LOCUS       XM_047421644            3396 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens scaffold protein involved in DNA repair
            (SPIDR), transcript variant X13, mRNA.
ACCESSION   XM_047421644
VERSION     XM_047421644.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000008.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 13% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="8"
     gene            1..3396
                     /gene="SPIDR"
                     /gene_synonym="KIAA0146; ODG9"
                     /note="scaffold protein involved in DNA repair; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 110 ESTs, 121 long SRA reads, 2 Proteins, and
                     87% coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:23514"
                     /db_xref="HGNC:HGNC:28971"
                     /db_xref="MIM:615384"
     CDS             82..2409
                     /gene="SPIDR"
                     /gene_synonym="KIAA0146; ODG9"
                     /codon_start=1
                     /product="DNA repair-scaffolding protein isoform X13"
                     /protein_id="XP_047277600.1"
                     /db_xref="GeneID:23514"
                     /db_xref="HGNC:HGNC:28971"
                     /db_xref="MIM:615384"
                     /translation="MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAAS
                     LSEAWLRCGEGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWS
                     SSGSDLSDEDKTLSQLQRVCLIEGDYPSSFFDEPSSIEILEYSSDSEKEDDLENVLLI
                     DSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLL
                     RGGLAERLNGLQNRERSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAM
                     CEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSG
                     SCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVIKGLTNNSPEIQV
                     VCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVY
                     SLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCS
                     LVGMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPALCYILT
                     AHPNLGQIDIIDEDPIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQLKSLL
                     LLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAPLCVLGSEVLEALAGAAPHSLFF
                     KDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSATPVNSICSVQ
                     GTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRATK"
ORIGIN      
        1 aatggcaggg cgcggtgcgg cgcgccgagg tgggacggcg gcgcgctgag gaggcggtgc
       61 gctcaggcgg cgctcccgga gatgccccgc ggcagccgcg ctcggggctc taagagaaaa
      121 aggagttgga atacagaatg cccatccttt ccaggagaaa gaccactgca ggtcagaaga
      181 gcaggtctca ggacagcagg ggcagctgcc tctctctctg aagcatggct caggtgtgga
      241 gaagggtttc agaacacttc tgggaatccg tcattaacag ctgaagagaa gacgattaca
      301 gaaaagcacc ttgaattatg ccctagaccc aagcaagaaa ccaccacatc taaaagcacc
      361 agtgggctta cagacataac atggagctcc agtggaagtg atttgtcgga tgaagataag
      421 acactttctc agttacagag agtgtgcctg atagaaggtg actacccaag cagttttttt
      481 gacgagccaa gttctataga aattttagag tattcatcag atagtgaaaa agaagatgat
      541 ttggaaaatg tcctactcat tgattcagaa tcccctcaca aataccacgt gcagtttgca
      601 tcggatgcaa gacagattat ggagagactg atagatccaa ggacaaaatc aacagagacc
      661 attttgcata cacctcagaa acccacagct aagtttccca ggactccaga aaattcagca
