LOCUS       NM_001136233            5860 bp    mRNA    linear   PRI 05-OCT-2024
DEFINITION  Homo sapiens SUPT20H like 2 (SUPT20HL2), mRNA.
ACCESSION   NM_001136233 XR_041479 XR_041480 XR_041481
VERSION     NM_001136233.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 5860)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC096509.9.
            
            On Jan 21, 2021 this sequence version replaced NM_001136233.2.
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            MANE Ensembl match               :: ENST00000486479.3/
                                                ENSP00000503941.1
            RefSeq Select criteria           :: based on single protein-coding
                                                transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5860              AC096509.9         32800-38659
FEATURES             Location/Qualifiers
     source          1..5860
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="X"
                     /map="Xp22.11"
     gene            1..5860
                     /gene="SUPT20HL2"
                     /gene_synonym="FAM48B1; FAM48B2"
                     /note="SUPT20H like 2"
                     /db_xref="GeneID:170067"
                     /db_xref="HGNC:HGNC:31797"
     exon            1..5860
                     /gene="SUPT20HL2"
                     /gene_synonym="FAM48B1; FAM48B2"
                     /inference="alignment:Splign:2.1.0"
     CDS             755..3208
                     /gene="SUPT20HL2"
                     /gene_synonym="FAM48B1; FAM48B2"
                     /note="family with sequence similarity 48, member B1;
                     family with sequence similarity 48, member B2; suppressor
                     of Ty 20 homolog-like 2; SPT20 homolog, SAGA complex
                     component-like 2; putative protein FAM48B2"
                     /codon_start=1
                     /product="putative transcription factor SPT20 homolog-like
                     2"
                     /protein_id="NP_001129705.3"
                     /db_xref="CCDS:CCDS94580.1"
                     /db_xref="GeneID:170067"
                     /db_xref="HGNC:HGNC:31797"
                     /translation="MDRDLEQALDRTENITEIAQQRRPRRRYSPRAGKTLQEKLYDIY
                     VEECGKEPEDPQELRSNVNLLEKLVRRESLPCLLVNLYPGNQGYSVMLQREDGSFAET
                     IRLPYEERALLDYLDAEELPPALGDVLDKASVNIFHSGCVIVEVRDYRQSSNMQPPGY
                     QSRHILLRPTMQTLAPEVKTMTRDGEKWSQEDKFPLESQLILATAEPLCLDPSVAVAC
                     TANRLLYNKQKMNTDPMEQCLQRYSWPSVKPQQEQSDCPPPPELRVSTSGQKEERKVG
                     QPCELNITKAGSCVDTWKGRPCDLAVPSEVDVEKLAKGYQSVTAADPQLPVWPAQEVE
                     DPFRHAWEAGCQAWDTKPNIMQSFNDPLLCGKIRPRKKARQKSQKSPWQPFPDDHSAC
                     LRPGSETDAGRAVSQAQESVQSKVKGPGKMSHSSSGPASVSQLSSWKTPEQPDPVWVQ
