LOCUS       XM_047419472            7195 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens synaptojanin 2 (SYNJ2), transcript variant
            X3, mRNA.
ACCESSION   XM_047419472
VERSION     XM_047419472.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7195
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..7195
                     /gene="SYNJ2"
                     /gene_synonym="INPP5H"
                     /note="synaptojanin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 mRNAs, 29 ESTs, 1787
                     long SRA reads, 8 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     10 samples with support for all annotated introns"
                     /db_xref="GeneID:8871"
                     /db_xref="HGNC:HGNC:11504"
                     /db_xref="MIM:609410"
     CDS             604..4383
                     /gene="SYNJ2"
                     /gene_synonym="INPP5H"
                     /codon_start=1
                     /product="synaptojanin-2 isoform X3"
                     /protein_id="XP_047275428.1"
                     /db_xref="GeneID:8871"
                     /db_xref="HGNC:HGNC:11504"
                     /db_xref="MIM:609410"
                     /translation="MIYMDDGVSSFVQIRGSVPLFWEQPGLQVGSHHLRLHRGLEANA
                     PAFDRHMVLLKEQYGQQVVVNLLGSRGGEEVLNRAFKKLLWASCHAGDTPMINFDFHQ
                     FAKGGKLEKLETLLRPQLKLHWEDFDVFTKGENVSPRFQKGTLRMNCLDCLDRTNTVQ
                     SFIALEVLHLQLKTLGLSSKPIVDRFVESFKAMWSLNGHSLSKVFTGSRALEGKAKVG
                     KLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYGEEVADKGGMLLDSTALLVTPRI
                     LKAMTERQSEFTNFKRIRIAMGTWNVNGGKQFRSNVLRTAELTDWLLDSPQLSGATDS
                     QDDSSPADIFAVGFEEMVELSAGNIVNASTTNKKMWGEQLQKAISRSHRYILLTSAQL
                     VGVCLYIFVRPYHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQFHSTSFCFICSHLT
                     AGQSQVKERNEDYKEITQKLCFPMGRNVFSHDYVFWCGDFNYRIDLTYEEVFYFVKRQ
                     DWKKLLEFDQLQLQKSSGKIFKDFHEGAINFGPTYKYDVGSAAYDTSDKCRTPAWTDR
                     VLWWRKKHPFDKTAGELNLLDSDLDVDTKVRHTWSPGALQYYGRAELQASDHRPVLAI
                     VEVEVQEVDVGARERVFQEVSSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTL
                     GSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRAVKIRPKTKDWLKGLREE
                     IIRKRDSMAPVSPTANSCLLEENFDFTSLDYESEGDILEDDEDYLVDEFNQPGVSDSE
                     LGGDDLSDVPGPTALAPPSKSPALTKKKQHPTYKDDADLVELKRELEAVGEFRHRSPS
                     RSLSVPNRPRPPQPPQRPPPPTGLMVKKSASDASISSGTHGQYSILQTARLLPGAPQQ
                     PPKARTGISKPYNVKQIKTTNAQEAEAAIRCLLEARGGASEEALSAVAPRDLEASSEP
                     EPTPGAAKPETPQAPPLLPRRPPPRVPAIKKPTLRRTGKPLSPEEQFEQQTVHFTIGP
                     PETSVEAPPVVTAPRVPPVPKPRTFQPGKAAERPSHRKPASDEAPPGAGASVPPPLEA
                     PPLVPKVPPRRKKSAPAAFHLQVLQSNSQLLQGLTYNSSDSPSGHPPAAGTVFPQGDF
                     LSTSSATSPDSDGTKAMKPEAAPLLGDYQDPFWNLLHHPKLLNNTWLSKSSDPLDSGT
                     RSPKRDPIDPVSAGASAAKAELPPDHEHKTLGHWVTISDQEKRTALQVFDPLAKT"
ORIGIN      
