LOCUS       NM_001199233             834 bp    mRNA    linear   PRI 05-OCT-2024
DEFINITION  Homo sapiens testis expressed 48 (TEX48), transcript variant 1,
            mRNA.
ACCESSION   NM_001199233 XM_001715082 XM_001717108 XM_001718491 XM_003118615
            XM_003118616 XM_003120101 XM_003120102 XM_003120643 XM_003120644
VERSION     NM_001199233.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
            Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
            Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
            Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
            Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
            Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
            Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
            Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
            Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
            Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
            Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
            Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
            Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
            Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
            Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
            Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
            Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
  TITLE     A reference map of the human binary protein interactome
  JOURNAL   Nature 580 (7803), 402-408 (2020)
   PUBMED   32296183
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL160275.14.
            
            On Jul 25, 2019 this sequence version replaced NM_001199233.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DB452574.1, SRR5189667.278227.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA1968540,
                                           SAMEA1968968 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000436752.3/ ENSP00000490263.1
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-158               AL160275.14        156351-156508       c
            159-266             AL160275.14        146036-146143       c
            267-389             AL160275.14        145699-145821       c
            390-521             AL160275.14        142522-142653       c
            522-834             AL160275.14        140750-141062       c
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9q32"
     gene            1..834
                     /gene="TEX48"
                     /note="testis expressed 48"
                     /db_xref="GeneID:100505478"
                     /db_xref="HGNC:HGNC:52393"
     exon            1..158
                     /gene="TEX48"
                     /inference="alignment:Splign:2.1.0"
     exon            159..266
                     /gene="TEX48"
                     /inference="alignment:Splign:2.1.0"
     CDS             263..625
                     /gene="TEX48"
                     /note="isoform 1 is encoded by transcript variant 1;
                     testis-expressed protein 48"
                     /codon_start=1
                     /product="testis-expressed protein 48 isoform 1"
                     /protein_id="NP_001186162.1"
                     /db_xref="CCDS:CCDS83406.1"
                     /db_xref="GeneID:100505478"
                     /db_xref="HGNC:HGNC:52393"
                     /translation="MAAHQNLILKIFCLCCRDCQEPYAINDSKVPSQTQEHKPSTQNL
                     LLQKDELDRQNPKRINAVSHLPSRTPLIQTKKSTSSSSSEFEDLNAYASQRNFYKRNL
                     NRYCQEHWPFQPCLTGRP"
     exon            267..389
                     /gene="TEX48"
                     /inference="alignment:Splign:2.1.0"
     exon            390..521
                     /gene="TEX48"
                     /inference="alignment:Splign:2.1.0"
     exon            522..834
                     /gene="TEX48"
                     /inference="alignment:Splign:2.1.0"
     regulatory      811..816
                     /regulatory_class="polyA_signal_sequence"
                     /gene="TEX48"
                     /note="hexamer: ATTAAA"
     polyA_site      834
                     /gene="TEX48"
                     /note="major polyA site"
ORIGIN      
        1 agtatacagt ctggtggcca gcatggcatc gtgctcagca gaacttctcc ctcctcctcg
       61 ctgttgtggt ccagtccaaa catcccagcc ccaacattcc ctggttcccc agctctgtga
      121 catcacagac agccttctgt ctactctgcc agctgcagga aacagcccag cccagtgaac
      181 tgggctcaaa ctcaagactg gctgattcaa caaggcaccc ctgcagacaa agctggcaga
      241 gtagaagttt caactccttt ccatggcagc ccaccaaaac ctgatcttga agatcttctg
      301 tttatgctgc agggactgtc aggagcccta tgccatcaat gactccaagg ttcccagtca
      361 aacccaggag cacaagccat cgacccaaaa tttgctgctt cagaaggatg agcttgacag
      421 acaaaatccc aagcgcatta acgcagtctc ccatttgcct tcgagaacac ccctgatcca
      481 gacaaaaaag agcacttcct ccagcagcag tgagtttgag gatctgaatg catatgcttc
      541 ccaaagaaat ttttacaaga gaaacttaaa ccgctactgc caggagcact ggccattcca
      601 gccatgcctc actgggaggc cctgagcatt ctagccggcg gctgcacagc tgctggggca
      661 tctccatgag gaagagggcg gtggacagga gtcatgaaga ctaattcgga aactcccctg
      721 aaggaggaga agacatctga gccatccttg tgccaccaag caagagtcac tccagctcct
      781 aaaaagccac catgggaaga gctgcctcca attaaagttc ttgattgcac caga
//