                     SSVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFPAAAPAVAAAAPAPA
                     PAPAAAPALAAAAVAAAAGGAAPSHSQKPSVPLIKASRRRPAAGRPTRFVKIAPAIQV
                     RTGSTGLKATNVEGPVRGAQVLGCSFKPVQAPGSGAPAPAGISGSGLQSSGGPLPDAR
                     PGAVQASSPAPLQFFLNTPEGLRPLTLQVPQGWAVLTGPQQQSHQLVSLQQLQQPTAA
                     HPPQPGPQGSTLGLSTQGQAFPAQQLLNVNLTGAGSGLQPQPQAAVLSLLGSAQVPQQ
                     GVQLPFVLGQQPQPLLLLQPQPQPQQIQLQTQPLRVLQQPVFLATGAVQIVQPHPGVQ
                     AGSQLVGQRKGGKPTPPAP"
     regulatory      5832..5837
                     /regulatory_class="polyA_signal_sequence"
                     /gene="SUPT20HL2"
                     /gene_synonym="FAM48B1; FAM48B2"
                     /note="hexamer: AATAAA"
     polyA_site      5860
                     /gene="SUPT20HL2"
                     /gene_synonym="FAM48B1; FAM48B2"
                     /note="major polyA site"
ORIGIN      
        1 atttccggtg cagcactcag agacgcgaag cccaggccac gacaatcacc cctcaggtac
       61 cgatgttttc agaaaccctc aaacagattg ggtagcgctt ccctgggggc aggtttctgg
      121 gcaggtgccc agacgcgcct agaagctgac cccggccctc ccgctcactt ccgttccagg
      181 ccgcagagac gcgaagtccg accacgacga cgacccctca ggtaccgatg ttttcagaaa
      241 ccctcaaaca gattgggtag cgcttccctg ggggcaggtt tctgggcagg tgcccagacg
      301 cgcctagaag ctgaccacgg ccctcccgct cacttctgtt ccaggccgca gagacgtgaa
      361 gcccgggcca cgacgacgac ccctcaggta ccgatgtttt cagaaaccct caaacagatt
      421 gggtagcgct tccctggggg caggtttctg ggcaggtgcc cagacgcgcc tagaagctga
      481 ccccggccct cccgctcact tctgttccag gccgcagaga cgtgaagccc ggccacgacg
      541 acgacccctc aggtacccat gttttcagaa accctcaaac agattgggta gcgcttccct
      601 gggggcgggt ttctgggcag gtgcccgtgt tgaactcagt gtggacttgc ggcgtcttgc
      661 gggcctgtag attaatatga cagccgtgat tccaccctgc ttcaccaacg cacatgcgtt
      721 ttctctcctc ttaggggccc tgttttctgt tacaatggat cgagatttag aacaggctct
      781 ggatcgcaca gagaatatca ctgaaattgc ccaacagaga cgtcctagaa ggagatactc
      841 acctagggcg ggaaaaactc tgcaggaaaa actttatgac atttatgttg aagaatgtgg
      901 aaaagagcct gaggatcctc aggaattgag aagcaatgta aacttgttag aaaagcttgt
      961 taggagagag tccttgccat gtttactggt caatctatac ccaggcaatc aggggtattc
     1021 tgtgatgctc cagagagaag atgggtcctt tgcagagacc attcggctgc cttatgaaga
     1081 aagggcattg ctggactact tggatgcaga agaattaccc cctgctttgg gtgatgtcct
     1141 ggataaagct tcggttaaca tttttcatag tgggtgtgtc atagtagaag ttcgtgacta
     1201 caggcagtcc agtaatatgc aacctcctgg ttaccaaagc aggcatattc ttctacgtcc
     1261 aaccatgcag actttagccc ctgaggtgaa gacgatgaca agagatggcg agaaatggag
     1321 ccaggaagac aaatttcctc ttgagagtca actgatctta gcgacagctg aaccactgtg
     1381 tcttgatcct tctgtagcag ttgcctgcac tgcaaacagg ctgctgtaca acaagcaaaa
