LOCUS       XM_024453015            5799 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens SSX family member 2 interacting protein
            (SSX2IP), transcript variant X10, mRNA.
ACCESSION   XM_024453015
VERSION     XM_024453015.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000001.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_024453015.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5799
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            1..5799
                     /gene="SSX2IP"
                     /gene_synonym="ADIP; hMsd1"
                     /note="SSX family member 2 interacting protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 30 ESTs, 1190 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:117178"
                     /db_xref="HGNC:HGNC:16509"
                     /db_xref="MIM:608690"
     CDS             231..2072
                     /gene="SSX2IP"
                     /gene_synonym="ADIP; hMsd1"
                     /codon_start=1
                     /product="afadin- and alpha-actinin-binding protein
                     isoform X2"
                     /protein_id="XP_024308783.1"
                     /db_xref="GeneID:117178"
                     /db_xref="HGNC:HGNC:16509"
                     /db_xref="MIM:608690"
                     /translation="MGDWMTVTDPGLSSESKTISQYTSETKMSPSSLYSQQVLCSSIP
                     LSKNVHSFFSAFCTEDNIEQSISYLDQELTTFGFPSLYEESKGKETKRELNIVAVLNC
                     MNELLVLQRKNLLAQENVETQNLKLGSDMDHLQSCYSKLKEQLETSRREMIGLQERDR
                     QLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMN
                     KKDKKIAMDILNYVGRADGKRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAE
                     LKKVLQQMKKEMISLLSPQKKKPRERVDDSTGTVISDVEEDAGELSRESMWDLSCETV
                     REQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLELEIQQ
                     CKEMIKTQQQLLQQLATAYDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFERERR
                     SFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSSDWDNLI
                     VHSRQPQKKPHSVSNGSPVCMSKLTKSLPASPSTSDFCQTRSCISEHSSINVLNITAE
                     EIKPNQVGGECTNQKWSVASRPGSQEGCYSGCSLSYTNSHVEKDDLP"
ORIGIN      
        1 aggcgctgcg aggcgctgct ggccctcggg ctgcgggagc cgggctagga cgccgagcgg
       61 tgactccccg ccgctcccgg gggccgtgac gatgaggaaa gtgaggccca aagaagattt
      121 atgttcagga ccatttagtc tgagatgcct acatagaaga gtgacagcag ctagactaaa
      181 tgtttaactg ctgaactagt tcctcaggta tcctggctct agagattgct atgggagatt
      241 ggatgactgt tacagatcca ggtctgtctt cagaaagcaa aactatctct caatatacct
      301 cagaaacaaa gatgtctcca tcaagtttat actcacagca agtgctatgt tcttcaatac
      361 ctttatcgaa aaatgtgcac agttttttca gtgccttctg cacagaagat aatattgaac
      421 agagtatctc atatcttgat caggaattga ctacttttgg ttttccttca ttatatgaag
      481 aatccaaagg taaagagaca aagagagagt taaatatagt agctgtacta aattgtatga
      541 atgagctgct tgtgcttcag cggaagaacc ttctagctca ggaaaatgtg gagacacaga
      601 atttgaagct gggaagtgat atggaccatc tacagagctg ctactcaaaa cttaaggaac
      661 aactggaaac ctccaggagg gaaatgattg ggcttcagga aagagacaga cagttacaat
      721 gtaagaacag gaatttgcat cagctactaa agaatgagaa agatgaggtg caaaaattac
