LOCUS       XM_047423331            6693 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens tenascin C (TNC), transcript variant X39,
            mRNA.
ACCESSION   XM_047423331
VERSION     XM_047423331.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000009.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6693
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
     gene            1..6693
                     /gene="TNC"
                     /gene_synonym="150-225; DFNA56; GMEM; GP; HXB; JI; TN;
                     TN-C"
                     /note="tenascin C; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 109 ESTs, 1055
                     long SRA reads, 1 Protein, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     19 samples with support for all annotated introns"
                     /db_xref="GeneID:3371"
                     /db_xref="HGNC:HGNC:5318"
                     /db_xref="MIM:187380"
     CDS             417..5111
                     /gene="TNC"
                     /gene_synonym="150-225; DFNA56; GMEM; GP; HXB; JI; TN;
                     TN-C"
                     /codon_start=1
                     /product="tenascin isoform X22"
                     /protein_id="XP_047279287.1"
                     /db_xref="GeneID:3371"
                     /db_xref="HGNC:HGNC:5318"
                     /db_xref="MIM:187380"
                     /translation="MGAMTQLLAGVFLAFLALATEGGVLKKVIRHKRQSGVNATLPEE
                     NQPVVFNHVYNIKLPVGSQCSVDLESASGEKDLAPPSEPSESFQEHTVDGENQIVFTH
                     RINIPRRACGCAAAPDVKELLSRLEELENLVSSLREQCTAGAGCCLQPATGRLDTRPF
                     CSGRGNFSTEGCGCVCEPGWKGPNCSEPECPGNCHLRGRCIDGQCICDDGFTGEDCSQ
                     LACPSDCNDQGKCVNGVCICFEGYAGADCSREICPVPCSEEHGTCVDGLCVCHDGFAG
                     DDCNKPLCLNNCYNRGRCVENECVCDEGFTGEDCSELICPNDCFDRGRCINGTCYCEE
                     GFTGEDCGKPTCPHACHTQGRCEEGQCVCDEGFAGVDCSEKRCPADCHNRGRCVDGRC
                     ECDDGFTGADCGELKCPNGCSGHGRCVNGQCVCDEGYTGEDCSQLRCPNDCHSRGRCV
                     EGKCVCEQGFKGYDCSDMSCPNDCHQHGRCVNGMCVCDDGYTGEDCRDRQCPRDCSNR
                     GLCVDGQCVCEDGFTGPDCAELSCPNDCHGQGRCVNGQCVCHEGFMGKDCKEQRCPSD
                     CHGQGRCVDGQCICHEGFTGLDCGQHSCPSDCNNLGQCVSGRCICNEGYSGEDCSEVS
                     PPKDLVVTEVTEETVNLAWDNEMRVTEYLVVYTPTHEGGLEMQFRVPGDQTSTIIQEL
                     EPGVEYFIRVFAILENKKSIPVSARVATYLPAPEGLKFKSIKETSVEVEWDPLDIAFE
                     TWEIIFRNMNKEDEGEITKSLRRPETSYRQTGLAPGQEYEISLHIVKNNTRGPGLKRV
                     TTTRLDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYGIKDVPGDRTTIDLTEDEN
                     QYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTTGLDAPRNLRRVSQTDNSITLEWR
                     NGKAAIDSYRIKYAPISGGDHAEVDVPKSQQATTKTTLTGLRPGTEYGIGVSAVKEDK
                     ESNPATINAATELDTPKDLQVSETAETSLTLLWKTPLAKFDRYRLNYSLPTGQWVGVQ
                     LPRNTTSYVLRGLEPGQEYNVLLTAEKGRHKSKPARVKASTAMGSPKEVIFSDITENS
                     ATVSWRAPTAQVESFRITYVPITGGTPSMVTVDGTKTQTRLVKLIPGVEYLVSIIAMK
