LOCUS       NM_001039397            3224 bp    mRNA    linear   PRI 08-APR-2024
DEFINITION  Homo sapiens TBC1 domain family member 28 (TBC1D28), mRNA.
ACCESSION   NM_001039397 XM_170842 XM_930346
VERSION     NM_001039397.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3224)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC026271.6.
            
            On Jul 22, 2021 this sequence version replaced NM_001039397.2.
            
            ##Evidence-Data-START##
            CDS exon combination :: BC112016.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMEA2158188 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000405044.7/ ENSP00000385821.1
            RefSeq Select criteria :: based on manual assertion, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               AC026271.6         74961-75062
            103-273             AC026271.6         77354-77524
            274-375             AC026271.6         77619-77720
            376-451             AC026271.6         77999-78074
            452-534             AC026271.6         78248-78330
            535-574             AC026271.6         80138-80177
            575-655             AC026271.6         80651-80731
            656-763             AC026271.6         80932-81039
            764-873             AC026271.6         81379-81488
            874-3224            AC026271.6         82755-85105
FEATURES             Location/Qualifiers
     source          1..3224
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="17"
                     /map="17p11.2"
     gene            1..3224
                     /gene="TBC1D28"
                     /note="TBC1 domain family member 28"
                     /db_xref="GeneID:254272"
                     /db_xref="HGNC:HGNC:26858"
     exon            1..102
                     /gene="TBC1D28"
                     /inference="alignment:Splign:2.1.0"
     exon            103..273
                     /gene="TBC1D28"
                     /inference="alignment:Splign:2.1.0"
     exon            274..375
                     /gene="TBC1D28"
                     /inference="alignment:Splign:2.1.0"
     exon            376..451
                     /gene="TBC1D28"
                     /inference="alignment:Splign:2.1.0"
     CDS             377..1009
                     /gene="TBC1D28"
                     /codon_start=1
                     /product="TBC1 domain family member 28"
                     /protein_id="NP_001034486.2"
                     /db_xref="CCDS:CCDS42273.1"
                     /db_xref="GeneID:254272"
                     /db_xref="HGNC:HGNC:26858"
                     /translation="MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRK
                     YTNNLGIVHEMELPRVSALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVI
                     PLAVRGRALSLLLDIDKIKSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFI
                     QRFGVKQQELCDILVAYSAYNPVSIPGQRYSWYLCPYSQAWVSLGGVATS"
     exon            452..534
                     /gene="TBC1D28"
                     /inference="alignment:Splign:2.1.0"
     exon            535..574
                     /gene="TBC1D28"
                     /inference="alignment:Splign:2.1.0"
     exon            575..655
                     /gene="TBC1D28"
                     /inference="alignment:Splign:2.1.0"
     exon            656..763
                     /gene="TBC1D28"
                     /inference="alignment:Splign:2.1.0"
     exon            764..873
                     /gene="TBC1D28"
                     /inference="alignment:Splign:2.1.0"
     exon            874..3224
                     /gene="TBC1D28"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3205..3210
                     /regulatory_class="polyA_signal_sequence"
                     /gene="TBC1D28"
                     /note="hexamer: AATAAA"
     polyA_site      3224
                     /gene="TBC1D28"
                     /note="major polyA site"
ORIGIN      
