LOCUS       NM_138779               1362 bp    mRNA    linear   PRI 04-APR-2024
DEFINITION  Homo sapiens testis expressed 30 (TEX30), transcript variant 1,
            mRNA.
ACCESSION   NM_138779
VERSION     NM_138779.5
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1362)
  AUTHORS   Dunham,A., Matthews,L.H., Burton,J., Ashurst,J.L., Howe,K.L.,
            Ashcroft,K.J., Beare,D.M., Burford,D.C., Hunt,S.E.,
            Griffiths-Jones,S., Jones,M.C., Keenan,S.J., Oliver,K., Scott,C.E.,
            Ainscough,R., Almeida,J.P., Ambrose,K.D., Andrews,D.T.,
            Ashwell,R.I., Babbage,A.K., Bagguley,C.L., Bailey,J., Bannerjee,R.,
            Barlow,K.F., Bates,K., Beasley,H., Bird,C.P., Bray-Allen,S.,
            Brown,A.J., Brown,J.Y., Burrill,W., Carder,C., Carter,N.P.,
            Chapman,J.C., Clamp,M.E., Clark,S.Y., Clarke,G., Clee,C.M.,
            Clegg,S.C., Cobley,V., Collins,J.E., Corby,N., Coville,G.J.,
            Deloukas,P., Dhami,P., Dunham,I., Dunn,M., Earthrowl,M.E.,
            Ellington,A.G., Faulkner,L., Frankish,A.G., Frankland,J.,
            French,L., Garner,P., Garnett,J., Gilbert,J.G., Gilson,C.J.,
            Ghori,J., Grafham,D.V., Gribble,S.M., Griffiths,C., Hall,R.E.,
            Hammond,S., Harley,J.L., Hart,E.A., Heath,P.D., Howden,P.J.,
            Huckle,E.J., Hunt,P.J., Hunt,A.R., Johnson,C., Johnson,D., Kay,M.,
            Kimberley,A.M., King,A., Laird,G.K., Langford,C.J., Lawlor,S.,
            Leongamornlert,D.A., Lloyd,D.M., Lloyd,C., Loveland,J.E.,
            Lovell,J., Martin,S., Mashreghi-Mohammadi,M., McLaren,S.J.,
            McMurray,A., Milne,S., Moore,M.J., Nickerson,T., Palmer,S.A.,
            Pearce,A.V., Peck,A.I., Pelan,S., Phillimore,B., Porter,K.M.,
            Rice,C.M., Searle,S., Sehra,H.K., Shownkeen,R., Skuce,C.D.,
            Smith,M., Steward,C.A., Sycamore,N., Tester,J., Thomas,D.W.,
            Tracey,A., Tromans,A., Tubby,B., Wall,M., Wallis,J.M., West,A.P.,
            Whitehead,S.L., Willey,D.L., Wilming,L., Wray,P.W., Wright,M.W.,
            Young,L., Coulson,A., Durbin,R., Hubbard,T., Sulston,J.E., Beck,S.,
            Bentley,D.R., Rogers,J. and Ross,M.T.
  TITLE     The DNA sequence and analysis of human chromosome 13
  JOURNAL   Nature 428 (6982), 522-528 (2004)
   PUBMED   15057823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC015148.2 and HY229390.1.
