LOCUS       NM_207416               4926 bp    mRNA    linear   PRI 02-APR-2024
DEFINITION  Homo sapiens SPATA31 subfamily D member 3 (SPATA31D3), mRNA.
ACCESSION   NM_207416 XR_041532
VERSION     NM_207416.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4926)
  AUTHORS   Humphray,S.J., Oliver,K., Hunt,A.R., Plumb,R.W., Loveland,J.E.,
            Howe,K.L., Andrews,T.D., Searle,S., Hunt,S.E., Scott,C.E.,
            Jones,M.C., Ainscough,R., Almeida,J.P., Ambrose,K.D., Ashwell,R.I.,
            Babbage,A.K., Babbage,S., Bagguley,C.L., Bailey,J., Banerjee,R.,
            Barker,D.J., Barlow,K.F., Bates,K., Beasley,H., Beasley,O.,
            Bird,C.P., Bray-Allen,S., Brown,A.J., Brown,J.Y., Burford,D.,
            Burrill,W., Burton,J., Carder,C., Carter,N.P., Chapman,J.C.,
            Chen,Y., Clarke,G., Clark,S.Y., Clee,C.M., Clegg,S., Collier,R.E.,
            Corby,N., Crosier,M., Cummings,A.T., Davies,J., Dhami,P., Dunn,M.,
            Dutta,I., Dyer,L.W., Earthrowl,M.E., Faulkner,L., Fleming,C.J.,
            Frankish,A., Frankland,J.A., French,L., Fricker,D.G., Garner,P.,
            Garnett,J., Ghori,J., Gilbert,J.G., Glison,C., Grafham,D.V.,
            Gribble,S., Griffiths,C., Griffiths-Jones,S., Grocock,R., Guy,J.,
            Hall,R.E., Hammond,S., Harley,J.L., Harrison,E.S., Hart,E.A.,
            Heath,P.D., Henderson,C.D., Hopkins,B.L., Howard,P.J., Howden,P.J.,
            Huckle,E., Johnson,C., Johnson,D., Joy,A.A., Kay,M., Keenan,S.,
            Kershaw,J.K., Kimberley,A.M., King,A., Knights,A., Laird,G.K.,
            Langford,C., Lawlor,S., Leongamornlert,D.A., Leversha,M., Lloyd,C.,
            Lloyd,D.M., Lovell,J., Martin,S., Mashreghi-Mohammadi,M.,
            Matthews,L., McLaren,S., McLay,K.E., McMurray,A., Milne,S.,
            Nickerson,T., Nisbett,J., Nordsiek,G., Pearce,A.V., Peck,A.I.,
            Porter,K.M., Pandian,R., Pelan,S., Phillimore,B., Povey,S.,
            Ramsey,Y., Rand,V., Scharfe,M., Sehra,H.K., Shownkeen,R.,
            Sims,S.K., Skuce,C.D., Smith,M., Steward,C.A., Swarbreck,D.,
            Sycamore,N., Tester,J., Thorpe,A., Tracey,A., Tromans,A.,
            Thomas,D.W., Wall,M., Wallis,J.M., West,A.P., Whitehead,S.L.,
            Willey,D.L., Williams,S.A., Wilming,L., Wray,P.W., Young,L.,
            Ashurst,J.L., Coulson,A., Blocker,H., Durbin,R., Sulston,J.E.,
            Hubbard,T., Jackson,M.J., Bentley,D.R., Beck,S., Rogers,J. and
            Dunham,I.
  TITLE     DNA sequence and analysis of human chromosome 9
  JOURNAL   Nature 429 (6990), 369-374 (2004)
   PUBMED   15164053
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL158154.28.
