LOCUS       NM_001141917            4248 bp    mRNA    linear   PRI 02-APR-2024
DEFINITION  Homo sapiens SPATA31 subfamily F member 1 (SPATA31F1), mRNA.
ACCESSION   NM_001141917 XR_041842 XR_041843
VERSION     NM_001141917.2
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4248)
  AUTHORS   Yamada,Y., Kato,K., Oguri,M., Horibe,H., Fujimaki,T., Yasukochi,Y.,
            Takeuchi,I. and Sakuma,J.
  TITLE     Identification of nine genes as novel susceptibility loci for
            early-onset ischemic stroke, intracerebral hemorrhage, or
            subarachnoid hemorrhage
  JOURNAL   Biomed Rep 9 (1), 8-20 (2018)
   PUBMED   29930801
REFERENCE   2  (bases 1 to 4248)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DC402407.1, DC403775.1, AL162231.20, AK302320.1 and BX104598.1.
            This sequence is a reference standard in the RefSeqGene project.
            
            On May 17, 2019 this sequence version replaced NM_001141917.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The extent of this transcript is
            supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189667.33182.1, DC402695.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000378788.4/ ENSP00000417711.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-56                DC402407.1         51-106
            57-538              DC403775.1         77-558
            539-3310            AL162231.20        79521-82292         c
            3311-4246           AK302320.1         1714-2649
            4247-4248           BX104598.1         504-505
FEATURES             Location/Qualifiers
     source          1..4248
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9p13.3"
     gene            1..4248
                     /gene="SPATA31F1"
                     /gene_synonym="C9orf144B; FAM205A"
                     /note="SPATA31 subfamily F member 1"
                     /db_xref="GeneID:259308"
                     /db_xref="HGNC:HGNC:41911"
     exon            1..205
                     /gene="SPATA31F1"
                     /gene_synonym="C9orf144B; FAM205A"
                     /inference="alignment:Splign:2.1.0"
     CDS             62..4069
                     /gene="SPATA31F1"
                     /gene_synonym="C9orf144B; FAM205A"
                     /note="transmembrane protein C9orf144B; protein FAM205A;
                     family with sequence similarity 205 member A"
                     /codon_start=1
                     /product="protein SPATA31F1"
                     /protein_id="NP_001135389.1"
                     /db_xref="CCDS:CCDS55305.1"
                     /db_xref="GeneID:259308"
                     /db_xref="HGNC:HGNC:41911"
                     /translation="MLSPTFVLWEVGYPLYIYGSIFIVIVIIWQVKRSHHELSSEPKR
                     SCCRCHQKVRQRARDAASTARRRSREEAEKPQKLLSIIKSQGWLPLERSVRRILCADP
                     CCQICNSVALEIQQLLVGENNQISLTLSGPLQGSSCLEMLSTSSMSLDQSLEFHSWHT
                     RELSLSSVTPTLSQLTDQKSLTQSAAQSTYADGIQDYWADHLQLGQEFQVPDVLRGPN
                     TIASSRIEKPRAPLNQEEMTQSNPSLVQGNQGQHHLNSQVSLLSLNPETLNRMHPMAL
                     HMVLPAHLPFLSPEVLRLLEVHVKKWMHFQRWGLPRRVEESLRQLMPNPPLYYQPGND
                     QPVSFNLKNTPQVSLHRFETISLQTWCSCVAGQPIQTFWVSEWSTMNPEQRHHCQQTP
                     NPMALALPSPALKALSGPHPQSGGQDNDSGSDLQQKYSQLFCGLPSLHSESLVATFMG
                     SQGLPKIENVPKPPLKDPFLFNELSFPQLLPKTSPQSAPPSSPLSPNWMSPSDHQRAQ
                     INVPFLTLAEYEALEWHLLQRQLQLQWGWPAALQRSQHTQCLMQHEPCGKAQSPETTT
                     ASQTGKSISVLTRELLFFPEHARKLLEFHIQKQLIRHRWGLPQKIQQSIQLLLTSTDQ
                     QTVSSSSTALANVSIPQPVALEANGACDVLSPIAAPVSIPRPHLLTQVKAILQSHIDS
