LOCUS       XM_047427711            3362 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens synoviolin 1 (SYVN1), transcript variant
            X1, mRNA.
ACCESSION   XM_047427711
VERSION     XM_047427711.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000011.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3362
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
     gene            1..3362
                     /gene="SYVN1"
                     /gene_synonym="DER3; HRD1"
                     /note="synoviolin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 46 ESTs, 598
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 30 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:84447"
                     /db_xref="HGNC:HGNC:20738"
                     /db_xref="MIM:608046"
     CDS             284..2296
                     /gene="SYVN1"
                     /gene_synonym="DER3; HRD1"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase synoviolin isoform
                     X1"
                     /protein_id="XP_047283667.1"
                     /db_xref="GeneID:84447"
                     /db_xref="HGNC:HGNC:20738"
                     /db_xref="MIM:608046"
                     /translation="MFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMA
                     VLYIQAFVLVFLLGKVMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPR
                     FVALFTLLLFLKCFHWLAEDRVDFMERSPNISWLFHCRIVSLMFLLGILDFLFVSHAY
                     HSILTRGASVQLVFGFEYAILMTMVLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELF
                     TGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLY
                     PDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVL
                     RASLPAQSPPPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFP
                     PVPPPPSSGEAVAPPSTSAAALSRPSGAATTTAAGTSATAASATASGPGSGSAPEAGP
                     APGFPFPPPWMGMPLPPPFAFPPMPVPPAGFAGLTPEELRALEGHERQHLEARLQSLR
                     NIHTLLDAAMLQINQYLTVLASLGHWGHKGTSFYTLFCKAHQGQENLPNLGCQGQARL
                     SSLLFPGPPGLPLQSTPLRRLPLQLLLLPPPPASLAQRPRPQPQEPPHQPLKWKGLQL
                     LSQWAQRRCLRMESPMQQSSAGAACRSWSLLLPTDTAPAQPQPLLF"
ORIGIN      
        1 gttgttaacc ggaggggcag ccgcagtcgc gcggattgag cgggctcgcg gcgctgggtt
       61 cctggtgagt ggggcgaagt ctggcccgag ttgtggttgg ggtcgggacc cgaaccttcc
      121 ccttgaggtc tccggagtcg gcacgcccct cagccccgcc gcacgctttc ggcctgtcag
      181 ctggccggag acctcagacg ccggtgcggc cgctttgctc aagcctgggc cctgcctgcg
      241 acgcccgcaa ctcctggtgc tcacaggtct ccgggccagg gcaatgttcc gcacggcagt
      301 gatgatggcg gccagcctgg cgctgaccgg ggctgtggtg gctcacgcct actacctcaa
      361 acaccagttc taccccactg tggtgtacct gaccaagtcc agccccagca tggcagtcct
      421 gtacatccag gcctttgtcc ttgtcttcct tctgggcaag gtgatgggca aggtgttctt
      481 tgggcaactg agggcagcag agatggagca ccttctggaa cgttcctggt acgccgtcac
      541 agagacttgt ctggccttca ccgtttttcg ggatgacttc agcccccgct ttgttgcact
      601 cttcactctt cttctcttcc tcaaatgttt ccactggctg gctgaggacc gtgtggactt
      661 tatggaacgc agccccaaca tctcctggct ctttcactgc cgcattgtct ctcttatgtt
      721 cctcctgggc atcctggact tcctcttcgt cagccacgcc tatcacagca tcctgacccg