      781 aaaatatcat tgcaagtcga gctactcagt ataatcatga tatgaagaga aaagagcgtg
      841 aatataataa actgaaggaa cgtctacatc aacttgttat gaacaagaaa gataagaaaa
      901 tagctatgga cattttgaat tatgtcggga gagctgatgg aaaaagaggc tcctggagga
      961 ctggtaaaac tgaagccagg aatgaagatg aaatgtataa aattctcttg aatgattatg
     1021 aatatcgtca gaaacaaatc ctaatggaaa atgcagaact taagaaggtt cttcaacaaa
     1081 tgaaaaagga aatgatttct cttctttctc cccaaaagaa gaaacctaga gaaagagtag
     1141 atgatagtac aggaactgtt atttccgatg ttgaagaaga tgccggggaa ctaagcagag
     1201 agagtatgtg ggacctttcc tgtgaaactg tgagagagca gcttacaaac agcatcagaa
     1261 aacagtggag aattttgaaa agtcatgtag aaaagcttga taaccaagtt tcaaaggtac
     1321 acctggaagg ttttaatgat gaagatgtaa tctcacgaca agaccatgaa caagaaactg
     1381 aaaaactcga gttagaaatt cagcagtgta aagaaatgat taaaactcag caacagcttt
     1441 tacagcagct cgctactgca tatgatgatg ataccacttc actattacga gactgttatt
     1501 tgttggaaga aaaggaacgt ctcaaagaag aatggtccct ttttaaagag cagaaaaaga
     1561 attttgagag ggagagacga agctttacag aagccgctat tcgcctggga ttggagagaa
     1621 aggcatttga agaagaaaga gccagttggt taaagcagca gtttctaaat atgactacct
     1681 ttgaccacca gaactcagaa aatgtgaaac ttttcagtgc cttctcagga agttctgatt
     1741 gggacaatct tatagtgcac tcgaggcagc cgcaaaagaa gcctcacagt gtgtctaatg
     1801 ggtctccagt ttgcatgtct aaacttacta aatctcttcc tgcttcacct tccacttcag
     1861 acttttgcca gacacgttcc tgcatatctg aacatagttc aatcaatgta ctgaatataa
     1921 ctgctgaaga aattaaacca aatcaggttg gaggagaatg tacaaatcaa aaatggagtg
     1981 tggcatcaag acctggatca caggaaggtt gctatagtgg atgctccttg agctacacaa
     2041 attctcatgt agaaaaagat gacttacctt agacatgtgg actggaattt ttttcattaa
     2101 tgtgttcatc aagtttcaca tctaagttga aacagggtgt gtcataaagt cagttatctc
     2161 taataactta agatggtctg agttgtttgt ttggacttcc ctgtcttccc ccaaagagtt
     2221 gaaatcttaa atctatttaa aaggatataa aagctttgga tatgtatttt tagtaacaga
     2281 agcatctggt tctgtgaata aaggaatgta tagatgtttg gatggaaaca aaagcactag
     2341 actgagtttc ctcttatagg tattaaaaat agcactttta ggaaactgat tattgtaaat
     2401 gtttaatttt gtctcaaata tagttggcat tggaagttta gcctttactt gaatgtatac
     2461 tgtagatttt taacaaagcg agttctatat ttattatgtt tagtgtggtt tgaaattacc
     2521 tctttcatat gttttaaata aagtgaaatt tatgtatgtt ttgtacatag atacacatga
     2581 ttatgttaag aggctttaag atttaaaagt ttcacacaac cataagtata gtatttcatg
     2641 ccagtaaaat ttttttagtg gtattctgtt tacagatgta ttaggaccat tgatgcatta
     2701 catttaagaa ttctctttaa tacatctggg caataaatat tgaaaggtat tccatgaagc
     2761 tgagttcttt agataatcaa cactactaac attacatttt tgagattttt atgacattag
     2821 atttttattt tgtatatgta gaatattata atttttaaaa ggactattga tgatagaaga
     2881 ataggggcaa gacgacaaaa gtacctttga ataaaacaat ttaagaaatt ggtttaagat
     2941 attggatgat agaagatatt taagatatct agatggtgat attttcctta caagatgggt
     3001 accagtatag taatatctgt atactaacta gggctttgta ttgtcaataa ttttttaata
     3061 attttttaat gaggtattta ccactgaaga aatatgataa tataaaacca tcaaatttta
     3121 taattgagat gatactctgg aaaaacatgt catttcattt tcagaaaact cttaagctct
     3181 cttcagtctc tgtaatgttt ctgattgcat gtttcttcat gaaaagtatg ttgttgtttt
     3241 gatagtaata ataataaatg taggctcagc tctttcccag gattttcatc aaaaagcttt
