LOCUS       XM_047444261            6010 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens SSX family member 2 interacting protein
            (SSX2IP), transcript variant X25, mRNA.
ACCESSION   XM_047444261
VERSION     XM_047444261.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000001.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6010
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            1..6010
                     /gene="SSX2IP"
                     /gene_synonym="ADIP; hMsd1"
                     /note="SSX family member 2 interacting protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 28 ESTs, 782 long SRA reads, and 97% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:117178"
                     /db_xref="HGNC:HGNC:16509"
                     /db_xref="MIM:608690"
     CDS             605..2125
                     /gene="SSX2IP"
                     /gene_synonym="ADIP; hMsd1"
                     /codon_start=1
                     /product="afadin- and alpha-actinin-binding protein
                     isoform X7"
                     /protein_id="XP_047300217.1"
                     /db_xref="GeneID:117178"
                     /db_xref="HGNC:HGNC:16509"
                     /db_xref="MIM:608690"
                     /translation="MGDWMTVTDPGLSSESKTISQYTSETKMSPSSLYSQQVLCSSIP
                     LSKNVHSFFSAFCTEDNIEQSISYLDQELTTFGFPSLYEESKGKETKRELNIVAVLNC
                     MNELLVLQRKNLLAQENVETQNLKLGSDMDHLQSCYSKLKEQLETSRREMIGLQERDR
                     QLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMN
                     KKDKKIAMDILNYVGRADGKRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAE
                     LKKVLQQMKKEMISLLSPQKKKPRERVDDSTGTVISDVEEDAGELSRESMWDLSCETV
                     REQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLELEIQQ
                     CKEMIKTQQQLLQQQLATAYDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFERER
                     RSFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGIQSMY"
ORIGIN      
        1 aggcgctgcg aggcgctgct ggccctcggg ctgcgggagc cgggctagga cgccgagcgg
       61 tgactccccg ccgctcccgg gggccgtgac ggtgagcagc agcgcctcgc gtcggggatt
      121 gtgacgcgcc ccgccaggga ggggcgggcg ggggtgggcg ccggcaaggg gcgggcgcgc
      181 gcggaggtga gagccggcac ctggctcagc gccccgttgt tcggcgggag gctccgcgcg
      241 gctgttgggg ccgttgcagg gtgcgggcga gcgtcgaccc gggccgctcc tggaggagga
      301 ggtgggaggt tggattgttc attaagccag ggggagagtc cacttttgcc aggtctgcca
      361 gtactccatg gctttgccct tgatgatagt tggggaaaag tctggcctct gtatttctgt
      421 tccctgtctt cctgatgggc cagattccca cagacattcc ctcagatgag gaaagtgagg
      481 cccaaagaag atttatgttc aggaccattt agtctgagat gcctacatag aagagtgaca
      541 gcagctagac taaatgttta actgctgaac tagttcctca ggtatcctgg ctctagagat
      601 tgctatggga gattggatga ctgttacaga tccaggtctg tcttcagaaa gcaaaactat
      661 ctctcaatat acctcagaaa caaagatgtc tccatcaagt ttatactcac agcaagtgct
      721 atgttcttca atacctttat cgaaaaatgt gcacagtttt ttcagtgcct tctgcacaga
      781 agataatatt gaacagagta tctcatatct tgatcaggaa ttgactactt ttggttttcc
      841 ttcattatat gaagaatcca aaggtaaaga gacaaagaga gagttaaata tagtagctgt