      781 tggggcctct gtgcagctgg tgtttggctt tgagtatgcc atcctgatga cgatggtgct
      841 caccatcttc atcaagtatg tgctgcactc cgtggacctc cagagtgaga acccctggga
      901 caacaaggct gtgtacatgc tctacacaga gctgtttaca ggcttcatca aggttctgct
      961 gtacatggcc ttcatgacca tcatgatcaa ggtgcacacc ttcccactct ttgccatccg
     1021 gcccatgtac ctggccatga gacagttcaa gaaagctgtg acagatgcca tcatgtctcg
     1081 ccgagccatc cgcaacatga acaccctgta tccagatgcc accccagagg agctccaggc
     1141 aatggacaat gtctgcatca tctgccgaga agagatggtg actggtgcca agagactgcc
     1201 ctgcaaccac attttccata ccagctgcct gcgctcctgg ttccagcggc agcagacctg
     1261 ccccacctgc cgtatggatg tccttcgtgc atcgctgcca gcgcagtcac caccaccccc
     1321 ggagcctgcg gatcaggggc caccccctgc cccccacccc ccaccactct tgcctcagcc
     1381 ccccaacttc ccccagggcc tcctgcctcc ttttcctcca ggcatgttcc cactgtggcc
     1441 ccccatgggc ccctttccac ctgtcccgcc tccccccagc tcaggagagg ctgtggctcc
     1501 tccatccacc agtgcagcag ccctttctcg gcccagtgga gcagctacaa ccacagctgc
     1561 tggcaccagt gctactgctg cttctgccac agcatctggc ccaggctctg gctctgcccc
     1621 agaggctggc cctgcccctg gtttcccctt ccctcctccc tggatgggta tgcccctgcc
     1681 tccacccttt gccttccccc caatgcctgt gccccctgcg ggctttgctg ggctgacccc
     1741 agaggagcta cgagctctgg agggccatga gcggcagcac ctggaggccc ggctgcagag
     1801 cctgcgtaac atccacacac tgctggacgc cgccatgctg cagatcaacc agtacctcac
     1861 cgtgctggcc tccttggggc actggggcca caagggcaca tcattctata ctctgttctg
     1921 caaggctcac caagggcagg agaatctgcc caaccttgga tgccaaggcc aggcccgcct
     1981 ctcgtccctt ctcttcccag gcccccccgg cctgccactt cagtcaactc cactgaggag
     2041 actgccacta cagttgttgc tgctgcctcc tccaccagca tccctagctc agaggccacg
     2101 accccaaccc caggagcctc cccaccagcc cctgaaatgg aaaggcctcc agctcctgag
     2161 tcagtgggca cagaggagat gcctgaggat ggagagcccg atgcagcaga gctccgccgg
     2221 cgccgcctgc agaagctgga gtctcctgtt gcccactgac actgccccag cccagcccca
     2281 gcctctgctc ttttgagcag ccctcgctgg aacatgtcct gccaccaagt gccagctccc
     2341 tctctgtctg caccagggag tagtaccccc agctctgaga aagaggcggc atcccctagg
     2401 ccaagtggaa agaggctggg gttcccattt gactccagtc ccaggcagcc atggggatct
     2461 cgggtcagtt ccagccttcc tctccaactc ttcagccctg tgttctgctg gggccatgaa
     2521 ggcagaaggt ttagcctctg agaagccctc ttcttccccc acccctttcc aggagaaggg
     2581 gctgcccctc caagccctac ttgtatgtgc ggagtcacac tgcagtgccg aacagtatta
     2641 gctcccgttc ccaagtgtgg actccagagg ggctggaggc aagctatgaa cttgctcgct
     2701 ggcccacccc taagactggt acccatttcc ttttcttacc ctgatctccc cagaagcctc
     2761 ttgtggtggt ggctgtgccc cctatgccct gtggcatttc tgcgtcttac tggcaaccac
     2821 acaactcagg gaaaggaatg cctgggagtg ggggtgcagg cgggcagcac tgagggaccc
     2881 tgccccgccc ctccccccag gcccctttcc tctgcagctt ctcaagtgag actgacctgt
     2941 ctcacccagc agccactgcc cagccgcact ccaggcaagg gccagtgcgc ctgctcctga
     3001 ccactgcaat cccagcgccc aaggaaggcc acttctcaac tggcagaact tctgaagttt
     3061 agaattggaa ttacttcctt actagtgtct tttggcttaa attttgtctt ttgaagttga
     3121 atgcttaatc ccgggaaaga ggaacaggag tgccagactc ctggtctttc cagtttagaa
     3181 aaggctctgt gccaaggagg gaccacagga gctgggacct gcctgcccct gtcttttccc
     3241 cttggttttg tgttacaaga gttgttggag acagtttcag atgattattt aatttgtaaa
     3301 tattgtacaa attttaatag cttaaattgt atatacagcc aaataaaaac ttgcattaac
     3361 aa
//
