LOCUS       XM_047441036            6973 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens synaptojanin 1 (SYNJ1), transcript variant
            X5, mRNA.
ACCESSION   XM_047441036
VERSION     XM_047441036.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000021.9) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6973
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="21"
     gene            1..6973
                     /gene="SYNJ1"
                     /gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
                     /note="synaptojanin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 42 ESTs, 738 long SRA
                     reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:8867"
                     /db_xref="HGNC:HGNC:11503"
                     /db_xref="MIM:604297"
     CDS             1..4737
                     /gene="SYNJ1"
                     /gene_synonym="DEE53; EIEE53; INPP5G; PARK20"
                     /codon_start=1
                     /product="synaptojanin-1 isoform X5"
                     /protein_id="XP_047296992.1"
                     /db_xref="GeneID:8867"
                     /db_xref="HGNC:HGNC:11503"
                     /db_xref="MIM:604297"
                     /translation="MRKRWACWSGSDAPGGCGGGCGRRRRRSRRKRAASEERRMAFSK
                     GFRIYHKLDPPPFSLIVETRHKEECLMFESGAVAVLSSAEKEAIKGTYSKVLDAYGLL
                     GVLRLNLGDTMLHYLVLVTGCMSVGKIQESEVFRVTSTEFISLRIDSSDEDRISEVRK
                     VLNSGNFYFAWSASGISLDLSLNAHRSMQEQTTDNRFFWNQSLHLHLKHYGVNCDDWL
                     LRLMCGGVEIRTIYAAHKQAKACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVV
                     YLDDSVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFEANAPAFDRHFRTLKNLYGK
                     QIIVNLLGSKEGEHMLSKAFQSHLKASEHAADIQMVNFDYHQMVKGGKAEKLHSVLKP
                     QVQKFLDYGFFYFNGSEVQRCQSGTVRTNCLDCLDRTNSVQAFLGLEMLAKQLEALGL
                     AEKPQLVTRFQEVFRSMWSVNGDSISKIYAGTGALEGKAKAGKLKDGARSVTRTIQNN
                     FFDSSKQEAIDVLLLGNTLNSDLADKARALLTTGSLRASSKVLKSMCENFYKYSKPKK
                     IRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQEFQDKRSKPTDIFAIGFE
                     EMVELNAGNIVSASTTNQKLWAVELQKTISRDNKYVLLASEQLVGVCLFVFIRPQHAP
                     FIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKERNEDFIE
                     IARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQK
                     NAGQVFRGFLEGKVTFAPTYKYDLFSDDYDTSEKCRTPAWTDRVLWRRRKWPFDRSAE
                     DLDLLNASFQDESKILYTWTPGTLLHYGRAELKTSDHRPVVALIDIDIFEVEAEERQN
                     IYKEVIAVQGPPDGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKM
                     WVTFLEGSSALNVLSLNGKELLNRTITIALKSPDWIKNLEEEMSLEKISIALPSSTSS
                     TLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSP
                     TISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKRPPPPR
                     PVAPPTRPAPPQRPPPPSAPKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIP
                     PRAGVISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPA
