LOCUS       NM_001145474             840 bp    mRNA    linear   PRI 14-MAR-2025
DEFINITION  Homo sapiens testis expressed 38 (TEX38), transcript variant 1,
            mRNA.
ACCESSION   NM_001145474 XM_001717622 XM_371248 XM_941516
VERSION     NM_001145474.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Orvedahl,A., Sumpter,R. Jr., Xiao,G., Ng,A., Zou,Z., Tang,Y.,
            Narimatsu,M., Gilpin,C., Sun,Q., Roth,M., Forst,C.V., Wrana,J.L.,
            Zhang,Y.E., Luby-Phelps,K., Xavier,R.J., Xie,Y. and Levine,B.
  TITLE     Image-based genome-wide siRNA screen identifies selective autophagy
            factors
  JOURNAL   Nature 480 (7375), 113-117 (2011)
   PUBMED   22020285
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC067853.1, BC126318.1 and AI828862.1.
            
            On May 17, 2019 this sequence version replaced NM_001145474.3.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189667.65471.1,
                                           SRR5189667.401752.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000334122.5/ ENSP00000455854.1
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-392               BC067853.1         27-418
            393-740             BC126318.1         369-716
            741-798             BC067853.1         767-824
            799-840             AI828862.1         14-55               c
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
                     /map="1p33"
     gene            1..840
                     /gene="TEX38"
                     /gene_synonym="ATPAF1-AS1; C1orf223; THEG4"
                     /note="testis expressed 38"
                     /db_xref="GeneID:374973"
                     /db_xref="HGNC:HGNC:29589"
                     /db_xref="MIM:621126"
     exon            1..118
                     /gene="TEX38"
                     /gene_synonym="ATPAF1-AS1; C1orf223; THEG4"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..702
                     /gene="TEX38"
                     /gene_synonym="ATPAF1-AS1; C1orf223; THEG4"
                     /note="isoform 1 is encoded by transcript variant 1;
                     testis highly expressed protein 4; ATPAF1 antisense gene
                     protein 1; testis-expressed sequence 38 protein;
                     testis-expressed protein 38; ATPAF1 antisense RNA 1"
                     /codon_start=1
                     /product="testis-expressed protein 38 isoform 1"
                     /protein_id="NP_001138946.1"
                     /db_xref="CCDS:CCDS57999.1"
                     /db_xref="GeneID:374973"
                     /db_xref="HGNC:HGNC:29589"
                     /db_xref="MIM:621126"
                     /translation="MDSQQEDLRFPGMWVSLYFGILGLCSVITGGCIIFLHWRKNLRR
                     EEHAQQWVEVMRAATFTYSPLLYWINKRRRYGMNAAINTGPAPAVTKTETEVQNPDVL
                     WDLDIPEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLC
                     NLPPLLNHSVSYPLATCPERNVLFHSLLNLAQEDHSFNAKPFPSEL"
     exon            119..840
                     /gene="TEX38"
                     /gene_synonym="ATPAF1-AS1; C1orf223; THEG4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatgggctg actggctggg cagatgggtg ggtgagttcc ctctccccag agccatcggc
       61 caggtaccaa agctcagctg tatggattcc caacaggagg acctgcgctt ccctgggatg
      121 tgggtctcat tgtactttgg aatcctgggg ctgtgttctg tgataactgg agggtgcatt
      181 atctttctgc actggaggaa gaacttgagg cgggaagagc atgcccagca gtgggtggag
      241 gtgatgagag ctgccacatt cacctacagc ccattgttgt actggattaa caagcgacgg
      301 cgctacggca tgaatgcagc catcaacacg ggccctgccc ctgctgtcac caagactgag
      361 actgaggtcc agaatccaga tgttctgtgg gatttggaca tccccgaagg caggagccat
      421 gctgaccaag acagcaaccc caaggcggaa gcccctgctc ccctgcaacc tgcactgcag
      481 ctggctccac agcagcccca ggccagatcc ccattcccac ttcccatctt tcaggaggtg
      541 ccctttgccc cacccttgtg caacctaccc cccctgctga accactctgt ctcctatcct
      601 ttggccacct gtcctgaaag gaatgttctc ttccattccc tcctgaatct ggcccaggaa
      661 gaccatagct tcaatgccaa gccttttcct tcagaactgt agcctcctct cactgaaggt
      721 gggagctgca ggaatcaggt gcagagtagg aaatggaact aacctcagga aggtggtatt
      781 gacagaggtc aggacccacc tggatgtcat gctatgaaac attaaaagaa aaaaaaaaaa
//
