LOCUS       NM_001139444            2681 bp    mRNA    linear   PRI 08-JUN-2024
DEFINITION  Homo sapiens trafficking protein particle complex subunit 3L
            (TRAPPC3L), mRNA.
ACCESSION   NM_001139444 XM_001723259
VERSION     NM_001139444.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Scrivens,P.J., Noueihed,B., Shahrzad,N., Hul,S., Brunet,S. and
            Sacher,M.
  TITLE     C4orf41 and TTC-15 are mammalian TRAPP components with a role at an
            early stage in ER-to-Golgi trafficking
  JOURNAL   Mol Biol Cell 22 (12), 2083-2093 (2011)
   PUBMED   21525244
REFERENCE   2  (bases 1 to 2681)
  AUTHORS   Mungall,A.J., Palmer,S.A., Sims,S.K., Edwards,C.A., Ashurst,J.L.,
            Wilming,L., Jones,M.C., Horton,R., Hunt,S.E., Scott,C.E.,
            Gilbert,J.G., Clamp,M.E., Bethel,G., Milne,S., Ainscough,R.,
            Almeida,J.P., Ambrose,K.D., Andrews,T.D., Ashwell,R.I.,
            Babbage,A.K., Bagguley,C.L., Bailey,J., Banerjee,R., Barker,D.J.,
            Barlow,K.F., Bates,K., Beare,D.M., Beasley,H., Beasley,O.,
            Bird,C.P., Blakey,S., Bray-Allen,S., Brook,J., Brown,A.J.,
            Brown,J.Y., Burford,D.C., Burrill,W., Burton,J., Carder,C.,
            Carter,N.P., Chapman,J.C., Clark,S.Y., Clark,G., Clee,C.M.,
            Clegg,S., Cobley,V., Collier,R.E., Collins,J.E., Colman,L.K.,
            Corby,N.R., Coville,G.J., Culley,K.M., Dhami,P., Davies,J.,
            Dunn,M., Earthrowl,M.E., Ellington,A.E., Evans,K.A., Faulkner,L.,
            Francis,M.D., Frankish,A., Frankland,J., French,L., Garner,P.,
            Garnett,J., Ghori,M.J., Gilby,L.M., Gillson,C.J., Glithero,R.J.,
            Grafham,D.V., Grant,M., Gribble,S., Griffiths,C., Griffiths,M.,
            Hall,R., Halls,K.S., Hammond,S., Harley,J.L., Hart,E.A.,
            Heath,P.D., Heathcott,R., Holmes,S.J., Howden,P.J., Howe,K.L.,
            Howell,G.R., Huckle,E., Humphray,S.J., Humphries,M.D., Hunt,A.R.,
            Johnson,C.M., Joy,A.A., Kay,M., Keenan,S.J., Kimberley,A.M.,
            King,A., Laird,G.K., Langford,C., Lawlor,S., Leongamornlert,D.A.,
            Leversha,M., Lloyd,C.R., Lloyd,D.M., Loveland,J.E., Lovell,J.,
            Martin,S., Mashreghi-Mohammadi,M., Maslen,G.L., Matthews,L.,
            McCann,O.T., McLaren,S.J., McLay,K., McMurray,A., Moore,M.J.,
            Mullikin,J.C., Niblett,D., Nickerson,T., Novik,K.L., Oliver,K.,
            Overton-Larty,E.K., Parker,A., Patel,R., Pearce,A.V., Peck,A.I.,
            Phillimore,B., Phillips,S., Plumb,R.W., Porter,K.M., Ramsey,Y.,
            Ranby,S.A., Rice,C.M., Ross,M.T., Searle,S.M., Sehra,H.K.,
            Sheridan,E., Skuce,C.D., Smith,S., Smith,M., Spraggon,L.,
            Squares,S.L., Steward,C.A., Sycamore,N., Tamlyn-Hall,G., Tester,J.,
            Theaker,A.J., Thomas,D.W., Thorpe,A., Tracey,A., Tromans,A.,
            Tubby,B., Wall,M., Wallis,J.M., West,A.P., White,S.S.,
            Whitehead,S.L., Whittaker,H., Wild,A., Willey,D.J., Wilmer,T.E.,
            Wood,J.M., Wray,P.W., Wyatt,J.C., Young,L., Younger,R.M.,
            Bentley,D.R., Coulson,A., Durbin,R., Hubbard,T., Sulston,J.E.,
            Dunham,I., Rogers,J. and Beck,S.