                     GFEESEPVSGSFTTALDGPSGLVTANITDSEALARWQPAIATVDSYVISYTGEKVPEI
                     TRTVSGNTVEYALTDLEPATEYTLRIFAEKGPQKSSTITAKFTTDLDSPRDLTATEVQ
                     SETALLTWRPPRASVTGYLLVYESVDGTVKEVIVGPDTTSYSLADLSPSTHYTAKIQA
                     LNGPLRSNMIQTIFTTIGLLYPFPKDCSQAMLNGDTTSGLYTIYLNGDKAEALEVFCD
                     MTSDGGGWIVFLRRKNGRENFYQNWKAYAAGFGDRREEFWLGLDNLNKITAQGQYELR
                     VDLRDHGETAFAVYDKFSVGDAKTRYKLKVEGYSGTAGDSMAYHNGRSFSTFDKDTDS
                     AITNCALSYKGAFWYRNCHRVNLMGRYGDNNHSQGVNWFHWKGHEHSIQFAEMKLRPS
                     NFRNLEGRRKRA"
ORIGIN      
        1 ggccacagcc tgcctactgt cacccgcctc tcccgcgcgc agatacacgc ccccgcctcc
       61 gtgggcacaa aggcagcgct gctggggaac tcgggggaac gcgcacgtgg gaaccgccgc
      121 agctccacac tccaggtact tcttccaagg acctaggtct ctcgcccatc ggaaagattt
      181 ctatagacac ctagctgtgc tttcttacaa gaaaacatat ccactggacc aaagcgcagc
      241 ccccttcatg ctgaagccac ttcagtttga aacgtaaaaa aaaataattc tttcaagaag
      301 atcagggaca actgatttga agtctactct gtgcttctaa atccccaatt ctgctgaaag
      361 tgagataccc tagagcccta gagccccagc agcacccagc caaacccacc tccaccatgg
      421 gggccatgac tcagctgttg gcaggtgtct ttcttgcttt ccttgccctc gctaccgaag
      481 gtggggtcct caagaaagtc atccggcaca agcgacagag tggggtgaac gccaccctgc
      541 cagaagagaa ccagccagtg gtgtttaacc acgtttacaa catcaagctg ccagtgggat
      601 cccagtgttc ggtggatctg gagtcagcca gtggggagaa agacctggca ccgccttcag
      661 agcccagcga aagctttcag gagcacacag tggatgggga aaaccagatt gtcttcacac
      721 atcgcatcaa catcccccgc cgggcctgtg gctgtgccgc agcccctgat gttaaggagc
      781 tgctgagcag actggaggag ctggagaacc tggtgtcttc cctgagggag caatgtactg
      841 caggagcagg ctgctgtctc cagcctgcca caggccgctt ggacaccagg cccttctgta
      901 gcggtcgggg caacttcagc actgaaggat gtggctgtgt ctgcgaacct ggctggaaag
      961 gccccaactg ctctgagccc gaatgtccag gcaactgtca ccttcgaggc cggtgcattg
     1021 atgggcagtg catctgtgac gacggcttca cgggcgagga ctgcagccag ctggcttgcc
     1081 ccagcgactg caatgaccag ggcaagtgcg taaatggagt ctgcatctgt ttcgaaggct
     1141 acgccggggc tgactgcagc cgtgaaatct gcccagtgcc ctgcagtgag gagcacggca
     1201 catgtgtaga tggcttgtgt gtgtgccacg atggctttgc aggcgatgac tgcaacaagc
     1261 ctctgtgtct caacaattgc tacaaccgtg gacgatgcgt ggagaatgag tgcgtgtgtg
     1321 atgagggttt cacgggcgaa gactgcagtg agctcatctg ccccaatgac tgcttcgacc
     1381 ggggccgctg catcaatggc acctgctact gcgaagaagg cttcacaggt gaagactgcg
     1441 ggaaacccac ctgcccacat gcctgccaca cccagggccg gtgtgaggag gggcagtgtg
     1501 tatgtgatga gggctttgcc ggtgtggact gcagcgagaa gaggtgtcct gctgactgtc
     1561 acaatcgtgg ccgctgtgta gacgggcggt gtgagtgtga tgatggtttc actggagctg
     1621 actgtgggga gctcaagtgt cccaatggct gcagtggcca tggccgctgt gtcaatgggc
     1681 agtgtgtgtg tgatgagggc tatactgggg aggactgcag ccagctacgg tgccccaatg
     1741 actgtcacag tcggggccgc tgtgtcgagg gcaaatgtgt atgtgagcaa ggcttcaagg
     1801 gctatgactg cagtgacatg agctgcccta atgactgtca ccagcacggc cgctgtgtga
     1861 atggcatgtg tgtttgtgat gacggctaca caggggaaga ctgccgggat cgccaatgcc
