LOCUS       XM_047441048            3918 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens synaptojanin 1 (SYNJ1), transcript variant
            X18, mRNA.
ACCESSION   XM_047441048
VERSION     XM_047441048.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000021.9) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3918
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="21"
     gene            1..3918
                     /gene="SYNJ1"
                     /gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
                     /note="synaptojanin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 35 ESTs, 218 long SRA
                     reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 26 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:8867"
                     /db_xref="HGNC:HGNC:11503"
                     /db_xref="MIM:604297"
     CDS             1..3912
                     /gene="SYNJ1"
                     /gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
                     /codon_start=1
                     /product="synaptojanin-1 isoform X18"
                     /protein_id="XP_047297004.1"
                     /db_xref="GeneID:8867"
                     /db_xref="HGNC:HGNC:11503"
                     /db_xref="MIM:604297"
                     /translation="MRKRWACWSGSDAPGGCGGGCGRRRRRSRRKRAASEERRMAFSK
                     GFRIYHKLDPPPFSLIVETRHKEECLMFESGAVAVLSSAEKEAIKGTYSKVLDAYGLL
                     GVLRLNLGDTMLHYLVLVTGCMSVGKIQESEVFRVTSTEFISLRIDSSDEDRISEVRK
                     VLNSGNFYFAWSASGISLDLSLNAHRSMQEQTTDNRFFWNQSLHLHLKHYGVNCDDWL
                     LRLMCGGVEIRTIYAAHKQAKACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVV
                     YLDDSVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFEANAPAFDRHFRTLKNLYGK
                     QIIVNLLGSKEGEHMLSKAFQSHLKASEHAADIQMVNFDYHQMVKGGKAEKLHSVLKP
                     QVQKFLDYGFFYFNGSEVQRCQSGTVRTNCLDCLDRTNSVQAFLGLEMLAKQLEALGL
                     AEKPQLVTRFQEVFRSMWSVNGDSISKIYAGTGALEGKAKAGKLKDGARSVTRTIQNN
                     FFDSSKQEAIDVLLLGNTLNSDLADKARALLTTGSLRASSKVLKSMCENFYKYSKPKK
                     IRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQEFQDKRSKPTDIFAIGFE
                     EMVELNAGNIVSASTTNQKLWAVELQKTISRDNKYVLLASEQLVGVCLFVFIRPQHAP
                     FIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKERNEDFIE
                     IARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQK
                     NAGQVFRGFLEGKVTFAPTYKYDLFSDDYDTSEKCRTPAWTDRVLWRRRKWPFDRSAE
                     DLDLLNASFQDESKILYTWTPGTLLHYGRAELKTSDHRPVVALIDIDIFEVEAEERQN
                     IYKEVIAVQGPPDGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKM
                     WVTFLEGSSALNVLSLNGKELLNRTITIALKSPDWIKNLEEEMSLEKISIALPSSTSS
                     TLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSP
                     TISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPR
                     PVAPPTRPAPPQRPPPPSGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHA
                     RASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAP
                     MPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQQEQPSG"
     polyA_site      3918
                     /gene="SYNJ1"
                     /gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgcggaaga gatgggcctg ctggagcgga agtgacgctc ccggcggctg tggcggcggc
       61 tgcgggagaa ggaggaggag gagccggagg aagagggctg cctccgaaga aaggagaatg
      121 gcgttcagta aaggattccg gatctatcac aaattggatc ccccaccttt cagcctcata
      181 gtggaaacta ggcataagga agaatgtctc atgttcgagt ctggggctgt cgctgtgctc
      241 tcatctgcag aaaaagaggc aatcaagggt acatactcca aagtactgga tgcatatgga
      301 ctcttaggtg ttctgcggtt aaatcttggt gatactatgt tacattatct ggtcctagtc
      361 actggatgta tgtctgttgg aaaaattcaa gaatctgaag ttttccgagt tacttccact
      421 gagtttatat cactgcgaat cgattcttca gatgaggatc gcatttcaga agtgcggaaa
      481 gttttgaatt caggaaactt ttattttgca tggtctgcat ctggcatcag tttagatttg
      541 agtcttaatg cgcatcgtag catgcaagaa cagacaactg ataatagatt tttctggaat
      601 cagtctttgc atttgcatct caaacactat ggcgtgaatt gtgatgactg gttattacgt
