LOCUS       NM_178828               4431 bp    mRNA    linear   PRI 01-JUN-2024
DEFINITION  Homo sapiens SPATA31 subfamily E member 1 (SPATA31E1), mRNA.
ACCESSION   NM_178828
VERSION     NM_178828.5
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4431)
  AUTHORS   Humphray,S.J., Oliver,K., Hunt,A.R., Plumb,R.W., Loveland,J.E.,
            Howe,K.L., Andrews,T.D., Searle,S., Hunt,S.E., Scott,C.E.,
            Jones,M.C., Ainscough,R., Almeida,J.P., Ambrose,K.D., Ashwell,R.I.,
            Babbage,A.K., Babbage,S., Bagguley,C.L., Bailey,J., Banerjee,R.,
            Barker,D.J., Barlow,K.F., Bates,K., Beasley,H., Beasley,O.,
            Bird,C.P., Bray-Allen,S., Brown,A.J., Brown,J.Y., Burford,D.,
            Burrill,W., Burton,J., Carder,C., Carter,N.P., Chapman,J.C.,
            Chen,Y., Clarke,G., Clark,S.Y., Clee,C.M., Clegg,S., Collier,R.E.,
            Corby,N., Crosier,M., Cummings,A.T., Davies,J., Dhami,P., Dunn,M.,
            Dutta,I., Dyer,L.W., Earthrowl,M.E., Faulkner,L., Fleming,C.J.,
            Frankish,A., Frankland,J.A., French,L., Fricker,D.G., Garner,P.,
            Garnett,J., Ghori,J., Gilbert,J.G., Glison,C., Grafham,D.V.,
            Gribble,S., Griffiths,C., Griffiths-Jones,S., Grocock,R., Guy,J.,
            Hall,R.E., Hammond,S., Harley,J.L., Harrison,E.S., Hart,E.A.,
            Heath,P.D., Henderson,C.D., Hopkins,B.L., Howard,P.J., Howden,P.J.,
            Huckle,E., Johnson,C., Johnson,D., Joy,A.A., Kay,M., Keenan,S.,
            Kershaw,J.K., Kimberley,A.M., King,A., Knights,A., Laird,G.K.,
            Langford,C., Lawlor,S., Leongamornlert,D.A., Leversha,M., Lloyd,C.,
            Lloyd,D.M., Lovell,J., Martin,S., Mashreghi-Mohammadi,M.,
            Matthews,L., McLaren,S., McLay,K.E., McMurray,A., Milne,S.,
            Nickerson,T., Nisbett,J., Nordsiek,G., Pearce,A.V., Peck,A.I.,
            Porter,K.M., Pandian,R., Pelan,S., Phillimore,B., Povey,S.,
            Ramsey,Y., Rand,V., Scharfe,M., Sehra,H.K., Shownkeen,R.,
            Sims,S.K., Skuce,C.D., Smith,M., Steward,C.A., Swarbreck,D.,
            Sycamore,N., Tester,J., Thorpe,A., Tracey,A., Tromans,A.,
            Thomas,D.W., Wall,M., Wallis,J.M., West,A.P., Whitehead,S.L.,
            Willey,D.L., Williams,S.A., Wilming,L., Wray,P.W., Young,L.,
            Ashurst,J.L., Coulson,A., Blocker,H., Durbin,R., Sulston,J.E.,
            Hubbard,T., Jackson,M.J., Bentley,D.R., Beck,S., Rogers,J. and
            Dunham,I.
  TITLE     DNA sequence and analysis of human chromosome 9
  JOURNAL   Nature 429 (6990), 369-374 (2004)
   PUBMED   15164053
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK125845.1, AL834438.1 and AL772337.17.