            
            On Aug 13, 2020 this sequence version replaced NM_207416.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DB093356.1, DB093207.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148874
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000445385.3/ ENSP00000488117.1
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-272               AL158154.28        167269-167540
            273-318             AL158154.28        168297-168342
            319-379             AL158154.28        168941-169001
            380-4926            AL158154.28        169316-173862
FEATURES             Location/Qualifiers
     source          1..4926
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9q21.32"
     gene            1..4926
                     /gene="SPATA31D3"
                     /gene_synonym="FAM75D3"
                     /note="SPATA31 subfamily D member 3"
                     /db_xref="GeneID:389762"
                     /db_xref="HGNC:HGNC:38603"
     exon            1..272
                     /gene="SPATA31D3"
                     /gene_synonym="FAM75D3"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..2840
                     /gene="SPATA31D3"
                     /gene_synonym="FAM75D3"
                     /note="FAM75-like protein FLJ44082; Putative FAM75-like
                     protein FLJ44082; putative protein FAM75D3; family with
                     sequence similarity 75, member D3; putative
                     spermatogenesis-associated protein 31D3"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 31D3"
                     /protein_id="NP_997299.2"
                     /db_xref="CCDS:CCDS83380.1"
                     /db_xref="GeneID:389762"
                     /db_xref="HGNC:HGNC:38603"
                     /translation="MENILCFLNSYTETGLSPDSHCLDIDLNFICLSGLGLFILYLFY
                     MVLTLYSSPTEKNNDTQKHQGRARRKRKSVTFKDRKSLQKEAEEERKLHSFLKSFGPP
                     VSCSPLGQHHDTTLFRRLLCPDPVCRVCNRATADIQRLLSWESLKDAAPSVSPLASSA
                     SGAESSFTLASTPSATTPEDLILSSRPKPSPPPPLILSPDLITTLADLFSPSPLRDPL
                     PPQPVSPLDSKFPIDHSPPQQLPFPLLPPHHIERVEPSLQPEASLSLNTIFSFGSTLC
                     QDISQAVNRTDSCARHHGPPTPSALPPEDCTVTQSKSNLTVLKTFPEMLSLGGSGGSS
                     TSAPTTKGIDHSCPASSEFSWWQPHAKDSFSSNFVPSDFMEELLTLHSSEASLGGHSV
                     ANIIQPVNISFLSHDIPALLERQVKRRGDFLMWKENGKKPGSFPTQLRPNYQLNSSRN
                     MLTSTAVKHDLAESFPFWASKGKLEWQHIHQQPPYSKCFEDHLEQKYVQLFWGLPSLH
                     SESLHPTVFVQHGRSSMFVFFNGITNTSMSHESPVLPPPQPLFLPSTQPLPLPQTLPR
                     GQSLHLTQVKSLAQPQSPFPALPPSPLFLIRVCGVCFHRPQNEARSLMPSEINHLEWN
                     VLQKVQESVWGLPSVVQKSQEDFCPPAPNPVLVRKSFKVHVPISIIPGDFPLSSEVRK
                     KLEQHIRKRLIQRRWGLPRRIHESLSLLRPQNKISELSVSESIHGPLNISLVEGQRCN
                     VLKKSASSFPRSFHERSSNMLSMENVGNYQGCSQETAPKNHLLHDPETSSEEDLRSNS
                     ERDLGTHMMHLSGNDSGVRLGQKQLENALTVHLSKKFEEINEGRMPGTVHSSWHSVKQ
                     TICLPEKSHSQIKHRNLAALVSEDHRVDTSQEMSFLSSNKQKMLEAHIKSFHMKPILN
                     LSI"
     exon            273..318
                     /gene="SPATA31D3"
                     /gene_synonym="FAM75D3"
                     /inference="alignment:Splign:2.1.0"
     exon            319..379
                     /gene="SPATA31D3"
                     /gene_synonym="FAM75D3"
                     /inference="alignment:Splign:2.1.0"