        1 gatagaacgc tagtgaaagc tccagaagaa aaggaagtca ttaaaggaca gtatggcaag
       61 ctcacggacg cgtacggctg cctgggggag ctgaggctga aatctggtgg cacgtctctg
      121 agcttcctgg tgttggtgac aggctgcaca tctgtgggca gaattccaga tgctgaaatc
      181 tacaaaatca ctgccactga cttttaccct cttcaggaag aggccaagga ggaggaacgc
      241 ctcatagctt tgaagaaaat cctcagctcg ggggtgttct atttctcatg gccaaacgat
      301 gggtctcgct ttgacctgac tgtccgcacg cagaagcagg gggatgacag ctctgaatgg
      361 gggaactcct tcttctggaa ccagctgttg cacgtgccct tgaggcagca ccaggtgagc
      421 tgctgtgact ggctgctgaa gatcatctgc ggggtggtca ccatccgcac cgtgtatgcc
      481 tcccacaagc aggccaaggc ctgcctcgtc tctcgcgtta gctgtgagcg cacaggcact
      541 cgcttccaca cccgtggcgt gaacgacgac ggccatgtgt ccaacttcgt ggagacagag
      601 cagatgattt acatggacga tggagtgtca tcttttgtcc agatcagagg ctccgttccg
      661 ctgttctggg aacagccagg gcttcaggtt ggctcccatc atctgagact ccacagaggc
      721 ctggaagcca atgcccctgc tttcgacagg cacatggtgc ttctgaagga gcagtacggg
      781 cagcaggtgg tcgtgaacct tctgggaagc agaggcggag aggaggtgct caacagagcc
      841 ttcaagaagc tgctctgggc ttcttgccac gcgggcgaca cgcctatgat caattttgac
      901 ttccatcagt ttgccaaagg tgggaagcta gagaaattgg agaccctctt gaggccacag
      961 ttaaagctgc actgggaaga cttcgatgtg ttcacaaagg gggagaacgt cagtccacgt
     1021 tttcagaaag gcactttgcg gatgaactgt cttgactgcc tggaccgaac caacactgtg
     1081 cagagcttca tcgcgctcga ggtcctgcat ctgcagctca agaccctggg gctgagttca
     1141 aaacccatcg ttgaccgctt tgtggagtcc ttcaaagcca tgtggtctct gaatggccac
     1201 agcctgagca aggtgttcac aggcagcaga gccctggaag ggaaggccaa ggtggggaag
     1261 ctgaaggatg gagcccggtc catgtctcga accatccagt ccaacttctt cgacggggtg
     1321 aagcaggagg ccatcaagct gctgctggtt ggggacgtct acggcgagga ggtggcagac
     1381 aaagggggca tgctgctgga cagcacggcg ctcctggtga ctcccaggat cctgaaagct
     1441 atgactgagc gtcagtccga attcacaaat ttcaagcgga tccggattgc tatggggacc
     1501 tggaacgtga acggaggaaa gcagttccgg agcaacgtgc tcaggacggc ggagctgaca
     1561 gactggctgc tcgactcgcc ccagctctcg ggagctaccg actcccagga tgacagcagc
     1621 ccagctgaca tatttgctgt ggggtttgaa gagatggtgg aattgagcgc agggaatatt
     1681 gtcaatgcca gtactaccaa caagaagatg tggggtgaac agcttcagaa agccatctca
     1741 cgctctcata gatacattct gttgacttcg gcacagctgg tgggcgtctg tctttatatc
     1801 tttgtacgtc cataccatgt cccgttcatc agggacgtag ccatcgacac agtgaagacg
     1861 ggcatggggg gcaaggcggg gaacaagggc gccgtcggca tccgcttcca gttccacagc
     1921 accagcttct gcttcatatg tagtcacctg acggccgggc agtcccaggt gaaggagcgg
     1981 aatgaagact acaaggagat cacccagaaa ctctgcttcc caatggggag aaatgttttt
     2041 tctcatgatt atgtattttg gtgtggcgat ttcaactacc gcattgatct tacttatgaa
     2101 gaagtcttct attttgttaa acgccaagac tggaagaaac ttctggaatt tgatcaacta
     2161 cagctacaga aatcaagtgg aaaaattttt aaggactttc acgaaggagc cattaacttt
     2221 ggacccacct acaagtatga cgttggctca gccgcctacg atacaagcga caaatgccgc
     2281 acccccgcct ggacagacag ggtgctgtgg tggaggaaga aacatccctt tgataaaaca
     2341 gctggagaac tcaaccttct agacagtgat ctagatgttg acaccaaagt cagacacacc