            
            On May 17, 2019 this sequence version replaced NM_178828.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC137349.1, AK125845.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000325643.6/ ENSP00000322640.5
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1017              AK125845.1         21-1037
            1018-4427           AL834438.1         136-3545
            4428-4431           AL772337.17        80835-80838
FEATURES             Location/Qualifiers
     source          1..4431
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9q22.1"
     gene            1..4431
                     /gene="SPATA31E1"
                     /gene_synonym="C9orf79; FAM75E1"
                     /note="SPATA31 subfamily E member 1"
                     /db_xref="GeneID:286234"
                     /db_xref="HGNC:HGNC:26672"
     exon            1..324
                     /gene="SPATA31E1"
                     /gene_synonym="C9orf79; FAM75E1"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..4353
                     /gene="SPATA31E1"
                     /gene_synonym="C9orf79; FAM75E1"
                     /note="FAM75-like protein C9orf79; XXyac-YM21GA2.5;
                     protein FAM75E1; family with sequence similarity 75,
                     member E1"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 31E1"
                     /protein_id="NP_849150.3"
                     /db_xref="CCDS:CCDS6676.1"
                     /db_xref="GeneID:286234"
                     /db_xref="HGNC:HGNC:26672"
                     /translation="MGNLVIPLGKGRAGRVESGQRIPPPAPRPSVECTGDDIALQMEK
                     MLFPLKSPSATWLSPSSTPWMMDFILTSVCGLVLLFLLLLYVHSDPPSPPPGRKRSSR
                     EPQRERSGRSRSRKISALKACRILLRELEETRDLNYLLESHLRKLAGEGSSHLPLGGD
                     PLGDVCKPVPAKAHQPHGKCMQDPSPASLSPPAPPAPLASTLSPGPMTFSEPFGPHST
                     LSASGPPEPLLPLKCPATQPHVVFPPSPQPHGPLASSPPPPDSSLAGLQCGSTTCPVP
                     QSSPLHNQVLPPPTRVISGLGCSSDPIWDLYCWREAATTWGLSTYSHGKSQPRHLPDH
                     TSEASFWGDPTPKHMEVGGCTFIHPDVQKLLETLIAKRALMKMWQEKERKRADHPHMT
                     SLGKEWDITTLNPFWNVSTQPQQLPRPQQVSDATTVGNHLQQKRSQLFWDLPSLNSES
                     LATTVWVSRNPSSQNAHSVPLDKASTSLPGEPEVEASSQLSQAPPQPHHMAQPQHFTP
                     AWPQSQPPPLAEIQTQAHLSPPVPSLGCSSPPQIRGCGASYPTSQERTQSVIPTGKEY
                     LEWPLKKRPKWKRVLPSLLKKSQAVLSQPTAHLPQERPASWSPKSAPILPGVVTSPEL
                     PEHWWQGRNAIHQEQSCGPPSRLQASGDLLQPDGEFPGRPQSQAEDTQQALLPSQPSD
                     FAGKGRKDVQKTGFRSSGRFSDKGCLGSKLGPDPSRDQGSGRTSVKALDEDKEAEGDL
                     RRSWKYQSVSSTPRDPDKEHLENKLQIHLARKVGEIKEGWIPMPVRRSWLMAKCAVPK
                     SDTHRKPGKLASWRGGKAHVNTSQELSFLHPCTQQILEVHLVRFCVRHSWGTDLQSLE
                     PINVWSGEAQAPPFPQSTFTPWASWVSRVESVPKVPIFLGKRPQNGPGDNRTTSKSVP
                     TVSGPLAAPPPEQEGVQRPPRGSQSADTHGRSEAFPTGHKGRGCSQPPTCSLVGRTWQ
                     SRTVLESGKPKPRLEGSMGSEMAGNEAWLESESMSPGDPCSSRALQVLSIGSQWARAE
                     DALQALKVGEKPPTWEVTLGASVRASSGSVQEDLRSTGALGTTGNPSASSVCVAQDPE
                     QLHLKAQVVSEIALIVQVDSEEQLPGRAPGILLQDGATGLCLPGRHMDMLTAADRLPT
                     QAPLSTSQSVSGKNMTASQGPCALLWKGGDSPGQQEPGSPKAKAPQKSQKTLGCADKG
                     EAHRRPRTGEQGHRSKGPRTSEASGRSHPAQAREIGDKQERKYNQLQLEKGQTPPESH
                     FQRKISHHPQGLHPRKGGTRWEDVLQKGKPGADAFQSWGSGPPRQFMDCMADKAWTIS
