LOCUS       NM_001414004            1348 bp    mRNA    linear   PRI 10-APR-2024
DEFINITION  Homo sapiens SSU72 like 6 (SSU72L6), mRNA.
ACCESSION   NM_001414004
VERSION     NM_001414004.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1348)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1348)
  AUTHORS   Venter,J.C., Adams,M.D., Myers,E.W., Li,P.W., Mural,R.J.,
            Sutton,G.G., Smith,H.O., Yandell,M., Evans,C.A., Holt,R.A.,
            Gocayne,J.D., Amanatides,P., Ballew,R.M., Huson,D.H., Wortman,J.R.,
            Zhang,Q., Kodira,C.D., Zheng,X.H., Chen,L., Skupski,M.,
            Subramanian,G., Thomas,P.D., Zhang,J., Gabor Miklos,G.L.,
            Nelson,C., Broder,S., Clark,A.G., Nadeau,J., McKusick,V.A.,
            Zinder,N., Levine,A.J., Roberts,R.J., Simon,M., Slayman,C.,
            Hunkapiller,M., Bolanos,R., Delcher,A., Dew,I., Fasulo,D.,
            Flanigan,M., Florea,L., Halpern,A., Hannenhalli,S., Kravitz,S.,
            Levy,S., Mobarry,C., Reinert,K., Remington,K., Abu-Threideh,J.,
            Beasley,E., Biddick,K., Bonazzi,V., Brandon,R., Cargill,M.,
            Chandramouliswaran,I., Charlab,R., Chaturvedi,K., Deng,Z., Di
            Francesco,V., Dunn,P., Eilbeck,K., Evangelista,C., Gabrielian,A.E.,
            Gan,W., Ge,W., Gong,F., Gu,Z., Guan,P., Heiman,T.J., Higgins,M.E.,
            Ji,R.R., Ke,Z., Ketchum,K.A., Lai,Z., Lei,Y., Li,Z., Li,J.,
            Liang,Y., Lin,X., Lu,F., Merkulov,G.V., Milshina,N., Moore,H.M.,
            Naik,A.K., Narayan,V.A., Neelam,B., Nusskern,D., Rusch,D.B.,
            Salzberg,S., Shao,W., Shue,B., Sun,J., Wang,Z., Wang,A., Wang,X.,
            Wang,J., Wei,M., Wides,R., Xiao,C., Yan,C., Yao,A., Ye,J., Zhan,M.,
            Zhang,W., Zhang,H., Zhao,Q., Zheng,L., Zhong,F., Zhong,W., Zhu,S.,
            Zhao,S., Gilbert,D., Baumhueter,S., Spier,G., Carter,C.,
            Cravchik,A., Woodage,T., Ali,F., An,H., Awe,A., Baldwin,D.,
            Baden,H., Barnstead,M., Barrow,I., Beeson,K., Busam,D., Carver,A.,
            Center,A., Cheng,M.L., Curry,L., Danaher,S., Davenport,L.,
            Desilets,R., Dietz,S., Dodson,K., Doup,L., Ferriera,S., Garg,N.,
            Gluecksmann,A., Hart,B., Haynes,J., Haynes,C., Heiner,C.,
            Hladun,S., Hostin,D., Houck,J., Howland,T., Ibegwam,C., Johnson,J.,
            Kalush,F., Kline,L., Koduru,S., Love,A., Mann,F., May,D.,
            McCawley,S., McIntosh,T., McMullen,I., Moy,M., Moy,L., Murphy,B.,
            Nelson,K., Pfannkoch,C., Pratts,E., Puri,V., Qureshi,H.,
            Reardon,M., Rodriguez,R., Rogers,Y.H., Romblad,D., Ruhfel,B.,
            Scott,R., Sitter,C., Smallwood,M., Stewart,E., Strong,R., Suh,E.,
            Thomas,R., Tint,N.N., Tse,S., Vech,C., Wang,G., Wetter,J.,
            Williams,S., Williams,M., Windsor,S., Winn-Deen,E., Wolfe,K.,
            Zaveri,J., Zaveri,K., Abril,J.F., Guigo,R., Campbell,M.J.,
            Sjolander,K.V., Karlak,B., Kejariwal,A., Mi,H., Lazareva,B.,
            Hatton,T., Narechania,A., Diemer,K., Muruganujan,A., Guo,N.,
            Sato,S., Bafna,V., Istrail,S., Lippert,R., Schwartz,R., Walenz,B.,
            Yooseph,S., Allen,D., Basu,A., Baxendale,J., Blick,L., Caminha,M.,
            Carnes-Stine,J., Caulk,P., Chiang,Y.H., Coyne,M., Dahlke,C.,
            Deslattes Mays,A., Dombroski,M., Donnelly,M., Ely,D., Esparham,S.,
            Fosler,C., Gire,H., Glanowski,S., Glasser,K., Glodek,A.,
            Gorokhov,M., Graham,K., Gropman,B., Harris,M., Heil,J.,
            Henderson,S., Hoover,J., Jennings,D., Jordan,C., Jordan,J.,
            Kasha,J., Kagan,L., Kraft,C., Levitsky,A., Lewis,M., Liu,X.,
            Lopez,J., Ma,D., Majoros,W., McDaniel,J., Murphy,S., Newman,M.,
            Nguyen,T., Nguyen,N., Nodell,M., Pan,S., Peck,J., Peterson,M.,
            Rowe,W., Sanders,R., Scott,J., Simpson,M., Smith,T., Sprague,A.,
            Stockwell,T., Turner,R., Venter,E., Wang,M., Wen,M., Wu,D., Wu,M.,
            Xia,A., Zandieh,A. and Zhu,X.