     2401 tggtctcctg gtgccctgca gtattatggt cgtgcggagc tacaagcgtc tgatcacaga
     2461 cctgtgctgg cgatcgtgga ggtggaagtt caggaagtcg atgtgggtgc tcgggagagg
     2521 gttttccagg aagtgtcctc cttccagggc cccctggatg ccactgttgt agtaaacctt
     2581 caatcaccga ccttagaaga gaaaaacgag tttccagagg acctgcgtac tgagctcatg
     2641 cagaccttgg ggagttatgg gacaattgtt cttgtcagga tcaaccaagg gcagatgctg
     2701 gtaacttttg cagacagtca ctcggctctc agtgtcctgg acgtggacgg tatgaaggtg
     2761 aaaggcagag cagtgaagat tagaccgaag accaaggact ggctgaaagg tttgcgagag
     2821 gagatcattc ggaaacgaga cagcatggcc cccgtgtctc ccactgccaa ctcctgtttg
     2881 ctggaggaaa actttgactt cacaagtttg gactatgagt cagaagggga tattcttgaa
     2941 gacgatgaag actacttggt ggatgaattc aatcagcctg gagtctcgga cagtgaactc
     3001 gggggagacg acctctctga tgtccccggc cccacagcac tggctcctcc cagcaagtca
     3061 cctgctctca ccaaaaagaa gcagcatcca acgtacaaag atgacgcgga cctggtggag
     3121 ctcaagcggg agctggaagc cgtcggggag ttccgccacc gttctccgag caggtctctg
     3181 tcggtcccca accggcctcg gccacctcaa cccccgcaga gacccccccc tccaaccggt
     3241 ttaatggtga aaaagtcggc ttcagatgcg tccatctcct ccggcaccca tggacagtat
     3301 tcaattttgc agacggcaag acttctacca ggagcacctc agcaacctcc caaggctcgg
     3361 actggaataa gtaaacctta taatgtcaag cagatcaaaa ccaccaatgc ccaggaggca
     3421 gaagcagcaa tccggtgtct cctggaagcc agaggaggtg cctccgaaga agccctaagt
     3481 gccgtggccc caagggacct tgaagcatcc tctgaaccag agcccacacc gggggcagcc
     3541 aaaccagaga ccccacaggc gcccccactc cttccccgtc ggcccccacc cagagttcct
     3601 gccatcaaga agccaacctt gagaaggaca ggaaagcccc tgtcaccgga agaacagttt
     3661 gagcaacaga ctgtccattt tacaatcggg cccccggaga caagcgttga ggcccctcct
     3721 gtcgtgacag cccctcgagt ccctcctgtt cccaaaccaa gaacatttca gcctgggaaa
     3781 gctgcagaga ggccaagcca caggaagcca gcatcagacg aagcccctcc tggggcagga
     3841 gcctctgtgc caccacctct ggaggcgccg cctcttgtgc ccaaggtacc cccgaggagg
     3901 aagaagtcag cccccgcagc cttccacctg caggtcctgc agagcaacag ccagcttctc
     3961 cagggcctca cttacaatag cagtgacagc ccctctgggc acccacctgc cgcgggcacc
     4021 gtcttcccac aaggggactt tctcagcact tcatctgcta caagccccga cagcgatggc
     4081 accaaagcga tgaagccaga ggcagcccca cttcttggtg attatcagga ccccttctgg
     4141 aaccttcttc accaccctaa actgttgaat aacacttggc tttctaagag ctcagaccct
     4201 ttggactcag gaaccaggag ccccaaaaga gatcccatag acccagtgtc agctggcgct
     4261 tcagctgcca aggcagagct gccaccagat catgaacaca aaaccttagg tcactgggtg
     4321 acaatcagtg accaagaaaa gaggacagca ctgcaggtgt ttgacccact ggcaaaaaca
     4381 tgactgagca gctttgaagg ctgcagtcct atagaatgca taccttcctc cctctagaca
     4441 tccctccacc agaagagaca tctatttaaa ggcacactgg ccaaaacgtt tgtgcatctg
     4501 tcactctcgt gtagtttaca aaaatcgtgt ctcttattca gtaagatggt tactcagcca
     4561 ccaaaatata tttcactcaa ggcttgtaca tctgaagttt gctcttcaag gaatgggaac
     4621 cttcctgtta aattcggtgt atggatttta agaaaggaat ctagccaatg aggtccaaga
     4681 agttctcacc cattgaattt ttaaatggct gttcagttca tgttgtacgt gatggagatt
     4741 tgtcttttgt tttatttgca ttttacagat ttggtataac attttgggga gccacctgaa