                     RVVGQILVDKLGLQWGRGPSEVNRHKGDFRAQENVPSCCHRGHCHQERSREMRALACS
                     PKATPKGHHCPVKNRGIRDRDSSWAPPPREPVSPAGPHHHRPRMASTSGGPHPQLQEL
                     MSAQRCLAS"
     exon            325..379
                     /gene="SPATA31E1"
                     /gene_synonym="C9orf79; FAM75E1"
                     /inference="alignment:Splign:2.1.0"
     exon            380..440
                     /gene="SPATA31E1"
                     /gene_synonym="C9orf79; FAM75E1"
                     /inference="alignment:Splign:2.1.0"
     exon            441..4431
                     /gene="SPATA31E1"
                     /gene_synonym="C9orf79; FAM75E1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4406..4411
                     /regulatory_class="polyA_signal_sequence"
                     /gene="SPATA31E1"
                     /gene_synonym="C9orf79; FAM75E1"
                     /note="hexamer: AATAAA"
     polyA_site      4431
                     /gene="SPATA31E1"
                     /gene_synonym="C9orf79; FAM75E1"
                     /note="major polyA site"
ORIGIN      
        1 agttgcttga aggcgatggg aaatctcgtc atccctctag ggaagggcag ggcaggcagg
       61 gttgagagtg ggcagaggat tccaccccca gctcccagac catctgtgga gtgcacagga
      121 gacgacattg cacttcagat ggagaaaatg ctctttcctc tgaagagccc tagtgccaca
      181 tggctgagcc ctagctccac tccctggatg atggatttca tcctcaccag tgtgtgtggc
      241 ctagtgctcc tcttcctatt gctcctctac gtccacagtg acccaccctc acccccgccc
      301 gggaggaaga ggagcagcag ggagcctcaa agggagagaa gcgggaggtc caggagcagg
      361 aagatctcag ctctgaaagc ttgcagaatc ctcctgaggg agctggagga gactcgggac
      421 ctgaactacc ttctggaaag ccacctgagg aagctcgctg gcgaaggcag ctcccacctg
      481 cccttaggtg gagaccccct gggggacgtg tgtaaaccag tgcctgctaa ggcccaccag
      541 ccgcatggga aatgcatgca agatccgtct cctgccagct tgtccccacc agctccccca
      601 gctcctctgg cctccaccct gtcaccaggc ccgatgacct tctcagagcc ttttggacca
      661 cactcaaccc tgagtgcctc cgggccacca gagcccttgc ttcccctaaa atgccctgca
      721 acccagccac atgtggtttt tcctccttca ccacagccgc atggtcccct ggcctcctct
      781 ccacctccac ccgactccag cctggctgga cttcagtgtg gctccacaac atgccccgtc
      841 ccccagagct cccctctaca caaccaggtg ctgcctcctc caaccagggt gatctctggc
      901 ctggggtgct ccagcgatcc catctgggac ctctattgct ggagggaggc tgccaccacc
      961 tggggcctct ccacctactc acatggcaaa tcccagccac ggcatcttcc cgaccacacc
     1021 tcagaggctt ccttctgggg agaccccaca cccaagcaca tggaggtagg tggctgcaca
     1081 ttcatccacc ctgacgtgca gaagctgctg gagaccctca tcgccaagag agcactgatg
     1141 aagatgtggc aggagaaaga aagaaaacgg gccgaccacc cgcacatgac atcactgggg
     1201 aaggagtggg acatcacgac cctaaatccc ttctggaacg tgtcaaccca gccacagcag
     1261 ctgccccgtc ctcagcaagt ctctgatgcc acaaccgtgg ggaaccactt acagcagaaa
     1321 cgcagccagc ttttctggga cctcccctct ctcaatagcg agtccctggc gaccacagtc
     1381 tgggtttcta ggaacccttc ctcacagaat gcacactctg taccactgga taaagcctcc
     1441 acttctcttc caggtgaacc tgaggttgag gcatcctcac agctttccca ggcaccgccc
     1501 cagccccacc acatggccca gccccaacat ttcactccag cctggcccca gtcccagccc
     1561 ccacctttgg ctgagatcca gacccaggcc cacctctcac cccctgtccc aagcctgggg
     1621 tgctcttctc caccccagat taggggctgt ggggcatctt accctacatc ccaggagagg
     1681 acacagtctg tcatccccac tggaaaggag tatcttgaat ggcccttgaa gaagcgacca