  TITLE     The DNA sequence and analysis of human chromosome 6
  JOURNAL   Nature 425 (6960), 805-811 (2003)
   PUBMED   14574404
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL121953.21, BX280366.1, DY655209.1, AI745276.1, BE501784.1,
            AI090359.1 and AL445224.8.
            
            On May 17, 2019 this sequence version replaced NM_001139444.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189658.135607.1,
                                           SRR5189658.54254.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA1965299,
                                           SAMEA1966682 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000368602.4/ ENSP00000357591.3
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                AL121953.21        41687-41760         c
            75-556              BX280366.1         1-482
            557-631             DY655209.1         290-364
            632-1081            AI745276.1         1-450               c
            1082-1178           BE501784.1         21-117              c
            1179-1187           AI090359.1         6-14                c
            1188-2681           AL445224.8         682-2175            c
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
                     /map="6q22.1"
     gene            1..2681
                     /gene="TRAPPC3L"
                     /gene_synonym="bA259P20.2; BET3L"
                     /note="trafficking protein particle complex subunit 3L"
                     /db_xref="GeneID:100128327"
                     /db_xref="HGNC:HGNC:21090"
                     /db_xref="MIM:614137"
     exon            1..212
                     /gene="TRAPPC3L"
                     /gene_synonym="bA259P20.2; BET3L"
                     /inference="alignment:Splign:2.1.0"
     CDS             171..716
                     /gene="TRAPPC3L"
                     /gene_synonym="bA259P20.2; BET3L"
                     /note="TRAPPC3-like protein; trafficking protein particle
                     complex 3 like; trafficking protein particle complex
                     subunit 3 like; BET3-like protein"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit
                     3-like protein"
                     /protein_id="NP_001132916.1"
                     /db_xref="CCDS:CCDS47468.1"
                     /db_xref="GeneID:100128327"
                     /db_xref="HGNC:HGNC:21090"
                     /db_xref="MIM:614137"
                     /translation="MSRPAHRRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQYL
                     DKMGYGIGTRLVEDFLARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNE
                     FSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDS
                     VTEIGITFLKKRDEKKYRGKK"
     exon            213..310
                     /gene="TRAPPC3L"
                     /gene_synonym="bA259P20.2; BET3L"
                     /inference="alignment:Splign:2.1.0"
     exon            311..410
                     /gene="TRAPPC3L"
                     /gene_synonym="bA259P20.2; BET3L"
                     /inference="alignment:Splign:2.1.0"
     exon            411..596
                     /gene="TRAPPC3L"
                     /gene_synonym="bA259P20.2; BET3L"
                     /inference="alignment:Splign:2.1.0"
     exon            597..2681
                     /gene="TRAPPC3L"
