acctgcctgc
     2161 cctgaatggc cacatgcggt cccacggggg aatgagggcc tcccccaacc tcaaacagga
     2221 ggaaggagag aaggtcctgc cgcctcagcc ccagccacca ctgccgcctc cgcctccgcc
     2281 tccgccgcca ccacagctcc ctcccgaggc agaaagcctc acgcctatgg tcatgcccgt
     2341 gtctgtccct gtcaagcttc tcccgcccaa gcccagctct caggggttca ccaacagcac
     2401 cgttgccgcc ccctccgcca gagacaagcc agccagctcg atgtcggacg acgagatgcc
     2461 tgtgctcgtg aggatgaccc tctctccccc acactcaccc caaggggctg ccccccgcac
     2521 gcctgctgaa atccccagga agcatcagcc gagtgtgccc aaagccgagg agcccctcaa
     2581 gaccgtgcag gagaagaaaa agttccggca ccggccggaa cctctcttca tcccgccgcc
     2641 gccctcctac aacccgaacc ccgctgcctc ctactcgggc gccaccctgt accagagcca
     2701 gctgcgctcc ccgcgcgtcc tcggggacca cctgctcctg gaccccaccc acgagctgcc
     2761 cccttacacg cccccaccca tgctgagccc ggtgcgccag ggctcggggc tcttcagcaa
     2821 tgtcctcatc tccggccacg gccctggcgc ccacccgcag ctgcccctga cgcccctgac
     2881 gcccacacca cgggtgctgc tgtgtcgctc caacagcatc gatggcagca acgtgacggt
     2941 caccccaggg cctggagagc agactgtaga tgttgaacca cgcatcaaca ttggcttgag
     3001 attccaagca gaaatccctg aactccaaga tatctctgcc ctggcccagg acacacacaa
     3061 ggccacactg gtatggaagc cctggccaga actagaaaac catgacctcc agcaaagagt
     3121 ggagaatctt ctgaatttgt gctgttccag tgcattgcca ggtggaggga ccaattctga
     3181 atttgctttg cactctctgt ttgaggccaa aggtgatgtg atggttgctc tggaaatgct
     3241 gctactgcgg aagcctgtca ggttaaaatg tcatccttta gcaaattacc actatgccgg
     3301 ttcggacaag tggacctccc tagaaagaaa actgtttaac aaagcactag ccacttacag
     3361 caaagacttt atttttgtac agaagatggt gaagtccaag acggtggctc agtgcgtgga
     3421 gtactactac acgtggaaaa agatcatgcg gctggggcgg aaacaccgga cacgcctggc
     3481 agaaatcatc gacgattgtg tgacaagtga agaagaagaa gagttagagg aggaggagga
     3541 ggaggacccg gaagaagata ggaaatccac aaaagaagaa gagagtgagg tgccgaagtc
     3601 cccggagcca ccacccgtcc ccgtcctggc tcccacggag gggccgcccc tgcaggccct
     3661 gggccagccc tcaggctcct tcatctgtga aatgcccaac tgtggggctg actgtagatg
     3721 tcatgtcact ccctttcttc cccaggtgtt cagctcccga caggcactga atggccatgc
     3781 ccgcatccac gggggcacca accaggtgac caaggcccga ggtgccatcc cctctgggaa
     3841 gcagaagcct ggtggcaccc agagtgggta ctgttcggta aagagctcac cctctcacag
     3901 caccaccagc ggcgagacag accccaccac catcttcccc tgcaaggagt gtggcaaagt
     3961 cttcttcaag atcaaaagcc gaaatgcaca catgaaaact cacaggcagc aggaggaaca
     4021 acagaggcaa aaggctcaga aggcggcttt tgcagctgag atggcagcca cgattgagag
     4081 gactacgggg cccgtggggg cgccggggct gctgcccctg gaccagctga gtctgatcaa
     4141 acccatcaag gatgtggaca tcctcgacga cgacgtcgtc cagcagttgg gaggtgtcat
     4201 ggaagaggct gaagttgtgg acaccgatct tctcttggat gatcaagatt cagtcttgct
     4261 tcagggtgac gcagaactat aaagccctgt gtgtcactta gagacagtga aaacccacgg
     4321 cctccatctt cattaatcag gaaacctgga ctgcctgctt gttttgtaac ccttttaaac
     4381 tacctgtttt aaaagtggtc attttattca ggtttagaaa aaaaaatcct atttcttttc
     4441 cttttattta aaaaaatttg tttttgtggg gggttggggg aataaataat tggcacaact
     4501 atctttaaga ggtgtttcat ctgggctacc ttctcatgaa atcattccca gtagggactg
     4561 aagctgacct tcatgttcca ttgcattcag atgtcaacca tcccggttgc cttttatccc
     4621 aaagcttgct gtgagtgtgt gtgtgtgaga cgcaggcgac cctcttagta ctggggtctt
     4681 ggggccaact tttcccatca agcgttactt tgattctgtt ctgacctcat tccatagttt
     4741 gcagtgagca tggcatcttt gcctggagat actatgctag gggcagcttt ccaggggcaa
     4801 agcaagccct cgtgttacac ggctctcctc cagctcacac gacatgtgag gagatgacca
     4861 aatgtgaaaa caggtttccc ctgtgttgcc cgtcatcctt tggcccgttc acaggaatgg