      901 actaaattgt atgaatgagc tgcttgtgct tcagcggaag aaccttctag ctcaggaaaa
      961 tgtggagaca cagaatttga agctgggaag tgatatggac catctacaga gctgctactc
     1021 aaaacttaag gaacaactgg aaacctccag gagggaaatg attgggcttc aggaaagaga
     1081 cagacagtta caatgtaaga acaggaattt gcatcagcta ctaaagaatg agaaagatga
     1141 ggtgcaaaaa ttacaaaata tcattgcaag tcgagctact cagtataatc atgatatgaa
     1201 gagaaaagag cgtgaatata ataaactgaa ggaacgtcta catcaacttg ttatgaacaa
     1261 gaaagataag aaaatagcta tggacatttt gaattatgtc gggagagctg atggaaaaag
     1321 aggctcctgg aggactggta aaactgaagc caggaatgaa gatgaaatgt ataaaattct
     1381 cttgaatgat tatgaatatc gtcagaaaca aatcctaatg gaaaatgcag aacttaagaa
     1441 ggttcttcaa caaatgaaaa aggaaatgat ttctcttctt tctccccaaa agaagaaacc
     1501 tagagaaaga gtagatgata gtacaggaac tgttatttcc gatgttgaag aagatgccgg
     1561 ggaactaagc agagagagta tgtgggacct ttcctgtgaa actgtgagag agcagcttac
     1621 aaacagcatc agaaaacagt ggagaatttt gaaaagtcat gtagaaaagc ttgataacca
     1681 agtttcaaag gtacacctgg aaggttttaa tgatgaagat gtaatctcac gacaagacca
     1741 tgaacaagaa actgaaaaac tcgagttaga aattcagcag tgtaaagaaa tgattaaaac
     1801 tcagcaacag cttttacagc agcagctcgc tactgcatat gatgatgata ccacttcact
     1861 attacgagac tgttatttgt tggaagaaaa ggaacgtctc aaagaagaat ggtccctttt
     1921 taaagagcag aaaaagaatt ttgagaggga gagacgaagc tttacagaag ccgctattcg
     1981 cctgggattg gagagaaagg catttgaaga agaaagagcc agttggttaa agcagcagtt
     2041 tctaaatatg actacctttg accaccagaa ctcagaaaat gtgaaacttt tcagtgcctt
     2101 ctcaggaatt caatcaatgt actgaatata actgctgaag aaattaaacc aaatcaggtt
     2161 ggaggagaat gtacaaatca aaaatggagt gtggcatcaa gacctggatc acaggaaggt
     2221 tgctatagtg gatgctcctt gagctacaca aattctcatg tagaaaaaga tgacttacct
     2281 tagacatgtg gactggaatt tttttcatta atgtgttcat caagtttcac atctaagttg
     2341 aaacagggtg tgtcataaag tcagttatct ctaataactt aagatggtct gagttgtttg
     2401 tttggacttc cctgtcttcc cccaaagagt tgaaatctta aatctattta aaaggatata
     2461 aaagctttgg atatgtattt ttagtaacag aagcatctgg ttctgtgaat aaaggaatgt
     2521 atagatgttt ggatggaaac aaaagcacta gactgagttt cctcttatag gtattaaaaa
     2581 tagcactttt aggaaactga ttattgtaaa tgtttaattt tgtctcaaat atagttggca
     2641 ttggaagttt agcctttact tgaatgtata ctgtagattt ttaacaaagc gagttctata
     2701 tttattatgt ttagtgtggt ttgaaattac ctctttcata tgttttaaat aaagtgaaat
     2761 ttatgtatgt tttgtacata gatacacatg attatgttaa gaggctttaa gatttaaaag
     2821 tttcacacaa ccataagtat agtatttcat gccagtaaaa tttttttagt ggtattctgt
     2881 ttacagatgt attaggacca ttgatgcatt acatttaaga attctcttta atacatctgg
     2941 gcaataaata ttgaaaggta ttccatgaag ctgagttctt tagataatca acactactaa
     3001 cattacattt ttgagatttt tatgacatta gatttttatt ttgtatatgt agaatattat
     3061 aatttttaaa aggactattg atgatagaag aataggggca agacgacaaa agtacctttg
     3121 aataaaacaa tttaagaaat tggtttaaga tattggatga tagaagatat ttaagatatc
     3181 tagatggtga tattttcctt acaagatggg taccagtata gtaatatctg tatactaact
     3241 agggctttgt attgtcaata attttttaat aattttttaa tgaggtattt accactgaag
     3301 aaatatgata atataaaacc atcaaatttt ataattgaga tgatactctg gaaaaacatg
     3361 tcatttcatt ttcagaaaac tcttaagctc tcttcagtct ctgtaatgtt tctgattgca
     3421 tgtttcttca tgaaaagtat gttgttgttt tgatagtaat aataataaat gtaggctcag