                     /gene_synonym="bA259P20.2; BET3L"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctcttcagc tcagcaaaga gcaaaagcag cagagtgcag aagcagcact cctgtctcaa
       61 agcgaggaag agcttacaaa aacaaaacaa aaagacatgg actgatacac ctctaagaaa
      121 caggcaaaag aagagaaatt gaagatcata ttcttcatct atcaagcact atgtctcgcc
      181 ctgcacaccg aagaccagaa taccataaaa taaataaaga tctctttgtc cttacctatg
      241 gagctctggt tgcccagctg tgtaaggatt atgagaagga tgaagatgtg aaccaatatt
      301 tagataaaat gggttacggc attggaacgc ggcttgtgga agactttttg gctcgatcct
      361 gcgtgggaag atgccatagt tattcagaaa ttatagacat aattgcccag gttgctttca
      421 agatgtacct gggaattaca ccaagtgtga cctgtaacaa ttcaagcaaa aatgaatttt
      481 ccctgattct agagaagaat cccctggtgg agtttgtgga agagctccct gctgggcgat
      541 cttctctgtg ctactgcaac ttgctctgtg ggattatcag aggtgccttg gaaatggttc
      601 atttggcggc tgatgttaca ttcttgcaag acagactaaa aggtgacagt gtgacagaaa
      661 taggaataac atttctaaaa aagcgagacg agaaaaaata tagagggaaa aaatgaagac
      721 tagcacggaa aatgccacgg ggcggctagc tgagttaatg ttagctaaac atgtatagac
      781 atagaaattt tgaattgctt catagcatga gctttgaaag gtttataaat cagccagaaa
      841 tttgaaatgc agggcatgaa ggcttaaagg tttttttttc cttttgctta taaatcacgc
      901 attttcaatc tcatgtccac aaaatttcat atgcaaatag ctccttacaa gatagcaggc
      961 aggaattcca catcttacac tatccatcct cagagaagct gttcattcca ttcacgtatg
     1021 gtaatgggaa aaaaaagcag cacaaataca aacagttgtg tatttgtctc tttgctgaaa
     1081 aaaaaagaat gaaatgatat agcatagagt ttcctatata tagacagtag tttctagata
     1141 ctgtatattg cattccttaa ataaataatt ccatatttct aaaaaaatat gatttgattt
     1201 ttctcatgta ttagcttggc ttatagcttt agccttctga cgctaccctt gatttgtaat
     1261 caccaagtca agctatttat tcaatgataa ttttgaaaca tttataaata acatttaatt
     1321 ttaatttatt tagttttaat atagctggca tcaaccaaat tccttccttt tctcatgaaa
     1381 tattgcttga tggtcaggcc aggaaacttc taaaataaag gataaataat attctttgaa
     1441 attactttct taccccaaag cttattaatt cagaatttct actatcattt tcatcctcta
     1501 aaaaatcttc caaaggatgt tttctttgtg accagaacac atttaaaatt caagtgtacc
     1561 gaattaaata cacagtaatc ttcaccagac cactggcaca caagggcggc ctacaaggca
     1621 gcccagaatc tactgggctc tgcagagagc ccaaattgca agtacaagtt ataattagtg
     1681 tgataccacc ctacggaatt ggagaaaata tttgtaaact atgtatctga cacccttgtg
     1741 ctattaataa ccagaatata taaggagttc aaccaactcc ataggaaaaa attaaaatta
     1801 ataatccaat taaagatggg caaaagatct gaatagacat ttctcaaaag aagacataca
     1861 catacaaatg gcaaacaggt atatgaaaag gtgctcaaca tcattggtca tcagagaaat
     1921 gcaaatcaaa actataatga gatattatct caccctagtt aaaaatggct tttatccaaa
     1981 acaggcaata gtgaatgctt gcaaagatgt ggagaagagg gaactctggt acactgttgg
     2041 tgggaatgta aattagtata accactatgg agaacggttt ggaggttcct caaaaaacaa
     2101 aaaatagaat gatcatatga tccagcaatc ccactgctgg atatataccc aaaataaagg
     2161 aaatcagtat atcaaagaga tatctgcact cccatgttta ctgcagaact actgacgata
     2221 gctaagattt ggaagaaatc taagtgtcct tcaatagatt aatgaaataa agaaaatatg
     2281 gtacatatac acaatggagt actattcagc cataaagaag aatgagatcc tgtcatttgc
     2341 aaaacatgga tggaactaga ggtcattatg ttcaatgaaa tatgtcagga cagaaagaca
     2401 gactttgcat gttctcattt atttgtagga gctaaaaatt aaaacagtgg actcatggag
     2461 atatggagta aaatgatgga tatcagaggc tgggaagggt agtttcaaga ggagtggaga
     2521 tggttaatgg gtacaaaaat atagttagat agaatgaata agatctgggt cgggcatggt
     2581 ggcacaagcc tgtaatctct gcactttggg atgccaaagt gggaggattg cttgagctca
     2641 ggagtttgag accagcttgg gtaacataga cccctgtctc t
//