     1441 gatgaatacc gacccgatgg aacagtgcct ccagaggtat tcgtggccct ctgtaaagcc
     1501 acagcaggag cagtctgact gtccacctcc tcctgagctg agagtgtcga cttctggcca
     1561 aaaagaagaa agaaaagtag gtcagccttg tgagctgaac attactaaag cgggaagttg
     1621 tgtagacacg tggaaaggca gaccctgtga tttggccgtg ccttcagaag tggatgtgga
     1681 gaaacttgct aaagggtatc agtccgtcac agctgctgac ccacagctcc cagtctggcc
     1741 agcccaggag gtagaagacc ctttcagaca tgcatgggaa gctggctgtc aggcctggga
     1801 caccaagcca aacatcatgc agtcgtttaa tgatccgctt ctctgtggta aaatacggcc
     1861 acgtaaaaaa gccaggcaga agagccagaa gtctccctgg cagcccttcc cagatgacca
     1921 ttcagcttgt ctcaggcctg ggtcagagac tgatgctggg agggcagtga gtcaggccca
     1981 ggaatcggtg cagagcaaag tcaaaggtcc aggcaagatg tcacacagct ccagtggccc
     2041 agccagtgtc agtcagctct cttcatggaa aacaccagaa cagcctgatc ctgtgtgggt
     2101 ccagtcttca gtatccggga agggagagaa acatccacct ccccgcaccc aacttccctc
     2161 aagctcagga aagatttcct caggtaacag ttttccccca caacaggcag gcagccctct
     2221 taagcgtcca tttcctgctg ctgctcctgc tgtagctgct gctgctcctg ctcctgctcc
     2281 tgctcctgct gctgctcctg ctttagctgc tgctgctgtg gcggcggcgg ccggtggggc
     2341 ggcaccaagc cattctcaga agccctctgt gcctcttatt aaagctagca ggcgccgtcc
     2401 agctgccggg cgccccacca gattcgtaaa aatagcccca gccattcagg tccggacagg
     2461 ctccactggc ctaaaggcca ccaacgtgga gggcccagtc cggggagccc aggttttggg
     2521 gtgcagtttc aagcctgtgc aggcccctgg ctcgggtgcc cccgctcctg caggaatcag
     2581 tggcagtggc cttcagtcct caggaggtcc actaccagat gcaaggcccg gtgcagtgca
     2641 ggcatcttct ccagcacccc ttcagttttt cctaaatact ccggaaggtc tcaggcctct
     2701 gacactccag gttccgcagg gctgggcggt tctgaccggc ccgcagcagc agtcccatca
     2761 gctggtttcc ctgcagcagc tccagcagcc cacagctgct caccctcctc agccagggcc
     2821 acagggttcc acactaggtt tgagcacgca agggcaggcc ttccctgctc agcaacttct
     2881 taatgtgaac ctcactggag caggtagtgg tctgcagccc cagccccagg ctgctgtgtt
     2941 gagtctgctt ggctctgccc aggttcctca gcagggtgtc cagctcccct ttgtcttggg
     3001 gcagcagcca cagccgctgc tgctgctgca gccacaacca cagccacagc agatccagct
     3061 ccagacacag cctttgagag tcctgcagca gccagtgttt ttggcaacag gcgctgttca
     3121 gatagtgcag ccacatccag gtgtgcaagc agggagccag ttggtaggtc agaggaaggg
     3181 aggcaagcca acccctccag ctccctgagg cttgtggtag tttgttctct tttaaaagca
     3241 tgggagcact gacccacatg aattcccagt ttttacttga gttttgtttt ttttctcatg
     3301 ttttggtatt ttacatttta aaatacacac tttacacaga agcacaatcc accgattttt
     3361 atttagaaac aggaagtgat ttcctaaagg ggcattgttt tgcttaagtt actccttttg
     3421 ttgtcattgc tgttgatata attgttttta atatagtatt ttaaagtgtc caaatcctaa
     3481 ccaggttgag tttaaacttg tgaagcatat ttctctagag ccataaaatg gcagtaccaa
     3541 caatgttaag ttaatatttt aacaagattt taattttaag ttaatatttt aacaagaaga
     3601 gcgcaattta aaatttttaa tggtgataaa aacatataat ctaaaatgga ccaccttcac