     3481 ctctttccca ggattttcat caaaaagctt taagtgccta accctgcttg tctctgtaca
     3541 tagaagcctg cacagatcca acccttgcta ggtatcatag tttaggccca tttaccttcc
     3601 cctgtactgg cagttcagcc gcttacatgc actcaccctg tttgtggcta ttttaaattc
     3661 atattattaa aaaacaaaaa aaacccacct atttgtgttg tccattcact atacgtaact
     3721 atgtaactct ttggagttgc atagcagcag ccattttttc agggctgata ggatatcatt
     3781 aagagtgtct tatgagacat tagtggatat actcatagta accatattta tagttttaaa
     3841 gagctagctc ttgagcatta gtcactacct tcagcttgat gcatggtcac ttctttacta
     3901 tttaaaatac tacacattgt acaaaatatc gaagacacta ccatatgcta aaggaagaaa
     3961 tctagctggg atataggatt tttgttgttt ttgtttttgt ttgttttgct atttagcaat
     4021 aacatggtca aaaaggcaat cagaaatttt aaatacagtt aatggataca tttggcaaca
     4081 attttccccc gagggttttc catggtgtac tttgcaagaa ataagcactc taatttttaa
     4141 agtaaatctc ttattttagc aaatattata tttcatgaca atggagttct agaaagcagc
     4201 atctgttttt tgttgcgtgt ttccatttta aagtgagttg agttctcaaa ttggaaagaa
     4261 agattccttg agacgtactt ttaaaatcta aagtgtgaaa gaaacagcag agtaaaagcc
     4321 agactcattg caccttcaat gtctgcatag atccagaagt tgtacatttt acctaacaac
     4381 atcacttttg ttgaacattc caactccaga atgatcccca atcaccctaa tctcagaatg
     4441 ctggaatgat gtctgttgga aaacccagga ctccacacac aaaactcctg ggattttgtt
     4501 tcccatctct ttctaggtgt ttgcaatgta caaataatac agctgtgcta atctcacatt
     4561 tagccatgat agatgatggt tctagagtgt acttccattt gtaagtcctc ctgataagtg
     4621 ctttcttgtt tatcactatg taaatctgaa atattttgta cttcatttgt ttttatccat
     4681 tctgaatttt caaagcataa aaatgtcaaa gaaaaattga gataaacatt ttgttcacca
     4741 ttaaatgttt gcatctgcag tctatgatga gaaacaatga aattatgact aaaatttaac
     4801 aaatagtatt ttcttataga agcaatgtat taaatgatta gatacacagg acagttcaca
     4861 gcaaattgtt tacttacatg gcataattga aatactgtta tttgtaaaga gttctatact
     4921 gcctacctta gctaaccaga attgttcata gacttgtgat aatatggtgt tatgggaaaa
     4981 cacattttgt gcgcatgatg aagagagcac cgtgaatcta gtcttgactg cccctggtgg
     5041 aacatttgaa agcccttggg actccaggag agaggttttt gcagcatgta tgctaaattt
     5101 gtgagttagc aagaccctgc tgtgattact atgttgtaca gatcttcaaa gtatattgcc
     5161 taatatgagt catgttattt ctagattgaa tttaaagtaa gtatggatta tggaagtcta
     5221 gtaaatatac ttttccctat ttttgtcctt tttcagtctt ttggtaagca tttattaagt
     5281 acctgctgta tgtcaaggct tactactgct ttccaatcct tggtgatatg aagacagata
     5341 agcacgctgc ctgctattag gaatctgagc tgagtggaag gccaactatt aaacctacat
     5401 tgtaataaac aatggtggat gctacggaca cattcagtct gttcataaaa catggactga
     5461 tgggtctgct ccaggccaca tttgtttttt aacagtaacg tggctaggct tccatttata
     5521 agtcttagca ttatttcctt tgtgaagtac tatgtaacag atgattgttt gctagatttt
     5581 gttttctaca atcaaaatgt tgacctgcaa agcagtgtag gattttctct cctcaagagc
     5641 gtgtattatt atctagtaga aaaagcattc ccaaagactt ggtccatgca gataaggata
     5701 atgaaattgc tcactctaat cctttttcta aatacagtgt ttttcaagct ggatgtaaat
     5761 tagagtgggt ggatattgat taaattattt gatttatatg aaatcaaatg actggttgag
     5821 gtttttttga acatttacaa ataatggatt cctgagagct caggaagtac tgtaatgtca
     5881 gtgacatatg aagctcctga taaagatcca cctcattcat atatttgagc ttcagaaata
     5941 catgtaccta gtataatgct taacagcaca taatatttgt tgatgagaaa tacactgatg
     6001 aaacaacaca
//