  TITLE     The sequence of the human genome
  JOURNAL   Science 291 (5507), 1304-1351 (2001)
   PUBMED   11181995
  REMARK    Erratum:[Science 2001 Jun 5;292(5523):1838]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC005521.1 and KF458590.1.
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000473520.2/ ENSP00000492512.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-424               AC005521.1         64201-64624
            425-1022            KF458590.1         1-598               c
            1023-1348           AC005521.1         65223-65548
FEATURES             Location/Qualifiers
     source          1..1348
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="7"
                     /map="7q31.33"
     gene            1..1348
                     /gene="SSU72L6"
                     /gene_synonym="SSU72P8"
                     /note="SSU72 like 6"
                     /db_xref="GeneID:136157"
                     /db_xref="HGNC:HGNC:43627"
     exon            1..1348
                     /gene="SSU72L6"
                     /gene_synonym="SSU72P8"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..639
                     /gene="SSU72L6"
                     /gene_synonym="SSU72P8"
                     /note="SSU72 RNA polymerase II CTD phosphatase homolog
                     pseudogene 8; SSU72 pseudogene 8; CTD phosphatase SSU72L6;
                     RNA polymerase II subunit A C-terminal domain phosphatase
                     SSU72L6"
                     /codon_start=1
                     /product="RNA polymerase II subunit A C-terminal domain
                     phosphatase SSU72 like protein 6"
                     /protein_id="NP_001400933.1"
                     /db_xref="GeneID:136157"
                     /db_xref="HGNC:HGNC:43627"
                     /translation="MLSSPLRVAVVCVSNINRSMEAHSILRRKGLSVRSFGTESHVRL
                     PGRRPNHPVVYDFATTYKEMYNDLLRKDRECYTHNGILHILGRNERIKPGPERFQECT
                     EFFDVIFTCEERVYDTVVEDLCSREQQTFQPVHVINMDIKDTLEGAILGAFLICEICQ
                     CLQQSDDMEDSLEELLLQMEEKAGKSFLHTVCFY"
     regulatory      1328..1333
                     /regulatory_class="polyA_signal_sequence"
                     /gene="SSU72L6"
                     /gene_synonym="SSU72P8"
                     /note="hexamer: AATAAA"
     polyA_site      1348
                     /gene="SSU72L6"
                     /gene_synonym="SSU72P8"
                     /note="major polyA site"
ORIGIN      
        1 gtccctgcag cagctgaggt gcctgtgtct ctcttgttcc cagtggccac catcatgctc
       61 tcctccccac tcagggtggc tgtggtgtgt gtgagcaaca tcaacaggag catggaggcc
      121 cacagcatcc tcaggagaaa agggctaagt gtccggtctt tcggaactga atctcatgtg
      181 aggctaccag gacgaagacc caatcatcct gtagtttacg attttgcaac aacatataag
      241 gagatgtaca atgacctcct caggaaagat agagaatgct acacccacaa tggaatctta
      301 cacatcttgg gaagaaatga gagaatcaag cctggcccag aaagatttca ggaatgcact
      361 gaattctttg atgtcatctt tacctgtgag gagcgtgtct atgacacagt ggtggaagat
      421 ctgtgttcca gagaacagca gacctttcag cctgtgcacg tgatcaacat ggacatcaaa
      481 gataccctgg aaggtgccat cctgggagct ttcctcatct gtgagatttg ccagtgcctg
      541 cagcagtccg acgacatgga agacagtctg gaggagctgc tgttgcaaat ggaggagaag
      601 gcaggaaaaa gctttcttca caccgtctgc ttctactgaa gatctgggct ggctttgtct
      661 ccttcctcgg taagaactta ggcatgggac tttagtccag attgattgtg agaagtatct
      721 acaaagacct tccactgagt gctgtttgta ttacttttgt acatatcacc tggaaagaga
      781 ctattaccaa gaaaatattt tatgggaaat gagaaggact aacagtttta aaagcactga
      841 aaaatgcttg gcattgttct acatgcatta catacaataa ctaatttaat gcttatatta
      901 ttctacaagg aagctatccc accatgactg cattttccgg atgagcaaat ggagctgata
      961 atggactgct ggaaaaatga tttgtttaag ggtattcagc agataaataa cattgtatag
     1021 ataagcacct tttaaataga cttccttttc tcaatttgag tggttttttt tttaattttt
     1081 aaatttttta agttatttga gaccaatgga gtgtggtata ttaacttaaa tgttgttctt
     1141 ctttaataag agtataatat tacatgtttg aaccaataaa tgttttcaca tatagattat
     1201 atctttttta ctaatgctca ctttaatagg taaaatccaa gttggataat gaactacata
     1261 ttattgtaaa atttggaatt atctactcaa ataataggtc atcaaattaa atgaaataaa
     1321 aaatttaaat aaaaaaaaaa aaaagaaa
//