        1 gtctctatgt ctggagctct tagagataag acatagaggt gtctggttct gagaaaagga
       61 agttttgcta agtgagagac acaactgact caactgactc aggaaaacaa agtcccctcc
      121 tgtattgaca gctgggaatt gtggtgtcca ccgtcctcga cctgcgacgg ggtctccatg
      181 agcacagagg ctgctctgga gtcaacagat catcttttcc ccaaaccaaa ctgcttggct
      241 ggcgttgttc ctgaaggggc ttcactggcc agaagacatc cagtccctga ctccacctgc
      301 ctccaggtgc ccagaacagc ccatcgtggg gacttcaccc tcagcaagtg gacgccgttt
      361 gtcctgccag ggcaggatgg agatggatga ggacccggat aacctgcctg cccaggggca
      421 aggcaatatc atcattacta agtatgagca gggacaccga gctggggcag cagtggactt
      481 ggggcatgag caggttgatg tcagaaaata caccaataac ctcgggattg tgcatgagat
      541 ggagctgccc cgcgtcagtg ccctggaggt gaagcaaaga cgcaaggaaa gtaaacgtac
      601 caacaagtgg caaaagatgc ttgcagactg gacaaaatat aggagcacca agaagctgtc
      661 tcaaagagta tgcaaagtca ttcccctggc ggtgcggggc cgggcgttgt cacttttgct
      721 agatattgac aaaatcaagt cccagaaccc aggcaaatat aaggtcatga aggagaaggg
      781 caagaggtcc tccagaatca tccactgcat ccagctagat gtcagccaca ccctgcagaa
      841 acacatgatg ttcatacaaa gattcggagt caagcagcag gaattatgtg acatcctcgt
      901 ggcctattct gcatataacc ctgtgagtat tcccgggcag cgatattcct ggtacctgtg
      961 cccatattca caggcatggg tgtctctcgg gggtgttgca acttcttgaa aattcagcgt
     1021 ttgtccacca ggacgtagta ggcaggactt cagctcgctg ctggcagaaa agggttgaag
     1081 cccagactcc tggtctcaca tggacccaat caccacatct cagatgaaga aatgaccttc
     1141 ccctcctggt gttgccccaa agcctaggag cttggcaggg tcccacacag gatggtcctt
     1201 gtaggagaca ggtttgacaa gttgctgagg tgcctgatgg gccaggcact tgtcatgaaa
     1261 tgagtttgca tcctggggga gcctcttctt cactggaaac ctggcaagga tccaatttcc
     1321 cctttgcctg atccccacag gagcatagca gatagggagg ggggtcaccc aggtggctct
     1381 tcctgcttgg cccccacttt ccagaccatt ccaggcaggg agagctgctg agctgactgc
     1441 atgagctgcc cacatggagg acccagccac cccttatgtt cggcaggcag cccttgggct
     1501 gttgcaggac cgtggccagt tcttggtatt gctcaagtcc cctgggcctt cagactggcg
     1561 ggtgacttca agggagcaac catcctgggc ctctcctggg acaaacactt gccttcaccc
     1621 actatcgatg tcttgctcag ccctcagagg agcgtggttg gcgtggatta cttcatgcct
     1681 tgattctgcc ttcccggaaa ccacggtggc agcaggcttg gatgtcacca agtcaccgtg
     1741 tttcatgcta tttctggagg ttctcgcctt tgtggcctcg gaaaggaagg cgatctggtg
     1801 ctttggggaa agccctcggg atgctcctcc agatggtctt cttcaggcct tttgctcagc
     1861 attggtctga tcagttctgc cagctctggg ccatgatctc ttggcactgg cgcggctttc
     1921 cttcaataat tccataaact ccagacttcg tgtcttttgc atggaaagca cgcggtgccc
     1981 atttcatcga caccgcaccc cggagtccaa acgtcagccc tgcgggtgtt gggtttgtta
     2041 gggacaattt cgggctcagg tgcagggggc gcttccccag cgcgggcgct tcctgggccc
     2101 catctgaggc cgtgggctcc tggcaggagg acctggagtt ttcagatccc cgggaaggat
     2161 gcatttcccc cactctcggg cacaagctgc cctttgctgg cgttgggcac ggatcatggc
     2221 ctcgcagaag cccgcgacag cgtggagcag gtggtgcccc cgcccgggac tcctggtggg
     2281 tgatggctcc gggaggcctt ggctgggaca gagtggggcc tccgggtcgg tcagcggccc
     2341 gagcccggct gcggctctcg gaggcttggg tttggaagac accgcctgcc atcccgcggc
     2401 gcctctcggg gtccgctccc ccggactggc cctgcccacc gcgcgcgagt agtagcgggc
     2461 ggccaggagt cagtggcagg cgcggccggt gggatgccgg gtaggaggct gcgctggagc
     2521 ccgctgggca gcgccgaccc ctaaggcagc cgggcgggtg agcgagcaga ggcgtgggcg
     2581 gctgaggggc tgaggggctg aggcggctga ggcggctgag gggctgagga ggctgagggg
     2641 ctgaggggct gaggcggctg aggggctgag gggctgaggg gcgggcagcc tggccggtcc
     2701 ctgccgcagg gtccaccgca cgtcacgtgg ccgaatccct cgggctgctt tctctctggg
     2761 ctgttttctt actgtgaacc tcgtgggctc ctgctcggtg tcctttctta ctctgtctct
     2821 gtttttgcat tctattggca agtattttat ttaggatatt ttactgatat aactgaggat
     2881 gaactgtgtt ttgcagcatt ttgttttatt acgcgttttc tcctagattt tggtatcatt
     2941 tttatgctga cttgattaaa cattttggaa actttcctgg aactgatagc ttttatatga
     3001 tctttttctt gaggtaataa aataatttac tttgaaatgt ctcagcctaa caacttttgt
     3061 gcttttgttg ttttgtgcag aggtgggaag actcctttgc atttttggta tcacttctgt
     3121 gttaatgatt ttgttgtttg tttcgcaaaa tcacttagtg atccgtgttt tccaacttaa
     3181 gagttaacat gtaccatttt gtgaaataaa aaaagtctcg tata
//