      721 aagaagaagc ttttaagagg tggactagca gaaagactaa atggactgca gaatcgagag
      781 agatctgcta tttctttgtg gagacatcaa tgtatttctt accaaaagac actttcaggt
      841 agaaaatctg gtgtattaac tgtgaaaatt ttagagctgc atgaggaatg tgccatgcaa
      901 gttgccatgt gtgagcagtt attggggtca ccagccacca gctcctccca aagtgtggct
      961 cccaggcctg gagctggcct gaaagttctc ttcaccaagg agactgcagg ctacctcagg
     1021 ggccgtcccc aggacactgt ccggatcttc cctccctggc aaaaactgat tattccaagt
     1081 ggaagttgcc ctgttattct gaatacttac ttttgtgaga aagttgttgc caaagaagat
     1141 tcagaaaaaa cttgtgaagt gtactgtccg gacatacccc ttccaagaag aagcatctct
     1201 ttggcccaga tgtttgtaat taagggtcta acaaataatt cacctgaaat ccaggttgtg
     1261 tgtagtggtg tagccactac agggacagcc tggacccatg ggcacaaaga agcaaaacag
     1321 cgcatcccaa ccagcactcc cctgagggat tctctcctgg atgtggtgga aagccaggga
     1381 gctgcctcgt ggccaggagc tggagtccga gtggtggtgc aaagagtgta ttctcttccc
     1441 agcagagaca gcaccagggg tcagcagggg gccagctcag gacacacaga cccagctgga
     1501 actcgagcct gccttctggt acaagatgcc tgtggaatgt tcggtgaagt gcacttggag
     1561 ttcaccatgt cgaaggcaag acagttggaa gggaagtctt gcagcctggt gggaatgaag
     1621 gttctacaga aagtcaccag aggaaggaca gcggggattt tcagtttgat tgacaccctg
     1681 tggcccccag cgatacctct gaaaacacct ggccgcgacc agccctgtga agagataaaa
     1741 actcatctgc ctcctccagc cttgtgttac atcctcacag ctcatccaaa tctgggacaa
     1801 attgatataa ttgacgaaga ccccatttat aagctttacc agcctccagt tacccgctgc
     1861 ttaagagaca ttctccagat gaatgatctt ggtacccgtt gcagtttcta tgccacggtg
     1921 atttaccaaa aaccacagct gaagagtctg ctgcttctgg agcaaaggga gatctggctg
     1981 ctagtgaccg atgtcactct gcaaacgaag gaggagagag accccaggct ccccaaaacc
     2041 ctgctggtct atgtggcccc cttgtgtgtg ctgggctctg aagtcctgga ggcactcgct
     2101 ggggctgccc ctcacagcct cttcttcaag gacgctctcc gtgaccaggg tcggattgtt
     2161 tgtgctgaac gaactgtcct cttgcttcag aagccccttt tgagtgtggt ctctggtgca
     2221 agttcctgtg agctgcctgg cccggtgatg ctcgacagcc tggactctgc aacacctgtc
     2281 aactccatct gcagtgttca aggcactgtg gttggcgtgg acgagagcac tgctttctca
     2341 tggcctgtgt gtgacatgtg tggcaacggg agattggaac agaggccgga agacagagct
     2401 acgaagtgaa gagtgtcctc ggaaaggaag tggggttgtt aaattgtttt gtccagtccg
     2461 taaccgccca cccgaccagc tgcattggat tggaggaaat cgagcttctg agtgcaggag
     2521 gggcctctgc agaacactag cggttgccgc aggatctgtg aactttgcaa tgtggctgca
     2581 agggtggtgg tggtggtggt gatttggggt agttatttgt taactatgga cacagtgaac
     2641 gtagtttacg atcttgaaat gaaacttaga tttttctggg gaaatgttca gatacagttt
     2701 tgtgaactgt aaatcaaaat acctttttct acagtttatc ttttattttc tgcaaattta
     2761 ggaacatatt tactcgtttt cacattgaat cttaagttta agctcttcat ttggtattta
     2821 ggcaatatat gagaaaaaaa ttttttttgt tcatttgtaa ttttaacaag ttgaacattt
     2881 taccatgatt gaacatgttt ttattacagt atttaacatt cccccaaaga ataccctgca
     2941 aagtgtaaac ctttgtccca tactgtgata ttactgttct gctacaataa atgtcaaacc
     3001 taagcacttt gcagttcact acttttggga aaatgttcta gggaactgta tcacaggtga
     3061 aactgttacc cataaagtgt agctctctga actggtgtga tcgtgtctct gctgaatggt
     3121 ggtggggata gctggctcca ccacacacac ctgttttaat taggctgggt aatgtgcacg
     3181 gagagcaaag atcacagact aaggagcagt cagtcggata tttgctttgc tggcaaagat
     3241 ttaaaccaag aattaattat ctttggacac tataaagatt ttgttccctt ccttatagca
     3301 atataatcat gacaggccat ggttaactac atcagataca cgtagcagcc gtgaccaaga
     3361 catggtgccc taataccaag tgttcttggg ttaaag
//