                     QRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRSSHSLPSEASSQPQVKTNGISDGK
                     RESPLKIDPFEDLSFNLLAVSKAQLSVQTSPVPTPDPKRLIQLPSATQSNVLSSVSCM
                     PTMPPIPARSQSQENMRSSPNPFITGLTRTNPFSDRTAAPGNPFRAKSEESEATSWFS
                     KEEPVTISPFPSLQPLGHNKSRASSSLDGFKDSFDLQGQSTLKISNPKGWVTFEEEED
                     FGVKGKSKSACSDLLGNQPSSFSGSNLTLNDDWNKGTNVSFCVLPSRRPPPPPVPLLP
                     PGTSPPVDPFTTLASKASPTLDFTER"
ORIGIN      
        1 atgcggaaga gatgggcctg ctggagcgga agtgacgctc ccggcggctg tggcggcggc
       61 tgcgggagaa ggaggaggag gagccggagg aagagggctg cctccgaaga aaggagaatg
      121 gcgttcagta aaggattccg gatctatcac aaattggatc ccccaccttt cagcctcata
      181 gtggaaacta ggcataagga agaatgtctc atgttcgagt ctggggctgt cgctgtgctc
      241 tcatctgcag aaaaagaggc aatcaagggt acatactcca aagtactgga tgcatatgga
      301 ctcttaggtg ttctgcggtt aaatcttggt gatactatgt tacattatct ggtcctagtc
      361 actggatgta tgtctgttgg aaaaattcaa gaatctgaag ttttccgagt tacttccact
      421 gagtttatat cactgcgaat cgattcttca gatgaggatc gcatttcaga agtgcggaaa
      481 gttttgaatt caggaaactt ttattttgca tggtctgcat ctggcatcag tttagatttg
      541 agtcttaatg cgcatcgtag catgcaagaa cagacaactg ataatagatt tttctggaat
      601 cagtctttgc atttgcatct caaacactat ggcgtgaatt gtgatgactg gttattacgt
      661 cttatgtgtg gaggagtaga aatcagaaca atttatgctg ctcataaaca ggcgaaggct
      721 tgcctcattt caagattaag ctgtgaacga gctgggacca ggtttaatgt ccggggaaca
      781 aatgatgatg gtcatgttgc caattttgta gaaacagaac aggttgtgta cttagatgac
      841 tcagtttctt ccttcataca aatccgagga tctgttccat tgttctggga gcaaccaggg
      901 ttgcaagtgg gatctcatcg tgtccgtatg tcaaggggat ttgaagccaa tgcacctgct
      961 tttgacaggc attttagaac acttaagaac ttatatggta aacaaataat agtaaatttg
     1021 cttggatcta aggaaggtga acatatgcta agtaaagctt tccagagtca tttgaaagct
     1081 tctgaacatg ctgctgatat ccagatggtg aattttgact atcatcaaat ggttaaggga
     1141 ggaaaggcag aaaaattaca tagtgttctt aaacctcaag tccagaagtt tctagattat
     1201 ggattttttt atttcaatgg aagtgaagtt caaagatgcc agagtggtac agttcgaaca
     1261 aactgcttgg attgtcttga tagaacaaat agtgtgcagg catttcttgg cttagagatg
     1321 ctagctaaac agttggaagc tcttggttta gctgaaaagc ctcagttggt gactcgcttt
     1381 caagaagttt ttcggtcaat gtggtccgtg aatggtgatt caatcagtaa gatatatgca
     1441 ggaactggag ctcttgaagg gaaagcgaag gctggaaagt taaaagatgg tgctcgctct
     1501 gttacccgaa caattcagaa taacttcttt gacagctcca agcaagaggc cattgatgtt
     1561 ttgctactgg gaaatactct gaatagtgat ttagctgaca aagctcgagc acttttaact
     1621 actggaagtt tgcgtgcatc ttctaaagta ctaaagagca tgtgtgagaa tttctacaaa
     1681 tattcaaagc ctaagaaaat tcgagtatgt gtcggaacct ggaatgtgaa tggtgggaag
     1741 caatttcgca gcatagcttt taagaatcag acactcactg actggcttct tgatgcaccc
     1801 aagttagctg gcatccagga gtttcaagat aaaagaagta agccaactga tatatttgca
     1861 attggttttg aagaaatggt agaattgaat gctggaaaca ttgtgagtgc aagcacaaca
     1921 aatcagaagc tctgggctgt agaacttcag aagacaatct ccagagacaa caagtatgtg
     1981 ctgctggctt ctgaacagtt ggtgggcgtc tgtttgtttg tttttatcag accacagcat
     2041 gctcctttta tcagggatgt tgcagttgat actgtgaaga ctggaatggg aggtgcaact
