LOCUS       XM_047419474            2687 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens synaptojanin 2 (SYNJ2), transcript variant
            X10, mRNA.
ACCESSION   XM_047419474
VERSION     XM_047419474.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2687
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..2687
                     /gene="SYNJ2"
                     /gene_synonym="INPP5H"
                     /note="synaptojanin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 7 ESTs, 126 long
                     SRA reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 18 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:8871"
                     /db_xref="HGNC:HGNC:11504"
                     /db_xref="MIM:609410"
     CDS             100..2661
                     /gene="SYNJ2"
                     /gene_synonym="INPP5H"
                     /codon_start=1
                     /product="synaptojanin-2 isoform X8"
                     /protein_id="XP_047275430.1"
                     /db_xref="GeneID:8871"
                     /db_xref="HGNC:HGNC:11504"
                     /db_xref="MIM:609410"
                     /translation="MALSKGLRLLGRLGAEGDCSVLLEARGRDDCLLFEAGTVATLAP
                     EEKEVIKGQYGKLTDAYGCLGELRLKSGGTSLSFLVLVTGCTSVGRIPDAEIYKITAT
                     DFYPLQEEAKEEERLIALKKILSSGVFYFSWPNDGSRFDLTVRTQKQGDDSSEWGNSF
                     FWNQLLHVPLRQHQVSCCDWLLKIICGVVTIRTVYASHKQAKACLVSRVSCERTGTRF
                     HTRGVNDDGHVSNFVETEQMIYMDDGVSSFVQIRGSVPLFWEQPGLQVGSHHLRLHRG
                     LEANAPAFDRHMVLLKEQYGQQVVVNLLGSRGGEEVLNRAFKKLLWASCHAGDTPMIN
                     FDFHQFAKGGKLEKLETLLRPQLKLHWEDFDVFTKGENVSPRFQKGTLRMNCLDCLDR
                     TNTVQSFIALEVLHLQLKTLGLSSKPIVDRFVESFKAMWSLNGHSLSKVFTGSRALEG
                     KAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYGEEVADKGGMLLDSTALL
                     VTPRILKAMTERQSEFTNFKRIRIAMGTWNVNGGKQFRSNVLRTAELTDWLLDSPQLS
                     GATDSQDDSSPADIFAVGFEEMVELSAGNIVNASTTNKKMWGEQLQKAISRSHRYILL
                     TSAQLVGVCLYIFVRPYHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQFHSTSFCFI
                     CSHLTAGQSQVKERNEDYKEITQKLCFPMGRNVFSHDYVFWCGDFNYRIDLTYEEVFY
                     FVKRQDWKKLLEFDQLQLQKSSGKIFKDFHEGAINFGPTYKYDVGSAAYDTSDKCRTP
                     AWTDRVLWWRKKHPFDKTDLCWRSWRWKFRKSMWVLGRGFSRKCPPSRAPWMPLL"
     polyA_site      2687
                     /gene="SYNJ2"
                     /gene_synonym="INPP5H"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gaaactctgg caagttgcgg gcgcgcgggg agctgtcgcg ggcagcgcgc cctcgggagg
       61 acgtggcccc ggcccccgcc cgcagtgggc ccgaccctca tggccctgag caaagggctg
      121 cggctgctgg ggcgcctggg ggccgagggg gactgtagcg tgctgctgga ggcgcgcggc
      181 cgcgacgact gcctgctgtt cgaggccggc acggtggcca cgctggctcc agaagaaaag
      241 gaagtcatta aaggacagta tggcaagctc acggacgcgt acggctgcct gggggagctg
      301 aggctgaaat ctggtggcac gtctctgagc ttcctggtgt tggtgacagg ctgcacatct