     4921 agtactgtat aattttaggc tttcattccc agcagtgttt actgaggacc tggttttcta
     4981 gaacaggtgt gtcctgtcct cttccatgtt ccctgggggc tggtcagctc caagttgtgg
     5041 gtggcagagc tgtgtttcag catgaactga ctagagaccc atctggaggc aaatattaag
     5101 ttgccaggac tgctttcact tcagggtgat tgaaggacac atattgaagt acctagaatg
     5161 ccagaaagtg ttctattgcc caaaaaacaa atcagaaaag cctattcttt tttgcaacgc
     5221 tgttaatgat tagtggagtt ctgaaattac tttgtgccac ttggaagtac tgtgaaaccg
     5281 cattcactgg gattttgctg taattcacat ccgctggact gaagtttacc ttgatgttag
     5341 ctataagaaa tagttttcta acacatacga tagcaaatac aagacaaata gcattgaagg
     5401 ccaacaaaaa tggcttcaga tacaccttag ctataatgtt tgcattcaaa caatgaatgt
     5461 attcatcaca agtcacttac caaagcactt ctagacttct ccaacctcca tgactttgct
     5521 ctgcttcctc ctgtccctgt cagcagggtt gctgtttgta cttgaaggta ataaacctgt
     5581 aatccttcaa aaatgccatt tagccccagg cttctgagct gagtcagact gacccatccc
     5641 accgttaggg caaaagtcag gctgggacac agcgccagta cagagaggat cctgcttcat
     5701 gcaactcccc ttttggagtt aatgcagcgt gatttcctgg gccggtgttt tcaggcatcg
     5761 cccaccccag gtatgctggt tcccagctcc acgtaggtgt gcctatcacg ctgggccact
     5821 ttgctgacaa cattcatagc ttgacatgag agagaatatc agcagaagca tgagagtagg
     5881 acctgacgtc tttgactctg caaaagcatt tagcacacac tcatgggggg gaactggctg
     5941 tgagccacag cagccccaca cagacagtgg tctctgaact tcaggaaagc catggacaga
     6001 aaaaaaaata aaattctttt ccatcattct attttcaaag aggtcttggc gttttcctac
     6061 atcttttgtt tagaggggga aaaaagtttc atttgctgcc atttcagaaa ggttatgcta
     6121 tcctgtttta tccaagcagt tgtgagtcag gaactgcctg ggcagtgtgc atcaactttg
     6181 tggccgaacc attacagctg tcatatcctt ggctgatcgt ctctcccagg gactactgcc
     6241 ctccacttag tgtctgaggg taagcctaga agggtgctgc tattgggtct atggaagctt
     6301 atctatcaaa ggagcaaaca tccagaaaag tgtttataaa gcaaatgtat tgcctctgtt
     6361 tagagatttg cccagctgtt ccagttttaa acattaaaaa ataaactcag ttgccatggc
     6421 aaaaatagaa tgcacagctt acttataatt ttccatgcag tatagcataa ggatttttga
     6481 cttgaaacaa ccaaagaact cctccttaac gagacagttc aaattcctga attagtattt
     6541 cttgactatc aacttaaaga atggacttcc tagtacaatg ttgcacttat ttttttttct
     6601 gaaataattc tgcctgcatg tatgtgttgt gttttagctt ctccccttac cccaccccaa
     6661 agatcttttc ttcctaatgg ttaatgtctc aactcggtta ctgtttacta tcagatggtt
     6721 tttcattagt gaatttagac ctctttgaga aagcttgtat ataaaaagtt aacagatata
     6781 ttttatggaa aaacccatct tattttcaaa tatatttaac tgctgttata ttttattaga
     6841 ggaaggttgt aaatattttc taggagttct attgtaaaga aaagtatttt tgaaaaaaat
     6901 taatgtaata aaaaggaaaa catttttaaa tagtggttgt gattgcttcc tgttctggct
     6961 tcgttatgtt ctattctcag cagatgaatt gcatgccttc catatcagga tgtaatttat
     7021 tcaggtttgc actattataa gttgacatca taatatctag tgtgcttaac tgtattttcc
     7081 cggaatgcaa gtcccttggt ccatattaaa gcactatgta tagcatattc ataatttttc
     7141 ttttgtaacg tgtgtatttt taataaggat tttatgtaac attttggcaa caagaggacc
     7201 gtattttcta gtgaatttta taataacatt ttgctaaaaa tgtttcttcc taggtcagtt
     7261 tttgttaagg tgaaccaaaa gtcttatttt accaggggtt taaaaaaagt ttgaagcttg
     7321 aaagcaaagt tatatttaaa catcatatgt aacaaataaa taaagatgtt ttatagactt
     7381 gtcctaaaaa ggtgcattcc ttaaaaaaaa aaaaaagaaa aaaaaaggaa actggggcat
     7441 tctaggttgt ttcccctcca agtgataagc tttttttttt tcttaattat cacaatgctt
     7501 cttcaaaaag ggaaccaggg aaattttatt taacacattc taatcattag cctctcagaa
     7561 agttattaca gttcctatag atgggcattc atcaaatgga gatgtaacca aacagacact
     7621 gtcatattta tttgtgaaaa cctgattcaa tattgcatca gctgctctga aaataaaata
     7681 ttaatctttt gcgttt
//