     2101 ggaaataagg gagcagttgc aatccgaatg ctcttccata caaccagcct ttgcttcgtc
     2161 tgtagccact ttgctgcagg gcagtcacaa gtcaaagaaa gaaatgaaga ttttatagaa
     2221 atagcacgaa aattgagttt tcctatggga aggatgctat tttcccatga ctatgtattt
     2281 tggtgtggtg atttcaacta tcgaatcgat ctccctaacg aagaagttaa agagctcata
     2341 agacagcaaa attgggattc tcttatagca ggagatcaac ttatcaatca gaaaaatgct
     2401 ggacaggttt ttagaggatt tttagaagga aaggtaacct ttgctccgac atataagtat
     2461 gacttgtttt ctgacgacta tgacaccagt gaaaagtgcc gcacccctgc ctggacagac
     2521 cgtgtccttt ggagaaggag gaaatggcct tttgatagat cagctgaaga tctagatctt
     2581 ctaaatgcta gttttcaaga tgaaagcaaa attctgtaca cgtggactcc aggcactttg
     2641 ctgcactatg gaagagctga gctgaagact tctgaccaca ggcctgtcgt tgccctgatt
     2701 gatatagata tatttgaagt tgaagctgaa gagaggcaaa acatttataa agaagtaatt
     2761 gcagttcagg gtccaccaga tggtacagta ttggtctcaa tcaaaagttc tttaccagaa
     2821 aataattttt ttgatgatgc cttgattgat gagcttctgc agcagtttgc aagttttggt
     2881 gaagttatac ttataagatt tgtagaagat aaaatgtggg ttacattttt ggagggaagc
     2941 tctgccttga atgttctgag cctaaatggt aaagagttat tgaatcggac tataactatt
     3001 gctttaaaaa gtccagactg gatcaaaaat ttggaagaag aaatgagttt agagaaaatt
     3061 agcattgcat tgccatcatc aacaagctct accctgcttg gtgaagatgc agaggttgca
     3121 gcagattttg atatggaagg tgatgttgat gactatagtg ctgaagtgga ggaacttctt
     3181 cctcagcatc tccagccatc ttcaagttcc ggccttggta cttcccccag ctcttcaccc
     3241 cgaactagtc cctgccagtc acctacaata tcagagggtc ctgtaccttc ccttcccatc
     3301 agaccaagcc gagcaccgtc aagaactcct gggcctccca gtgcacagag ttctcctatt
     3361 gacgcgcagc cagcaacgcc gctgccgcag aaagaccccg cccagccctt ggagcccaag
     3421 cggccgccgc cgccccgccc ggtcgcccct cccacacgcc cggctccccc acagagacct
     3481 cctccgcctt cagcacccaa aagccctgga acaacaagga aagataatat aggacgcagt
     3541 cagccttcac ctcaagcagg acttgcaggc ccaggacctg ctggatacag tacagccaga
     3601 ccgacgattc ctcctcgtgc tggagttatc agtgccccac agagccacgc gcgggcatct
     3661 gctggaagac tgactcctga aagccaaagc aaaacatcag aaacgtcgaa aggttcaact
     3721 ttccttcctg aaccactgaa gcctcaggct gcttttcctc cgcagtcttc tttgcccccg
     3781 cctgctcaaa ggttgcaaga gcctcttgtc cctgtggcag cacctatgcc tcagtctggc
     3841 ccccagccaa atttggaaac cccaccacaa ccaccacctc gaagcaggtc atcccatagc
     3901 ttgccttcag aagcttcctc acaaccgcaa gtaaaaacaa atggaatctc tgatggcaaa
     3961 agagaatcac cattaaagat tgacccattt gaagatctgt catttaatct gcttgctgta
     4021 tcaaaggctc agctatctgt tcaaacgtca cctgttccca ccccagaccc aaagaggttg
     4081 attcagttgc cttctgcaac gcaaagtaat gttttgagtt ctgtaagttg catgccaaca
     4141 atgcctccaa ttccagctcg gagtcaatcc caggaaaata tgcgaagttc tccaaaccca
     4201 tttattactg gcttgaccag gacaaatcct ttcagtgaca ggactgctgc tcctggaaac
     4261 ccatttagag ccaagtctga agaatcagag gcaacttcat ggttctccaa agaagagccc
     4321 gttactatca gtcctttccc ttctctgcag cctcttggtc ataacaaaag cagggcttca
     4381 tcttcacttg atggctttaa ggacagtttt gatctacagg gccagtctac attaaaaatt
     4441 agcaacccga aaggatgggt aaccttcgag gaagaagagg attttggtgt gaaagggaag
     4501 tcaaagtcag cttgttcaga cttactgggt aatcagccaa gttcattttc tggctccaac