            
            On Nov 22, 2018 this sequence version replaced NM_138779.4.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1163658.251717.1,
                                           SRR5189658.222604.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA1965299,
                                           SAMEA1966682 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000376032.9/ ENSP00000365200.4
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1134              BC015148.2         7-1140
            1135-1362           HY229390.1         31-258              c
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="13"
                     /map="13q33.1"
     gene            1..1362
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /note="testis expressed 30"
                     /db_xref="GeneID:93081"
                     /db_xref="HGNC:HGNC:25188"
     exon            1..105
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /inference="alignment:Splign:2.1.0"
     exon            106..180
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /inference="alignment:Splign:2.1.0"
     CDS             166..849
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /note="isoform 1 is encoded by transcript variant 1;
                     testis-expressed sequence 30 protein; testis-expressed
                     protein 30"
                     /codon_start=1
                     /product="testis-expressed protein 30 isoform 1"
                     /protein_id="NP_620134.3"
                     /db_xref="CCDS:CCDS9503.2"
                     /db_xref="GeneID:93081"
                     /db_xref="HGNC:HGNC:25188"
                     /translation="MSHTEVKLKIPFGNKLLDAVCLVPNKSLTYGIILTHGASGDMNL
                     PHLMSLASHLASHGFFCLRFTCKGLNIVHRIKAYKSVLNYLKTSGEYKLAGVFLGGRS
                     MGSRAAASVMCHIEPDDGDDFVRGLICISYPLHHPKQQHKLRDEDLFRLKEPVLFVSG
                     SADEMCEKNLLEKVAQKMQAPHKIHWIEKANHSMAVKGRSTNDVFKEINTQILFWIQE
                     ITEMDKKCH"
     exon            181..411
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /inference="alignment:Splign:2.1.0"
     exon            412..463
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /inference="alignment:Splign:2.1.0"
     exon            464..669
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /inference="alignment:Splign:2.1.0"
     exon            670..1362
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1113..1118
                     /regulatory_class="polyA_signal_sequence"
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /note="hexamer: ATTAAA"
     polyA_site      1140
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /note="major polyA site"
     regulatory      1343..1348
                     /regulatory_class="polyA_signal_sequence"
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
                     /note="hexamer: AATAAA"
     polyA_site      1362
                     /gene="TEX30"
                     /gene_synonym="C13orf27"
ORIGIN      
        1 gaacgctgtg gcggggcagg cgaggcggtc gcttcgagcg cgctagtcag ctccctgaag
       61 ggagtgacgg cggttgggtg cccgcggcca cttttgcctt cccggggaga tgtcctttgc
      121 ttctcagatg taaatgcact ttaagtttgt tattcaacag tgaaaatgag tcatacagag
      181 gttaaattaa aaataccttt tggaaataaa ttactagatg ctgtttgttt ggtacctaac
      241 aagagcttaa catatggaat aattcttaca catggagcat caggagatat gaatcttcct
      301 catttgatgt cactggcatc ccatcttgca tctcatgggt ttttctgcct gagatttacc
      361 tgtaaaggcc ttaatattgt acatagaatt aaggcgtata aatcagtttt gaattacctg
      421 aagacatcag gagaatacaa acttgcaggt gtttttcttg gaggtcgttc aatgggctca
      481 agagcagctg cttctgtaat gtgtcacatt gagccagatg atggtgatga ttttgttcgg
      541 ggtctcattt gtatttctta cccactgcac catccaaagc agcagcataa actcagagat
      601 gaagacctct ttcgtttaaa agagcctgta ctgtttgtgt caggctcagc agatgaaatg
      661 tgtgaaaaga acttgttgga gaaagtggca cagaaaatgc aagctcccca taaaatccac
      721 tggattgaga aggcaaatca ttccatggca gtgaaaggac ggtcgacaaa tgatgttttc
      781 aaagaaataa atacacagat tttgttttgg atccaagaaa ttactgaaat ggacaagaaa
      841 tgtcattagt taaaagccat gttatcttga gtacacatac agttaatttg ataaagaaga
      901 gtatgcctct cagcattgtg agatatattt cagactaatt tgatgttctt taatgttccc
      961 ttatttttga aacacgtttt aaatgtgaaa ttaatgtcct tcacaaaatg tcttttgaaa
     1021 gcactgttac agttgtataa agatgatgta aaaatattga aggtggtcta catataattt
     1081 attttcatta gtatagttaa gttttgaaaa aaattaaaca tctgaatttt gttacaaaaa
     1141 ggtgcttttg tcttattgat aggcaactga gaaattttgc agagcagcgt tatcttcaga
     1201 aaaggaaaac attatggtta atctagtcag agatttatag aatgcacaca tctcttcacc
     1261 ttatctttta ataaatcaca atgaaaggat aggagtggac atatgtttca aatatgggga
     1321 ccctgaagat tttttagaat gaaataaaga tctttaattc aa
//