      361 gtgggcagaa ttccagatgc tgaaatctac aaaatcactg ccactgactt ttaccctctt
      421 caggaagagg ccaaggagga ggaacgcctc atagctttga agaaaatcct cagctcgggg
      481 gtgttctatt tctcatggcc aaacgatggg tctcgctttg acctgactgt ccgcacgcag
      541 aagcaggggg atgacagctc tgaatggggg aactccttct tctggaacca gctgttgcac
      601 gtgcccttga ggcagcacca ggtgagctgc tgtgactggc tgctgaagat catctgcggg
      661 gtggtcacca tccgcaccgt gtatgcctcc cacaagcagg ccaaggcctg cctcgtctct
      721 cgcgttagct gtgagcgcac aggcactcgc ttccacaccc gtggcgtgaa cgacgacggc
      781 catgtgtcca acttcgtgga gacagagcag atgatttaca tggacgatgg agtgtcatct
      841 tttgtccaga tcagaggctc cgttccgctg ttctgggaac agccagggct tcaggttggc
      901 tcccatcatc tgagactcca cagaggcctg gaagccaatg cccctgcttt cgacaggcac
      961 atggtgcttc tgaaggagca gtacgggcag caggtggtcg tgaaccttct gggaagcaga
     1021 ggcggagagg aggtgctcaa cagagccttc aagaagctgc tctgggcttc ttgccacgcg
     1081 ggcgacacgc ctatgatcaa ttttgacttc catcagtttg ccaaaggtgg gaagctagag
     1141 aaattggaga ccctcttgag gccacagtta aagctgcact gggaagactt cgatgtgttc
     1201 acaaaggggg agaacgtcag tccacgtttt cagaaaggca ctttgcggat gaactgtctt
     1261 gactgcctgg accgaaccaa cactgtgcag agcttcatcg cgctcgaggt cctgcatctg
     1321 cagctcaaga ccctggggct gagttcaaaa cccatcgttg accgctttgt ggagtccttc
     1381 aaagccatgt ggtctctgaa tggccacagc ctgagcaagg tgttcacagg cagcagagcc
     1441 ctggaaggga aggccaaggt ggggaagctg aaggatggag cccggtccat gtctcgaacc
     1501 atccagtcca acttcttcga cggggtgaag caggaggcca tcaagctgct gctggttggg
     1561 gacgtctacg gcgaggaggt ggcagacaaa gggggcatgc tgctggacag cacggcgctc
     1621 ctggtgactc ccaggatcct gaaagctatg actgagcgtc agtccgaatt cacaaatttc
     1681 aagcggatcc ggattgctat ggggacctgg aacgtgaacg gaggaaagca gttccggagc
     1741 aacgtgctca ggacggcgga gctgacagac tggctgctcg actcgcccca gctctcggga
     1801 gctaccgact cccaggatga cagcagccca gctgacatat ttgctgtggg gtttgaagag
     1861 atggtggaat tgagcgcagg gaatattgtc aatgccagta ctaccaacaa gaagatgtgg
     1921 ggtgaacagc ttcagaaagc catctcacgc tctcatagat acattctgtt gacttcggca
     1981 cagctggtgg gcgtctgtct ttatatcttt gtacgtccat accatgtccc gttcatcagg
     2041 gacgtagcca tcgacacagt gaagacgggc atggggggca aggcggggaa caagggcgcc
     2101 gtcggcatcc gcttccagtt ccacagcacc agcttctgct tcatatgtag tcacctgacg
     2161 gccgggcagt cccaggtgaa ggagcggaat gaagactaca aggagatcac ccagaaactc
     2221 tgcttcccaa tggggagaaa tgttttttct catgattatg tattttggtg tggcgatttc
     2281 aactaccgca ttgatcttac ttatgaagaa gtcttctatt ttgttaaacg ccaagactgg
     2341 aagaaacttc tggaatttga tcaactacag ctacagaaat caagtggaaa aatttttaag
     2401 gactttcacg aaggagccat taactttgga cccacctaca agtatgacgt tggctcagcc
     2461 gcctacgata caagcgacaa atgccgcacc cccgcctgga cagacagggt gctgtggtgg
     2521 aggaagaaac atccctttga taaaacagac ctgtgctggc gatcgtggag gtggaagttc
     2581 aggaagtcga tgtgggtgct cgggagaggg ttttccagga agtgtcctcc ttccagggcc
     2641 ccctggatgc cactgttgta gtaaaccttc aatcaccgac cttagaa
//