     4561 ctgacattga atgatgactg gaataaaggt acaaatgtct ccttctgtgt gttgccgtca
     4621 agaagacctc ctccacctcc tgtccctctg ctcccgcccg gcaccagccc tccagtagat
     4681 cctttcacga ccttggcctc taaggcttca cccacactgg actttacaga aagataacgc
     4741 catgcaatag aaaacagtgg gtacttgctt ttggcaggat agagctaaga gaattgggca
     4801 ttagtatttc attatgtgca ataagtcatt gtaagtgcac tgatatcttc acaaaacacc
     4861 actatttgat gtgtacagag ttggactatg tgtatattgg aaataaggaa aaacccttct
     4921 cattgttaac tggagttttg atgtatttct ctttggatga ataggagaca gtagtagcca
     4981 taaaaagtac ttatacttta gaaaacagtc cttattcaga aacttttcgg tcagtcttct
     5041 gaagaatctc aaaaagccca cccaactttc agctgacatt tccaccagcc ctctcatact
     5101 tgttaacaat tggtatcttt gagtatttac caaagagctg ccaaggttac agtgaacaga
     5161 gttttgaaag gcattgcttt aaaggaaaaa agtataggta tgtgtacata tataatacat
     5221 acaaacacat gtacttctgt atacatttac atatttttac aattcatact ttaatttcta
     5281 ggctataact cagaccaaat tatacctaaa agttccaaca aagtcccttt ttcaatatca
     5341 cattaccaaa aagatggctg caaatgtaat ttggaccttt cattaatttt gttttcaaaa
     5401 ctagaataat ctcaccacag aatcagaatt ttctaccgtt ccacacccaa ccccttcaaa
     5461 tacacacaac cttgttactt ttcactccag caccttcata cgcttttctc caggaggagg
     5521 ttcttgcagc tggaaacagc ctattttgtg gtcactgtca agtggatgga tattctagcg
     5581 ctcccaaaaa agcactatgg ccttatatgc agggaaggca cataccacca agttcaatga
     5641 gaaatattag agctaaccgt actctcttct ctgcgtacgt tcgagtatac gttgcccata
     5701 tccctcccat attttctttt tgctgctttt gctctggaac tttgctttta gcagggaaag
     5761 cagctgtccc ctgagtgctt tgaattggga atatacccag tgtgtgttct cccccctctt
     5821 acgaggctac ataacacatc tatgatgctg ctttaagttt ttagaggcta tacctcaaag
     5881 tagctgcgga ttttgtctcc tgcactgcca atatgcaact gatcccgctt ttattaattt
     5941 tttgaagaag tacacagaat ttttacagaa tgtagtattt tgatatcatt aagtaaacca
     6001 atcagaaaac tccttgagca atagttgttt ctttgtcagt ttcagttaca atcatcttta
     6061 cccattaaga cttacattaa cattcctttt atataaagag ttgtatatgt ccacctaaat
     6121 tcctatgtcc acacttaacc tttaaagatg tacattgagg gaatatcaaa aaatagcgtt
     6181 catggctacg aatatgtaga atgttaaaag cacagcaaac tgcactgcac ttataaagca
     6241 aatctattag aaaaaaagca tttttctaaa tgctcaaatg ttatcaaaat actatattta
     6301 tagaagtaat cttctctgtt aacagccaag atttgctgtt agaaataact cttgtgagtt
     6361 ttatattgtg ctttttggag gttctaatca tttcagcagt agcgtcttaa acagcagtat
     6421 tactataagc agttgcttca aaatgtgaat taacttgttg aaactgtggc tttaacatcc
     6481 atgtgactag tgtatatggt atttgctctc cattagcaaa ataattcatt gttaggtaaa
     6541 cttcactagt gcaaattgca gatctgtgag caatgtttcc tattgaatat aaactactgt
     6601 ctaaaatata catatcagca gcccagcctt tatcaggaaa attatacttg gcaagttgct
     6661 gaaaatgcac aaagttatga aagttaaagg tatgctgcaa ataactagcc attattctat
     6721 gtattattaa atatttacta gttctgttaa aagcagagca gaagttagac actaaggatc
     6781 tctttgtgaa ctctgtgttc tctatattag attgctgttt atatgtaaga attttattgc
     6841 ttatgtggca tacaatattt ataactataa actttataga agtacagtat taaagtcagt
     6901 ggtacacaga cattctgtac atatcctgtg aaacgtgctg tcatatgaaa taaatatatc
     6961 tgtctttacc atg
//