     4801 ggttgatgta taaagtaagg attagagaaa gaggtcgttg tgaccattag tagctgtcct
     4861 ggcccactta aacaaggtta caaaaaatca gagtcggaag cagccaaata ggtcaaccta
     4921 atgactagac tgtacattcc catgagcctt catgtttaag tgtgtacatg tgcgttaacc
     4981 ttgatgatgc gtgaatcccg agggagccgg tggcatacac cgttagctta accttagctt
     5041 aaactagctg aaggctcctg tgccatgtct tagacattgc atgccctatc aattactata
     5101 atcctgagcc atggtgtgct actgaaacca atttttatcc accatctagt ccttattaaa
     5161 tgaaacctca cggatccttt gttccgctta tattccatgc ataccacata aaagcacaca
     5221 gtgcgaaaac tcttgctgat acgcgatatt gattctcatt gttagaatat ggagagtgtt
     5281 tcagcctcgt ctgtccggct ggagcttcgg gatggaaagt gctatgtgtc cctgcatata
     5341 agaatcacca ggccagtgtt tctgggtttg cttgtctata tgtttgtcta tattttttgc
     5401 ctatacattt ttcccacgtt tccaacagca cttctcacct attcaataac tgaaaaagac
     5461 attaccatag tgctttacat ttttaaagta atgttacaag gtctggaatc catttggagc
     5521 agataccgtg ttttcgctat ttaataagaa gttcagtagt gaaatcttac tgtaccgcct
     5581 gttgtatctg ggagcctcgt acagaggctc gcacagcagt gatcaagtgt catcccttac
     5641 gtgactgggg gatgtctgtc ctaaaagctg actgctagga tagtaaggat catcttgcct
     5701 gggctatgcc actgtcttgt taccaattag acatctggaa tttcataatt agttttcatt
     5761 gtcactgtca agatatattg cagattactt aaatatggcc atcaaaacaa aagttacaac
     5821 acgtatctct tttcatctga aaactaatac ctggaaaagg ataaaaaaaa aaaggaatcc
     5881 gtgacccaca gagctagaca gataagatgc atagttgacc agtcataaaa ggcggtgttt
     5941 aggtgatcag gatgccgttg gtggcattta cgtgctttat atgattttta cctctgtaac
     6001 aaacacaaga aataaacaga atggtcctta acagagtttg ggggagagag caagatgggt
     6061 tccttggaga agctgatttg ccaagatgca catcgctatt aacagccaga gtcataaatg
     6121 aaatgaaatt gaagaattca ttcaaatgct cttttcccta taacctcttt tctcaccaaa
     6181 aaggagataa atttgaaaac agataaatgt aacaaccagt caaagaagca ggggaaaagt
     6241 aagctcctcc aaagttgctt gcagtgctgg aaatagatct catttttagg ttttctcttc
     6301 gttccagata ccaaataaat gggacagaga ataaaatttt tgttaaaata tgtgctcatc
     6361 tcctaagtag ctcttcagag tctgaccgta agtaaaaaca cacagaattg tgttgactgg
     6421 gggaggtgaa tcacaaaaaa gttacgagga gtttaagagt taaatattat ttgatcgtgg
     6481 ctgtcaaatt tagtgaacaa catagattgg atttggagtt ggtagtaggt atggttctca
     6541 taccagaatt ctcttaaaaa aaaaaaaaag gacaattgga attgccttat ttatttttaa
     6601 aatcaatgct tactagttgg taggattccc aggtcagcag cagggttgat taaataatct
     6661 tgacaatgag cagctgccat cttgggggat ttcattctgt ggttttttaa atgtttcgtc
     6721 tttgatgcta ccatccaggg cttcttattg tgaccttgta gcctattttg ttcctgctgt
     6781 tctctaacat ggtgcagttc acgcagactg gtttaggtac ttcacaactc accattgtct
     6841 ctctgacccc aagcctagtc ccttttacat caccatcttc tcagacttct tgcctattct
     6901 taaaatatgt tttggttaat gattgaatta ggacatcagc ttaagcaatt cctgtaacgg
     6961 tttaacgttg ttgaagttca aggcacataa taaaattctc cctgatgtgt gtgtaagtat
     7021 aaacaaagta atgtatcaaa gcgttcactt tataatgaag tcatttcatt gggaaggaaa
     7081 gctgcaaaga ttattggggg actagtgatt aataaaatcc tgtaatattt ttgaagtgaa
     7141 aatttgtact gaaattgtac atgataccta ttaaatgttt ttgtcttttt ttaaa
//
