LOCUS       XM_047440256            1355 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens serine palmitoyltransferase long chain base
            subunit 3 (SPTLC3), transcript variant X4, mRNA.
ACCESSION   XM_047440256
VERSION     XM_047440256.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000020.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="20"
     gene            1..1355
                     /gene="SPTLC3"
                     /gene_synonym="C20orf38; dJ718P11; dJ718P11.1; hLCB2b; LCB
                     3; LCB2B; LCB3; SPT 3; SPT3; SPTLC2L"
                     /note="serine palmitoyltransferase long chain base subunit
                     3; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 5 ESTs, 93 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 23 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:55304"
                     /db_xref="HGNC:HGNC:16253"
                     /db_xref="MIM:611120"
     CDS             297..1286
                     /gene="SPTLC3"
                     /gene_synonym="C20orf38; dJ718P11; dJ718P11.1; hLCB2b; LCB
                     3; LCB2B; LCB3; SPT 3; SPT3; SPTLC2L"
                     /codon_start=1
                     /product="serine palmitoyltransferase 3 isoform X3"
                     /protein_id="XP_047296212.1"
                     /db_xref="GeneID:55304"
                     /db_xref="HGNC:HGNC:16253"
                     /db_xref="MIM:611120"
                     /translation="MANPGGGAVCNGKLHNHKKQSNGSQSRNCTKNGIVKEAQQNGKP
                     HFYDKLIVESFEEAPLHVMVFTYMGYGIGTLFGYLRDFLRNWGIEKCNAAVERKEQKD
                     FVPLYQDFENFYTRNLYMRIRDNWNRPICSAPGPLFDLMERVSDDYNWTFRFTGRVIK
                     DVINMGSYNFLGLAAKYDESMRTIKDVLEVYGTGVASTRHEMGTLDKHKELEDLVAKF
                     LNVEAAMVFGMGFATNSMNIPALVGKGCLILSDELNHTSLVLGARLSGATIRIFKHNN
                     TQSLEKLLRDAVIYGQPRTRRAWKKILILVEGVYRTSWIIYGFTRIVLFMLHP"
ORIGIN      
        1 agtccccaga aggagccagc atggacaatc tcctttacag tttcggaagc aggtttgttg
       61 ccatggagtt cacattttga cgggagttga gaagtataaa ggtaaccatt tgttttagtt
      121 tcaacgatct gacaaaaaga taggctgttg ctcttcttct ggaaaagcct gattggtaag
      181 attcctttaa gggctcagcc ccaaagagct ttatcccatc ccctcgcaga ctgaaaacta
      241 aagcctgcag agacctctga aggaaaacct gtcccgggct ctgtcacttc acacccatgg
      301 ctaaccctgg aggtggtgct gtttgcaacg ggaaacttca caatcacaag aaacagagca
      361 atggctcaca aagcagaaac tgcacaaaga atggaatagt gaaggaagcc cagcaaaatg
      421 ggaagccaca tttttatgat aagctcattg ttgaatcgtt tgaggaagca ccccttcatg
      481 ttatggtttt cacttacatg ggatatggaa ttggaaccct gtttggctat ctcagagact
      541 ttttaagaaa ctggggaata gaaaaatgca acgcagctgt ggaaagaaaa gaacaaaaag
      601 attttgtgcc actgtatcaa gactttgaaa atttttatac aagaaacctt tacatgcgaa
      661 tcagagacaa ctggaaccgg cccatctgca gtgccccagg gcctctgttt gatttgatgg
      721 agagggtatc agacgactat aactggacgt ttaggtttac tggaagagtc atcaaagatg
      781 tcatcaacat gggctcctat aacttccttg gtcttgcagc caagtatgat gagtctatga
      841 ggacaataaa ggatgtttta gaggtgtatg gcacaggcgt ggccagcacc aggcatgaaa
      901 tgggcacctt ggataagcac aaggagttgg aggaccttgt ggctaagttc ctgaatgtgg
      961 aagcagctat ggtctttggg atgggattcg caactaactc aatgaatatc ccagcattag
     1021 ttggaaaggg atgcctcatt ttaagtgatg agttaaacca cacatcgctt gtgcttgggg
     1081 cccgactctc aggtgcaacc ataagaatct tcaaacacaa caacacacaa agcctagaga
     1141 agctcctgag agatgctgtc atctatggcc agcctcgaac ccgcagagct tggaaaaaga
     1201 ttctcatcct ggtggagggt gtctacagga cctcgtggat tatttacggg ttcactcgca
     1261 tagtgctgtt tatgcttcat ccatgagccc accgatagca gagcaaatca tcagatcact
     1321 aaaacttatc atgggactgg atgggaccac tcaag
//