                     KCGQIHQGKIPACVHRSWDCRISGVLAVAPFPCIPESQFLELQTASDPDLHHKVMPWM
                     PTALDQQQQALPGTVTEHPKLLRVLSVEAIEKLETTLRHKHLAFLSGLPALYYVALPR
                     ALAPAVTSQSVITEMEPSPVEIPAEPLIQMVSFEEQCISLGPCPQGNNESCTDVAKEF
                     QPAVPVKGTMETLPLESQTHPTSPHSLQTHILTKLNFHLRKKVLEIQWGIPIRARKSR
                     EQTVAAPENISTQKSLESLNHQGETLLQELPIPPDTLPAPNPEGVHLKEQLANDLKAV
                     QQNQKQSNSKAVPQGSAHSVSKISQPSGDMTEAHMPCVQVEANVNKPSLEEPCGPEPQ
                     SPSKSKDPAHVPMLAGNREDPEETKAARDHREGDAGFGRSSTREERRPAEDQRPAGML
                     PNKTPRGSWRWSRSFHLADPCQHSPQHHPQLKLPQLPPRVPGEKESEKDLQDSQTKLT
                     VILEPATIPENAQTVLPQASQGQPFLSQPTQAKPLQGQTLQGQVLHGLVMPVHAQKKP
                     SLTESSFRNKIKCFLQHINPKTKGKGHEDSMFSAAAKVAKTRKENVAKSLAPAKSPVG
                     RSKTEKPTGCSKAQSRPAQKLVGPAFLDGPQSLDDKLRLHSRQPGSASALGYPRHCPR
                     HCPREACANKPGHPT"
     exon            206..251
                     /gene="SPATA31F1"
                     /gene_synonym="C9orf144B; FAM205A"
                     /inference="alignment:Splign:2.1.0"
     exon            252..312
                     /gene="SPATA31F1"
                     /gene_synonym="C9orf144B; FAM205A"
                     /inference="alignment:Splign:2.1.0"
     exon            313..4248
                     /gene="SPATA31F1"
                     /gene_synonym="C9orf144B; FAM205A"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4225..4230
                     /regulatory_class="polyA_signal_sequence"
                     /gene="SPATA31F1"
                     /gene_synonym="C9orf144B; FAM205A"
                     /note="hexamer: AATACA"
     polyA_site      4248
                     /gene="SPATA31F1"
                     /gene_synonym="C9orf144B; FAM205A"
                     /note="major polyA site"
ORIGIN      
        1 accagaaccc tgaattccga gatagaggga tggttgatct catgctaatg aagtttagac
       61 catgttgagc cctacttttg ttctgtggga agttggatat cccttataca tctatggctc
      121 catcttcatc gttattgtaa ttatctggca agtgaaaagg agccaccatg aattgagttc
      181 agaacctaaa aggagctgct gccggtgtca ccaaaaagtc aggcaaagag ctagagatgc
      241 agcatcaaca gctaggagac gttcccggga agaagctgag aagccacaga agctgctctc
      301 catcattaaa agccagggct ggcttcctct ggagagaagt gtgcggcgaa tcctgtgtgc
      361 agatccctgc tgccaaatct gcaattctgt ggctctggag attcagcaat tgctggtggg
      421 tgagaacaac cagatctccc tgactttatc ggggccattg cagggctcct cttgcctaga
      481 gatgctgtct acgtctagta tgtctttaga tcagagtctg gagtttcatt cctggcacac
      541 cagagagctt tcactgtcat ctgtaacccc aacactgtca caattaacag atcagaaatc
      601 tttaacccag tcagctgccc agtcaacgta tgcagatggc atacaagatt actgggctga
      661 tcacctccag ctagggcagg aatttcaagt gccagatgtg ctccggggcc caaacaccat
      721 agcttcttca aggattgaga agccaagggc tccactgaac caggaggaga tgacgcagag
      781 caaccccagc cttgtccagg gaaaccaagg ccagcatcac ttgaattccc aggtctcctt
      841 gctgtccctg aacccagaaa ccctgaaccg gatgcatcca atggccttgc atatggtcct
      901 ccctgcccac ctgccatttc tcagtcctga agtgctgagg cttcttgagg tacatgttaa
      961 aaaatggatg catttccaga ggtgggggct cccaagacgt gtggaggagt ccctgaggca
     1021 gcttatgcca aacccaccat tgtattacca acctggaaat gaccagccag tttctttcaa
     1081 cctgaagaat actcctcagg tctctcttca tagatttgag accatttccc tccagacctg
     1141 gtgttcatgt gtggctggcc agcccatcca gaccttctgg gtttctgaat ggtccacaat
     1201 gaacccagaa caaagacacc actgtcagca aactccaaac cctatggctc tagccttgcc
     1261 ctctccagcc cttaaagccc taagtggccc ccatccacag tctgggggac aagataatga
     1321 ctcagggagt gatctccagc agaaatacag ccagctattc tgtgggctcc cttctctgca