     3301 aagtgcctaa ccctgcttgt ctctgtacat agaagcctgc acagatccaa cccttgctag
     3361 gtatcatagt ttaggcccat ttaccttccc ctgtactggc agttcagccg cttacatgca
     3421 ctcaccctgt ttgtggctat tttaaattca tattattaaa aaacaaaaaa aacccaccta
     3481 tttgtgttgt ccattcacta tacgtaacta tgtaactctt tggagttgca tagcagcagc
     3541 cattttttca gggctgatag gatatcatta agagtgtctt atgagacatt agtggatata
     3601 ctcatagtaa ccatatttat agttttaaag agctagctct tgagcattag tcactacctt
     3661 cagcttgatg catggtcact tctttactat ttaaaatact acacattgta caaaatatcg
     3721 aagacactac catatgctaa aggaagaaat ctagctggga tataggattt ttgttgtttt
     3781 tgtttttgtt tgttttgcta tttagcaata acatggtcaa aaaggcaatc agaaatttta
     3841 aatacagtta atggatacat ttggcaacaa ttttcccccg agggttttcc atggtgtact
     3901 ttgcaagaaa taagcactct aatttttaaa gtaaatctct tattttagca aatattatat
     3961 ttcatgacaa tggagttcta gaaagcagca tctgtttttt gttgcgtgtt tccattttaa
     4021 agtgagttga gttctcaaat tggaaagaaa gattccttga gacgtacttt taaaatctaa
     4081 agtgtgaaag aaacagcaga gtaaaagcca gactcattgc accttcaatg tctgcataga
     4141 tccagaagtt gtacatttta cctaacaaca tcacttttgt tgaacattcc aactccagaa
     4201 tgatccccaa tcaccctaat ctcagaatgc tggaatgatg tctgttggaa aacccaggac
     4261 tccacacaca aaactcctgg gattttgttt cccatctctt tctaggtgtt tgcaatgtac
     4321 aaataataca gctgtgctaa tctcacattt agccatgata gatgatggtt ctagagtgta
     4381 cttccatttg taagtcctcc tgataagtgc tttcttgttt atcactatgt aaatctgaaa
     4441 tattttgtac ttcatttgtt tttatccatt ctgaattttc aaagcataaa aatgtcaaag
     4501 aaaaattgag ataaacattt tgttcaccat taaatgtttg catctgcagt ctatgatgag
     4561 aaacaatgaa attatgacta aaatttaaca aatagtattt tcttatagaa gcaatgtatt
     4621 aaatgattag atacacagga cagttcacag caaattgttt acttacatgg cataattgaa
     4681 atactgttat ttgtaaagag ttctatactg cctaccttag ctaaccagaa ttgttcatag
     4741 acttgtgata atatggtgtt atgggaaaac acattttgtg cgcatgatga agagagcacc
     4801 gtgaatctag tcttgactgc ccctggtgga acatttgaaa gcccttggga ctccaggaga
     4861 gaggtttttg cagcatgtat gctaaatttg tgagttagca agaccctgct gtgattacta
     4921 tgttgtacag atcttcaaag tatattgcct aatatgagtc atgttatttc tagattgaat
     4981 ttaaagtaag tatggattat ggaagtctag taaatatact tttccctatt tttgtccttt
     5041 ttcagtcttt tggtaagcat ttattaagta cctgctgtat gtcaaggctt actactgctt
     5101 tccaatcctt ggtgatatga agacagataa gcacgctgcc tgctattagg aatctgagct
     5161 gagtggaagg ccaactatta aacctacatt gtaataaaca atggtggatg ctacggacac
     5221 attcagtctg ttcataaaac atggactgat gggtctgctc caggccacat ttgtttttta
     5281 acagtaacgt ggctaggctt ccatttataa gtcttagcat tatttccttt gtgaagtact
     5341 atgtaacaga tgattgtttg ctagattttg ttttctacaa tcaaaatgtt gacctgcaaa
     5401 gcagtgtagg attttctctc ctcaagagcg tgtattatta tctagtagaa aaagcattcc
     5461 caaagacttg gtccatgcag ataaggataa tgaaattgct cactctaatc ctttttctaa
     5521 atacagtgtt tttcaagctg gatgtaaatt agagtgggtg gatattgatt aaattatttg
     5581 atttatatga aatcaaatga ctggttgagg tttttttgaa catttacaaa taatggattc
     5641 ctgagagctc aggaagtact gtaatgtcag tgacatatga agctcctgat aaagatccac
     5701 ctcattcata tatttgagct tcagaaatac atgtacctag tataatgctt aacagcacat
     5761 aatatttgtt gatgagaaat acactgatga aacaacaca
//