     exon            380..4926
                     /gene="SPATA31D3"
                     /gene_synonym="FAM75D3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4904..4909
                     /regulatory_class="polyA_signal_sequence"
                     /gene="SPATA31D3"
                     /gene_synonym="FAM75D3"
                     /note="hexamer: AATAAA"
     polyA_site      4926
                     /gene="SPATA31D3"
                     /gene_synonym="FAM75D3"
                     /note="major polyA site"
ORIGIN      
        1 acgctctgtg atgcaggcct gtgcttacag ttaagcctgg gcaccctcag tgctcagttg
       61 cttcaggcag ctgagctatt cagaccatgg agaatatcct ctgttttctg aacagctata
      121 ctgagacagg gctgagccct gactcacatt gtttggatat tgacctcaac ttcatctgct
      181 tgagtgggtt ggggttgttt atactgtact tgttctacat ggtattgacc ctgtattcat
      241 cacccaccga aaaaaataat gacacccaaa agcatcaggg cagagccagg aggaaaagaa
      301 aaagcgtgac atttaaagac cggaaaagtt tgcagaagga agcagaagag gaaagaaagc
      361 tacattcttt tctgaaaagc tttggacctc ctgtttcctg cagtcccctg ggccagcatc
      421 atgataccac cctctttcgt cgactgttat gcccagaccc tgtctgtcgg gtgtgtaaca
      481 gagcaactgc tgatatccag cgactgctgt cttgggagtc cctgaaagat gctgctccct
      541 ctgtgtcccc tttggcttct tcagcttctg gggctgagtc atcgttcact ctggcttcca
      601 ccccctcagc aaccactcca gaagacctaa tattgtcctc tcggcctaag ccctctccac
      661 cacccccctt aattctctca cctgacctga tcaccacctt agctgactta ttttcaccct
      721 caccactgag ggaccctctg ccaccacagc ctgtttctcc cttggattcc aagttcccca
      781 tagaccattc cccaccccaa cagcttccct ttccccttct cccaccacat cacattgaga
      841 gagtggagcc cagcctccaa cctgaggcca gtttgtctct gaacaccatc ttttcatttg
      901 gctccaccct atgccaagat atttcccagg ccgtgaatcg cactgattca tgtgctcgtc
      961 atcatggacc accaacccca tctgctttac caccggaaga ttgcactgtg actcagtcta
     1021 aatcaaatct caccgtcttg aagacttttc cggaaatgtt atctctaggt ggctctggtg
     1081 ggtcatccac ctctgcccca acaacgaaag gcattgacca ttcatgccct gcatcttcag
     1141 aattctcctg gtggcagcct catgccaagg actctttttc ctctaatttt gtgccatctg
     1201 atttcatgga ggagcttctt acccttcatt cttctgaggc ctctttaggg gggcactctg
     1261 tggccaacat catacagcct gttaacatct cttttctcag ccatgacatt ccggcactcc
     1321 tggagagaca agtcaaaaga aggggtgatt tcctgatgtg gaaagaaaat ggaaagaaac
     1381 caggatcatt cccaacacaa cttaggccaa actaccaact aaattcctca cggaatatgt
     1441 taacctcaac tgctgttaag catgacttag cagaatcctt tcctttttgg gccagtaaag
     1501 gcaaactaga gtggcagcac atccatcagc agcccccata ttctaagtgt tttgaggacc
     1561 atttagagca aaaatatgtc cagctcttct ggggtctccc atctttgcac agcgagtctc
     1621 tgcatcctac tgtttttgtc caacatggcc gttcctccat gtttgtattc ttcaatggca
     1681 ttacaaatac atctatgtcc catgaatccc cagtacttcc ccctccccaa cctctgttct
     1741 tgcctagtac ccaacctcta cccttgcctc aaaccctgcc ccgaggtcag tccctacatc
     1801 tcactcaggt gaagtccctg gctcaacctc aatctccatt cccagcccta ccacctagtc
     1861 ctctattcct gattagggtg tgtggcgtgt gttttcatag accccagaat gaggcacggt
     1921 ctcttatgcc atctgaaatt aatcatctgg agtggaacgt gttgcagaaa gtgcaggaaa
     1981 gtgtgtgggg tttaccctct gtggttcaaa aatcccagga agacttttgt cctccagctc
     2041 ccaatcctgt attggtcaga aagtccttca aggtccatgt tcccatctcc atcattcctg
     2101 gagattttcc actcagctct gaggtaagga agaaactaga gcaacacatt cgaaagaggc
     2161 tcatccagcg cagatggggc ctgccccgca gaatccatga gtctctgtca ttgctacgtc