     1921 ccagggactg cagcaacagg ggcctctgtg tggacggaca gtgcgtctgt gaggacggct
     1981 tcaccggccc tgactgtgca gaactctcct gtccaaatga ctgccatggc cagggtcgct
     2041 gtgtgaatgg gcagtgcgtg tgccatgaag gatttatggg caaagactgc aaggagcaaa
     2101 gatgtcccag tgactgtcat ggccagggcc gctgcgtgga cggccagtgc atctgccacg
     2161 agggcttcac aggcctggac tgtggccagc actcctgccc cagtgactgc aacaacttag
     2221 gacaatgcgt ctcgggccgc tgcatctgca acgagggcta cagcggagaa gactgctcag
     2281 aggtgtctcc tcccaaagac ctcgttgtga cagaagtgac ggaagagacg gtcaacctgg
     2341 cctgggacaa tgagatgcgg gtcacagagt accttgtcgt gtacacgccc acccacgagg
     2401 gtggtctgga aatgcagttc cgtgtgcctg gggaccagac gtccaccatc atccaggagc
     2461 tggagcctgg tgtggagtac tttatccgtg tatttgccat cctggagaac aagaagagca
     2521 ttcctgtcag cgccagggtg gccacgtact tacctgcacc tgaaggcctg aaattcaagt
     2581 ccatcaagga gacatctgtg gaagtggagt gggatcctct agacattgct tttgaaacct
     2641 gggagatcat cttccggaat atgaataaag aagatgaggg agagatcacc aaaagcctga
     2701 ggaggccaga gacctcttac cggcaaactg gtctagctcc tgggcaagag tatgagatat
     2761 ctctgcacat agtgaaaaac aatacccggg gccctggcct gaagagggtg accaccacac
     2821 gcttggatgc ccccagccag atcgaggtga aagatgtcac agacaccact gccttgatca
     2881 cctggttcaa gcccctggct gagatcgatg gcattgagct gacctacggc atcaaagacg
     2941 tgccaggaga ccgtaccacc atcgatctca cagaggacga gaaccagtac tccatcggga
     3001 acctgaagcc tgacactgag tacgaggtgt ccctcatctc ccgcagaggt gacatgtcaa
     3061 gcaacccagc caaagagacc ttcacaacag gcctcgatgc tcccaggaat cttcgacgtg
     3121 tttcccagac agataacagc atcaccctgg aatggaggaa tggcaaggca gctattgaca
     3181 gttacagaat taagtatgcc cccatctctg gaggggacca cgctgaggtt gatgttccaa
     3241 agagccaaca agccacaacc aaaaccacac tcacaggtct gaggccggga actgaatatg
     3301 ggattggagt ttctgctgtg aaggaagaca aggagagcaa tccagcgacc atcaacgcag
     3361 ccacagagtt ggacacgccc aaggaccttc aggtttctga aactgcagag accagcctga
     3421 ccctgctctg gaagacaccg ttggccaaat ttgaccgcta ccgcctcaat tacagtctcc
     3481 ccacaggcca gtgggtggga gtgcagcttc caagaaacac cacttcctat gtcctgagag
     3541 gcctggaacc aggacaggag tacaatgtcc tcctgacagc cgagaaaggc agacacaaga
     3601 gcaagcccgc acgtgtgaag gcatccactg ccatgggctc cccaaaggaa gtcattttct
     3661 cagacatcac tgaaaattcg gctactgtca gctggagggc acccacagcc caagtggaga
     3721 gcttccggat tacctatgtg cccattacag gaggtacacc ctccatggta actgtggacg
     3781 gaaccaagac tcagaccagg ctggtgaaac tcatacctgg cgtggagtac cttgtcagca
     3841 tcatcgccat gaagggcttt gaggaaagtg aacctgtctc agggtcattc accacagctc
     3901 tggatggccc atctggcctg gtgacagcca acatcactga ctcagaagcc ttggccaggt
     3961 ggcagccagc cattgccact gtggacagtt atgtcatctc ctacacaggc gagaaagtgc
     4021 cagaaattac acgcacggtg tccgggaaca cagtggagta tgctctgacc gacctcgagc
     4081 ctgccacgga atacacactg agaatctttg cagagaaagg gccccagaag agctcaacca
     4141 tcactgccaa gttcacaaca gacctcgatt ctccaagaga cttgactgct actgaggttc
     4201 agtcggaaac tgccctcctt acctggcgac ccccccgggc atcagtcacc ggttacctgc
     4261 tggtctatga atcagtggat ggcacagtca aggaagtcat tgtgggtcca gataccacct