      661 cttatgtgtg gaggagtaga aatcagaaca atttatgctg ctcataaaca ggcgaaggct
      721 tgcctcattt caagattaag ctgtgaacga gctgggacca ggtttaatgt ccggggaaca
      781 aatgatgatg gtcatgttgc caattttgta gaaacagaac aggttgtgta cttagatgac
      841 tcagtttctt ccttcataca aatccgagga tctgttccat tgttctggga gcaaccaggg
      901 ttgcaagtgg gatctcatcg tgtccgtatg tcaaggggat ttgaagccaa tgcacctgct
      961 tttgacaggc attttagaac acttaagaac ttatatggta aacaaataat agtaaatttg
     1021 cttggatcta aggaaggtga acatatgcta agtaaagctt tccagagtca tttgaaagct
     1081 tctgaacatg ctgctgatat ccagatggtg aattttgact atcatcaaat ggttaaggga
     1141 ggaaaggcag aaaaattaca tagtgttctt aaacctcaag tccagaagtt tctagattat
     1201 ggattttttt atttcaatgg aagtgaagtt caaagatgcc agagtggtac agttcgaaca
     1261 aactgcttgg attgtcttga tagaacaaat agtgtgcagg catttcttgg cttagagatg
     1321 ctagctaaac agttggaagc tcttggttta gctgaaaagc ctcagttggt gactcgcttt
     1381 caagaagttt ttcggtcaat gtggtccgtg aatggtgatt caatcagtaa gatatatgca
     1441 ggaactggag ctcttgaagg gaaagcgaag gctggaaagt taaaagatgg tgctcgctct
     1501 gttacccgaa caattcagaa taacttcttt gacagctcca agcaagaggc cattgatgtt
     1561 ttgctactgg gaaatactct gaatagtgat ttagctgaca aagctcgagc acttttaact
     1621 actggaagtt tgcgtgcatc ttctaaagta ctaaagagca tgtgtgagaa tttctacaaa
     1681 tattcaaagc ctaagaaaat tcgagtatgt gtcggaacct ggaatgtgaa tggtgggaag
     1741 caatttcgca gcatagcttt taagaatcag acactcactg actggcttct tgatgcaccc
     1801 aagttagctg gcatccagga gtttcaagat aaaagaagta agccaactga tatatttgca
     1861 attggttttg aagaaatggt agaattgaat gctggaaaca ttgtgagtgc aagcacaaca
     1921 aatcagaagc tctgggctgt agaacttcag aagacaatct ccagagacaa caagtatgtg
     1981 ctgctggctt ctgaacagtt ggtgggcgtc tgtttgtttg tttttatcag accacagcat
     2041 gctcctttta tcagggatgt tgcagttgat actgtgaaga ctggaatggg aggtgcaact
     2101 ggaaataagg gagcagttgc aatccgaatg ctcttccata caaccagcct ttgcttcgtc
     2161 tgtagccact ttgctgcagg gcagtcacaa gtcaaagaaa gaaatgaaga ttttatagaa
     2221 atagcacgaa aattgagttt tcctatggga aggatgctat tttcccatga ctatgtattt
     2281 tggtgtggtg atttcaacta tcgaatcgat ctccctaacg aagaagttaa agagctcata
     2341 agacagcaaa attgggattc tcttatagca ggagatcaac ttatcaatca gaaaaatgct
     2401 ggacaggttt ttagaggatt tttagaagga aaggtaacct ttgctccgac atataagtat
     2461 gacttgtttt ctgacgacta tgacaccagt gaaaagtgcc gcacccctgc ctggacagac
     2521 cgtgtccttt ggagaaggag gaaatggcct tttgatagat cagctgaaga tctagatctt
     2581 ctaaatgcta gttttcaaga tgaaagcaaa attctgtaca cgtggactcc aggcactttg
     2641 ctgcactatg gaagagctga gctgaagact tctgaccaca ggcctgtcgt tgccctgatt
     2701 gatatagata tatttgaagt tgaagctgaa gagaggcaaa acatttataa agaagtaatt
     2761 gcagttcagg gtccaccaga tggtacagta ttggtctcaa tcaaaagttc tttaccagaa
     2821 aataattttt ttgatgatgc cttgattgat gagcttctgc agcagtttgc aagttttggt
     2881 gaagttatac ttataagatt tgtagaagat aaaatgtggg ttacattttt ggagggaagc
     2941 tctgccttga atgttctgag cctaaatggt aaagagttat tgaatcggac tataactatt
     3001 gctttaaaaa gtccagactg gatcaaaaat ttggaagaag aaatgagttt agagaaaatt
     3061 agcattgcat tgccatcatc aacaagctct accctgcttg gtgaagatgc agaggttgca
     3121 gcagattttg atatggaagg tgatgttgat gactatagtg ctgaagtgga ggaacttctt
     3181 cctcagcatc tccagccatc ttcaagttcc ggccttggta cttcccccag ctcttcaccc
     3241 cgaactagtc cctgccagtc acctacaata tcagagggtc ctgtaccttc ccttcccatc
     3301 agaccaagcc gagcaccgtc aagaactcct gggcctccca gtgcacagag ttctcctatt
     3361 gacgcgcagc cagcaacgcc gctgccgcag aaagaccccg cccagccctt ggagcccaag
     3421 cggccgccgc cgccccgccc ggtcgcccct cccacacgcc cggctccccc acagagacct
     3481 cctccgcctt caggacgcag tcagccttca cctcaagcag gacttgcagg cccaggacct
     3541 gctggataca gtacagccag accgacgatt cctcctcgtg ctggagttat cagtgcccca
     3601 cagagccacg cgcgggcatc tgctggaaga ctgactcctg aaagccaaag caaaacatca
     3661 gaaacgtcga aaggttcaac tttccttcct gaaccactga agcctcaggc tgcttttcct
     3721 ccgcagtctt ctttgccccc gcctgctcaa aggttgcaag agcctcttgt ccctgtggca
     3781 gcacctatgc ctcagtctgg cccccagcca aatttggaaa ccccaccaca accaccacct
     3841 cgaagcaggt catcccatag cttgccttca gaagcttcct cacaaccgca acaggagcaa
     3901 ccatcagggt aacaggta
//