     3661 tattttaagt gcccagtgca atagtattaa gtccaccccc acggttgtgc cgcagatctc
     3721 aagaccatct tgcaacactg aaactcatgc ccattgaaca ccagctcccc attctccctc
     3781 atccagtccc tggcagccat tgttctactt tctttctcta tgagttgact accctggcca
     3841 tttcatggaa gtggaatcat atggcatttg tcacttggtg agtggcttat ctcacttggc
     3901 ataatgtcct catgatttat ccctgctgtc tcatgtgatg tgaaggtcat tgctttttaa
     3961 aaatggtctc actgtacata atatatatga aagtgaccta taaactctga gaaacctctt
     4021 tcagaagaaa gagtgtaatc gtattcacat taataggttt atgcacaata tatggaatgg
     4081 aattattaca cattcatttt gaaaaatgaa aaaaaagtac agtacagtga tgcttgtcac
     4141 actgcgattg aatacatggg agacctctaa agctgtggaa tggaattagt ggcagatttg
     4201 cttgtgtgac agtcccctgc cctttcaaag gccctgtctg cacctagtgc tccacagagc
     4261 aaggctttct cactggcttt gaaaaggctc tttttggatg tttttttttt tttttttttt
     4321 tttctttttt tttttatttt tattattttt ttcttttttt ttttaatttt tttttttaat
     4381 tttttttttt ttattatact ctaagtttta gggtacatgt gcacattgtg caggttagtt
     4441 acatatgtat acatgtgcca tgctggtgcg ctgcacccac taacgtgtca tctagcatta
     4501 ggtatatctc ccaatgctat ccctcccccc tcccccgacc ccaccacagt ccctttttgg
     4561 atgttttgtg tgctctcttt ataaaatcat ttacattttt tgtaggttgt ttgcaagaaa
     4621 catttagtga aacatttgaa aatccatttt attggtttgc ttttcaaata tctgtagcct
     4681 tgtttcttaa gtagaacccc cgtctttttc tttgtctttt tctctttgtt gatgcatcat
     4741 catcagttgt tcagctgttt ctgctccctc attttttccc ttgttccagt gagactcaaa
     4801 gaaccatgaa cttttgtgcc cctttgtctt ccctttcttt tttctttttt aacaactaag
     4861 gggtaatcac agaacaacca accattgtaa agtacaattg taaagtggca tttagtacat
     4921 tcatgatgtt gtacaactac cccttctgtt tccaaaacat tttcatcacc caccaagcaa
     4981 tctctgtacc cattaagcac tagcgtgaca tcttcacact cccagcctct ggcaaccacc
     5041 aatttgcttt ctgtttctat ggatttacct aaatatttcc tgtaaatgta gtcatacagt
     5101 atgtgatctt ttgtgtctgg cctctttcac tcggcataat gtttttgaag ttcttccatg
     5161 tcgtaaaatg tattgctaat tcattccttt ctgtggttcg ataacattcc attgtttgta
     5221 tatagcacat ttttgtttat tctgatgatg gacacttggg ttgtttctac cttttgggcg
     5281 ctgtgcatag agctgctgtc aactttcatg tacaagcatc tgttctagca cctcatattt
     5341 tgctctgtta aaaccttgaa gggtacccta tgtaatatta gtttttctag gtacacatgt
     5401 acatttctct gttttttgcc ttaacaaaat agaaggagat ttgatctggc attccaaaag
     5461 acatcagtaa agagacaggt atccagtgaa tcttacttga tgaacccttt tactaatgtg
     5521 ctaccgatgc tgttaaagat ttgaccaact tcaagcaaac acgtcgaatt tcctaagtga
     5581 caccaagtcc atcagagcag cctggacata attgggaatg gtgcctgcac ttttaagagg
     5641 cgaacgagtg caatgaccag ttgtagagaa gagtttatgc atggccttcg gagctaagca
     5701 gtgacctgaa ttcagtatgt caccaaattt ggtgtgcttt ctcctttgcc tgctgcttct
     5761 ttcaagtagg acatggagac aacagccaaa tttgtgcttc agtgatgtga ccttcccttc
     5821 ccaggcaggc aaataaattt agttttgttt ctgattatca
//