     4321 cctacagcct ggcagacctg agcccatcca cccactacac agccaagatc caggcactca
     4381 atgggcccct gaggagcaat atgatccaga ccatcttcac cacaattgga ctcctgtacc
     4441 ccttccccaa ggactgctcc caagcaatgc tgaatggaga cacgacctct ggcctctaca
     4501 ccatttatct gaatggtgat aaggctgagg cgctggaagt cttctgtgac atgacctctg
     4561 atgggggtgg atggattgtg ttcctgagac gcaaaaacgg acgcgagaac ttctaccaaa
     4621 actggaaggc atatgctgct ggatttgggg accgcagaga agaattctgg cttgggctgg
     4681 acaacctgaa caaaatcaca gcccaggggc agtacgagct ccgggtggac ctgcgggacc
     4741 atggggagac agcctttgct gtctatgaca agttcagcgt gggagatgcc aagactcgct
     4801 acaagctgaa ggtggagggg tacagtggga cagcaggtga ctccatggcc taccacaatg
     4861 gcagatcctt ctccaccttt gacaaggaca cagattcagc catcaccaac tgtgctctgt
     4921 cctacaaagg ggctttctgg tacaggaact gtcaccgtgt caacctgatg gggagatatg
     4981 gggacaataa ccacagtcag ggcgttaact ggttccactg gaagggccac gaacactcaa
     5041 tccagtttgc tgagatgaag ctgagaccaa gcaacttcag aaatcttgaa ggcaggcgca
     5101 aacgggcata aattccaggg accactgggt gagagaggaa taaggcccag agcgaggaaa
     5161 ggattttacc aaagcatcaa tacaaccagc ccaaccatcg gtccacacct gggcatttgg
     5221 tgagagtcaa agctgaccat ggatccctgg ggccaacggc aacagcatgg gcctcacctc
     5281 ctctgtgatt tctttctttg caccaaagac atcagtctcc aacatgtttc tgttttgttg
     5341 tttgattcag caaaaatctc ccagtgacaa catcgcaata gttttttact tctcttaggt
     5401 ggctctggga atgggagagg ggtaggatgt acaggggtag tttgttttag aaccagccgt
     5461 attttacatg aagctgtata attaattgtc attatttttg ttagcaaaga ttaaatgtgt
     5521 cattggaagc catccctttt tttacatttc atacaacaga aaccagaaaa gcaatactgt
     5581 ttccatttta aggatatgat taatattatt aatataataa tgatgatgat gatgatgaaa
     5641 actaaggatt tttcaagaga tctttctttc caaaacattt ctggacagta cctgattgta
     5701 tttttttttt aaataaaagc acaagtactt ttgagtttgt tattttgctt tgaattgttg
     5761 agtctgaatt tcaccaaagc caatcatttg aacaaagcgg ggaatgttgg gataggaaag
     5821 gtaagtaggg atagtggtca agtgggaggg gtggaaagga gactaaagac tgggagagag
     5881 ggaagcactt tttttaaata aagttgaaca cacttgggaa aagcttacag gccaggcctg
     5941 taatcccaac actttgggag gccaaggtgg gaggatagct taaccccagg agtttgagac
     6001 cagcctgagc aacatagtga gaacttgtct ctacagaaaa aaaaaaaaaa aaaaatttaa
     6061 ttaggcaagc gtggtagtgc gcacctgtcg tcccagctac tcaggaggct gaggtaggaa
     6121 aatcactgga gcccaggagt tagaggttac agtgagctat gatcacacta ctgcactcca
     6181 gcctgggcaa cagagggaga ccctgtctct aaataaaaaa agaaaagaaa aaaaaagctt
     6241 acaacttgag attcagcatc ttgctcagta tttccaagac taatagatta tggtttaaaa
     6301 gatgctttta tactcatttt ctaatgcaac tcctagaaac tctatgatat agttgaggta
     6361 agtattgtta ccacacatgg gctaagatcc ccagaggcag actgcctgag ttcaattctt
     6421 ggctccacca ttcccaagtt ccctaacctc tctatgcctc agtttcctct tctgtaaagt
     6481 agggacactc atacttctca tttcagaaca tttttgtgaa gaataaatta tgttatccat
     6541 ttgaggccct tagaatggta cccggtgtat attaagtgct agtacatgtt agctatcatc
     6601 attatcactt tatatgagat ggactggggt tcatagaaac ccaatgactt gattgtggct
     6661 actactcaat aaataataga atttggattt aaa
//