     1381 cagtgagtcc ctggttgcca ctttcatggg atctcaaggc ctccccaaga ttgaaaatgt
     1441 gcccaagccc cccttgaagg atccttttct cttcaatgag ctctccttcc cccaactgct
     1501 ccctaaaact tcaccccagt cagccccacc ctcttcccca ctttccccaa actggatgtc
     1561 tccatctgac catcaacgag ctcagatcaa tgtcccattt ctgactctgg ctgagtatga
     1621 agccttggag tggcacctgc tacagaggca actccagctt cagtggggct ggccagctgc
     1681 cctccagagg tctcagcaca cccagtgcct catgcagcat gagccctgtg gcaaagctca
     1741 gtctcctgag accacgacag cttcccagac agggaagtcc atctcagtgc tcaccaggga
     1801 actactcttc ttcccggagc atgcccggaa gctgctggaa ttccacatcc agaaacagtt
     1861 gattcgccat cgctggggcc tgcctcagaa gatccagcag tccatccagt tgctccttac
     1921 ctccactgat cagcagactg tgtccagcag cagcacagcc ctagccaacg tgagcatccc
     1981 ccagcctgta gccctagagg ccaacggggc ttgcgatgtg ctgtcaccca ttgcggcccc
     2041 agtgtccatc cccaggccac acttgttaac tcaggtcaag gcaatactgc agagccacat
     2101 cgactccaaa tgtggacaaa tccaccaggg caagatcccc gcctgtgtac acaggtcctg
     2161 ggactgcaga atttctgggg tcctggcagt ggctcctttt ccctgcattc cagaaagcca
     2221 gttcctggaa ctgcagacag caagtgaccc ggacctgcat cacaaagtta tgccctggat
     2281 gccaacggcc cttgatcagc agcaacaggc tttaccaggt actgtcactg aacaccctaa
     2341 gctgctccga gtcttgtctg tggaagccat tgagaaactg gagacaactt tacggcacaa
     2401 gcatctggcc ttcctgtcgg ggctgcctgc tctgtattat gtggcgctcc ccagggccct
     2461 ggccccggca gtcactagcc aatctgtcat cacagagatg gagcctagtc ccgtggaaat
     2521 cccagcagag cctctgattc agatggtttc atttgaagaa cagtgtataa gtcttgggcc
     2581 atgccctcaa ggcaacaatg agagttgtac agacgttgca aaagagttcc agcctgcagt
     2641 gccagtaaaa ggaacaatgg agacgctgcc tctagaaagc cagacgcatc ctactagccc
     2701 ccactcactc cagacacata tcttgaccaa actaaacttc cacctgagaa aaaaggtcct
     2761 agagatacaa tggggaattc ccattagggc aaggaagtcc agggaacaaa ctgttgcagc
     2821 accagagaac atatccacac agaagtctct tgaaagtcta aaccaccaag gggagacatt
     2881 gctccaggaa ctgcccatcc caccagacac tcttcctgcc cctaatccag aaggggttca
     2941 ccttaaagaa cagctggcca atgacttgaa ggcagtgcag cagaaccaaa agcaatccaa
     3001 ttccaaagct gtaccccagg gttctgccca ctcggtctcc aagatctcac agcccagtgg
     3061 ggacatgaca gaggcccaca tgccttgtgt tcaggtagag gccaatgtga acaaacccag
     3121 cctggaggaa ccctgtggcc ctgagcctca aagccctagc aagagcaagg acccagccca
     3181 tgtccccatg ctagcaggaa acagagagga cccagaggaa accaaagcag ccagggacca
     3241 cagagaaggg gatgcggggt ttgggcgctc ctcaaccaga gaagagagac gccctgctga
     3301 agaccagagg ccagcaggga tgcttccaaa caagacaccc cgagggtcct ggcgatggag
     3361 ccgtagcttt catcttgctg atccctgtca acacagcccc cagcatcacc ctcagcttaa
     3421 gctcccacag ctacctccac gagtccctgg ggagaaagag tctgagaagg acctgcaaga
     3481 cagtcaaacc aagctaactg tcatccttga accagcgaca attcctgaga atgcccagac
     3541 tgtgttgccc caggcttcac agggtcagcc tttcctgagc caaccaactc aggctaagcc
     3601 tttgcagggc caaactttgc aaggccaagt tttgcatggg ctggtgatgc cagtccatgc
     3661 tcaaaagaag cccagcctta cagagtctag cttcagaaat aaaattaaat gttttctgca
     3721 gcatattaac cccaagacaa aaggcaaagg gcatgaggac tccatgttct cagccgctgc
     3781 gaaggtggcc aaaaccagaa aagaaaatgt tgcaaagagc ctggctccag ccaagagccc
     3841 tgtggggaga agtaagacgg agaagccgac agggtgctcc aaggcccaat ctcgtcctgc
     3901 tcagaagctg gtgggcccag ccttcttgga tggtccccaa tccctagacg ataagctccg
     3961 gctacactcc agacaacctg gctctgcctc agccctgggc tacccccgcc actgccctcg
     4021 tcactgtcct cgagaggctt gtgccaacaa accagggcac ccaacctagc tcctgaccct
     4081 cacctcagat agaaacattg gtccgctcaa ggagaacatg cagagccatg aaaaagagtt
     4141 tataggctcc ccaactgctg cagccctcca gaggaccagt attgtcattt ccataaatgt
     4201 gcaggtggga cagatgccac tagaaataca ctctatattt ctcagcaa
//