     2221 ctcagaacaa aatttcagag ctatctgtgt cagagagcat tcatggtcca ttaaatatct
     2281 ctttggttga gggtcagagg tgcaatgttc taaagaagtc cgcatcaagc ttccctagaa
     2341 gcttccacga gaggagctca aatatgcttt ccatggagaa tgtggggaat tatcagggat
     2401 gcagccagga gactgcccca aaaaaccatc tcttgcatga tccggagaca tcttcagagg
     2461 aggatctgag gtctaactct gagagagacc taggaactca tatgatgcat ctgtcaggga
     2521 atgattcagg ggtgagacta ggtcagaaac aacttgaaaa tgccctgaca gtacatttga
     2581 gcaagaaatt tgaggaaatc aatgagggtc gaatgcctgg gactgtgcat agttcatggc
     2641 actcagtcaa gcagacaata tgtcttcctg agaaatccca cagccaaatt aaacatcgaa
     2701 atttggcagc attggtgagt gaggaccacc gcgttgatac ctcccaggag atgtccttcc
     2761 ttagttccaa caaacaaaag atgttggaag cccatattaa atctttccat atgaagccca
     2821 tattaaatct ttccatatga ggatgctgtg gggccttccc cgcaagatcc gtgaacccac
     2881 agaaatcttc aaatcagaag aggatatttc caattccttt tcccatttct accttccctc
     2941 ctcagccagc tttatttctc agggagattc caaagatggg gtctctaagt cttgtagacg
     3001 aagcactttt caaggagaaa agttgggaac aacaagctca gtccctgtcc ttaatcatcc
     3061 tcagcctgtc tcctcaccta ttggcaaaga agggcagggg accctgagaa gacaattttc
     3121 tgatactgac catgacctta tagagacaga tgccaaagat ggtgcctcca cgccccttag
     3181 aagaggcact acatattttc aaggagaaaa attagaaaca acaagctcat tctccatctt
     3241 gggtcatcct cacctcgtca cctcacctgt tgatcaagaa aagcagggga ccctcagaag
     3301 agaattcgct gatactgacg aggatcttac agaaagtgtc tggacaactg aggatggcag
     3361 acagactttt ctgcccccca cacacagcat catagacgaa gtcagtcaga aacagactgt
     3421 acttgccagt agatgcagtg cagagctgcc catactgcaa gctggagttg gccgtgattc
     3481 aagggataag agagagagtg ccagtaataa tgttaacagg cttcagggca gtagaaagac
     3541 ctttcctgtc accaatgggt cgaaggagat gttcaaggaa gaggagatct gtactcttca
     3601 atcacaaact aggaacaact tgacaaccag caagtcagga agctgcttag tgacaaacgt
     3661 gaaaagaagc acttctcatg aaactgaaat tttcccacca agaatatcag ttcctcaaac
     3721 tcctaaatca tcatatctta aaaatcagat gttgagccag ttaaagttgg tccagaggaa
     3781 gcatagccaa cctcagagcc atttcactgg catgtctctt gccttagata acttgagttc
     3841 caaggactta ctgactcatg cccagggcat ctcgaatcag gacttgggaa cttcccaggt
     3901 gctgcatgtc cacttggagg tcagaggaat ccgtgtggca cagcagcagg agcccagggt
     3961 ccctacgcat gtcttacaga aatgccaagt taagaatttt tcaccagcta caaagagagt
     4021 gagccctcta agacctaatg gaggagagct tggtggaggg gatgcagggc tggggacatc
     4081 ccaactcaga agaaagagcc atgctattca taacaagaca tcaagggagt cgcttgggag
     4141 caaatcttcc ccaaccttga aaacacagcc tcctcctgaa aaccttttcg gaacattgat
     4201 gaagaccttt ttgcagcagt ctaataaacc catcataaca tatggaaaac aagaaagttc
     4261 ctaggaaaag ggtagctcct tgtcatcatc tgtgcagaat agaggtcgag ttaaaagtag
     4321 agctgtcttt actgggacta ttgaagctca gaaaattagg aaagacactg gggagttcat
     4381 agaagagaag ctggggcata gacattgaat agatatcacc tgtccccagg agcccctttc
     4441 ctccccagtg cagcttggga aatctcagaa tgtgccagaa ctgcaggtca gagcagagcc
     4501 tgtccagggc tatccctgca actacatggc tccctcctgc aaagtgacat gtaccaaatc
     4561 ttgcagccaa caagctatct ttgtcggcca gaattatcct gcaatgatta gacagatcat
     4621 agacaaggac agatagcccc aggaagttgg acatttaagg ggaagatatt gtgtcaaagg
     4681 catccccaat ccatgcccca caggaagcct gtgccacagc caaaccccac ttgcagtgtg
     4741 aagtcaacct ggtgcctccg gtcatcctga ccagtgctaa aaacactgtg ttcagtgatg
     4801 tgcctttact aactggacag aaaatacttc caaagcattt gcagggagga aaatttcccc
     4861 ccaaaaaata attaactcct tgttgagaat cttgactctc cccaataaac gttctaataa
     4921 gaataa
//