     1741 aagtggaaga gggttttgcc ctctctcctc aaaaagtctc aggctgttct gagccagccc
     1801 actgcccacc ttccccaaga gaggccggcc tcctggagcc ccaagtcagc ccccatcctt
     1861 cccggggttg tcaccagccc tgagctccca gagcactggt ggcaaggaag gaatgccatc
     1921 caccaggagc agtcctgtgg ccctcccagc agattgcagg catctgggga cctgctacag
     1981 cctgatgggg aattcccagg gaggccccag agtcaggcag aagacacgca gcaggccctc
     2041 ttgccctccc agccttctga ctttgcaggg aagggcagga aggatgtgca gaagaccggg
     2101 ttcaggagct ccggaaggtt ctctgacaag gggtgcttag ggtccaaact agggccggac
     2161 ccaagccggg atcaaggctc aggaaggacc tcagtgaagg ctctggacga agacaaggag
     2221 gcagaaggtg acttacggag gtcctggaag taccaatcag taagttccac acccagggac
     2281 ccagacaagg agcatctgga aaacaagctg caaatccatc tggccaggaa ggtaggggag
     2341 atcaaagagg gctggatccc catgcctgtg cgtcgctcct ggctcatggc caaatgtgct
     2401 gttcccaagt ctgacaccca caggaaacct gggaagctgg catcctggag gggtgggaaa
     2461 gcccacgtga acacctccca ggagctttcc ttcctccatc cctgcaccca gcagatactg
     2521 gaagtacatc ttgtaaggtt ctgtgtgagg cacagctggg gtacagacct ccagtccctg
     2581 gagcccataa atgtctggtc aggtgaggct caggccccgc ccttcccaca atccaccttt
     2641 accccctggg cctcctgggt atctcgggtt gaatctgtac ccaaggttcc cattttcctg
     2701 ggaaaacgtc ctcagaatgg tccaggagac aacagaacaa caagcaagtc agtcccgacc
     2761 gtgagtggcc ctctcgctgc cccaccgcct gagcaggagg gagtccagag gcccccgaga
     2821 gggtcccagt cagctgatac ccatgggcga tcagaggcct ttccgactgg acacaagggc
     2881 agggggtgtt ctcagccccc aacatgcagc cttgtgggca gaacctggca gagcaggact
     2941 gtcctggaat ccgggaaacc caaacccaga ctagagggga gtatgggttc agaaatggct
     3001 gggaacgagg catggcttga gagtgagagc atgtccccag gagacccctg tagtagcaga
     3061 gccctgcaag tgctcagcat agggtcccag tgggcaaggg ctgaagatgc cctgcaggca
     3121 ctgaaagtgg gggagaagcc cccaacttgg gaagtcacct tgggagccag tgtgagggca
     3181 agttcgggaa gtgttcagga ggatctgagg agcacagggg ctctggggac cactggtaac
     3241 ccctcagcgt cttcagtctg tgttgctcag gatccagagc agctgcacct gaaagcgcag
     3301 gtggtcagtg agattgcgct catagtgcag gtggactcag aggagcagct gccaggccgt
     3361 gccccgggca tcctcctcca ggacggcgcc acaggcctgt gccttccagg ccgccacatg
     3421 gacatgctca ctgccgcaga caggctgccc actcaagccc ctctgtccac ctcccagagt
     3481 gtgtctggta agaacatgac agcttcccag gggccatgtg ccctcctatg gaagggaggg
     3541 gacagtccag ggcagcagga gcctgggagc ccaaaagcaa aggccccaca gaagagtcag
     3601 aagacgctgg gctgtgcgga caagggcgag gcccacagga ggcccagaac aggggagcag
     3661 ggacacaggt ccaagggacc caggacctct gaagccagtg ggaggagcca ccctgcccaa
     3721 gccagggaaa taggagacaa acaagaaagg aaatacaacc agcttcagct ggagaaggga
     3781 cagacaccac cagaaagcca cttccagaga aagatcagtc accatccaca gggtctacac
     3841 cccaggaaag gaggcacacg gtgggaagat gtcctgcaga aaggcaagcc tggggcagat
     3901 gctttccaga gctgggggtc tggcccacca aggcagttta tggactgcat ggctgacaaa
     3961 gcctggacca tcagcagagt tgtgggacaa atcctggtgg acaaactggg gcttcagtgg
     4021 ggacgaggtc cctcagaggt caatcgccac aaaggtgact tccgcgccca ggagaatgtg
     4081 ccttcctgct gccacagggg tcactgccac caagaacgta gcagagagat gagagctctg
     4141 gcctgcagcc ctaaagccac ccccaagggc caccactgtc ctgtcaaaaa caggggcatc
     4201 agagacagag acagcagttg ggccccacct cccagggagc ctgtgtcccc agctggtccc
     4261 caccaccaca ggccaagaat ggcaagcacc tcgggcggcc cccatccaca gctgcaggaa
     4321 ctgatgtctg cacagaggtg tcttgcctcc tgaactagac cagtcttctt gcatgtctcc
     4381 tgggggagac agggggttct actcaaataa aactgatgcc tacacaataa a
//
