LOCUS       NM_001350978            3761 bp    mRNA    linear   PRI 03-OCT-2024
DEFINITION  Homo sapiens SPATA31 subfamily C member 2 (SPATA31C2), transcript
            variant 1, mRNA.
ACCESSION   NM_001350978
VERSION     NM_001350978.3
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3761)
  AUTHORS   Kimura,K., Wakamatsu,A., Suzuki,Y., Ota,T., Nishikawa,T.,
            Yamashita,R., Yamamoto,J., Sekine,M., Tsuritani,K., Wakaguri,H.,
            Ishii,S., Sugiyama,T., Saito,K., Isono,Y., Irie,R., Kushida,N.,
            Yoneyama,T., Otsuka,R., Kanda,K., Yokoi,T., Kondo,H., Wagatsuma,M.,
            Murakawa,K., Ishida,S., Ishibashi,T., Takahashi-Fujii,A.,
            Tanase,T., Nagai,K., Kikuchi,H., Nakai,K., Isogai,T. and Sugano,S.
  TITLE     Diversification of transcriptional modulation: large-scale
            identification and characterization of putative alternative
            promoters of human genes
  JOURNAL   Genome Res 16 (1), 55-65 (2006)
   PUBMED   16344560
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DB076576.1, AL353726.22 and AL080179.1.
            
            On Feb 5, 2021 this sequence version replaced NM_001350978.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR18074969.3352360.1, DC402929.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2149178, SAMEA2158188
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000324915.6/ ENSP00000509734.1
            RefSeq Select criteria :: based on manual assertion, longest
                                      protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-537               DB076576.1         7-543
            538-2499            AL353726.22        23275-25236         c
            2500-3761           AL080179.1         2-1263
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9q22.1"
     gene            1..3761
                     /gene="SPATA31C2"
                     /gene_synonym="FAM75C2"
                     /note="SPATA31 subfamily C member 2"
                     /db_xref="GeneID:645961"
                     /db_xref="HGNC:HGNC:24508"
     exon            1..218
                     /gene="SPATA31C2"
                     /gene_synonym="FAM75C2"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..3434
                     /gene="SPATA31C2"
                     /gene_synonym="FAM75C2"
                     /note="isoform 1 is encoded by transcript variant 1;
                     family with sequence similarity 75, member C2;
                     spermatogenesis-associated protein 31C2; putative
                     spermatogenesis-associated protein 31C2"
                     /codon_start=1
                     /product="putative spermatogenesis-associated protein 31C2
                     isoform 1"
                     /protein_id="NP_001337907.1"
                     /db_xref="CCDS:CCDS94436.1"
                     /db_xref="GeneID:645961"
                     /db_xref="HGNC:HGNC:24508"
                     /translation="MENLPFPLKLLSASSLNTPSSTPWVLDIFLTLVFALGFFFLLLP
                     YFSYLRCDNPPSPSPRKRKRHLVSQRPAGRRGRPRGRMKNHSLRACRECPRGLEETWD
                     LLSQLQSLLGPHLEKGDFGQLSGPDPPGEVGKRTPDGASRSSHEPTEDAAPIVSPLAS
                     PDPRTKHPQDLASTPPPGPMTTSVSSLSASQPPEPSLLLEHPSPEPPALFPHPPRTPD
                     PLACSPPPPKGFTPPPLRDSTLLTPSHCDSVALPLDTVPQSLSPREDLAASVPGISGL
                     GGSNSQVSALSWSQETTKTWCVFNSSVQQDHLSRQRDTTMSPLLFQAQPLSHLEPESQ
                     PFISSTPQFWPTPMAQAEAQAHLQSSFPVLSPAFLSPMKNTGVACPASQNKVQALSLP
                     ETQHPERPLLKKQLEGGLALPSRVQKSQDVFSVSTPNLPQERLTSILPENFPVSPELW
                     RQLEQHMGQRGRIQESLDLMQLQDELPGTSQAKGKPRPWQSSTSTGESSKEAQTVKFQ
                     LERDPCPHLGQILGETPQNLSRGMESFPGKVLGATSEESERNLRKPLRSDSGSDLLRR
                     TERNHIENILKAHMSRKLGQTNEGLIPVSVRRSWLAVNQAFPVSNTHVKTSNLAAPKS
                     RKACVNTAQVLSFLEPCTQQVLGAHIVRFWAKHRWGLPLRVLKPIQCFQLEKVSSLSL
                     IQLAGPSSDTCESGAGSKVEVATFLGEPPMASLRKQVLTKPSVHMPERLQASSPACKQ
                     FQRAPRGIPSSNDHGSLKAPTAGQEGRWPSKPLTYSLTGSTQQSRSLGAQSSRAGETR
                     EAVPQPTVPLGTCMRANLQATSEDVRGFKAPGASKSSLLPRMSVSQDPRKLCLMEEAV
                     SEFEPGKATKSETQPQVSATVVLLPDGQASVVPHASENLASQVPQGHLQSMPTGNMQA
                     SQELCDLMSARRSNMGHKEPRNPNCQGSCKSQSPMFPPTHKRENSRKPNLEKHEEMFQ
                     GLRTPQLTPGRKTEDTRQNEGVQLLPSKKQPPSISHFGENIKQFFQTIFSKKERKPAP
                     VTAESQKTVKNRSCVYGSSAEAERLMTAVGQILEENMSLCHARHASKVNQQRQQFQAP
                     VCGFPCNHRHPFYSEHSRMLSYAASSQQATLKNQSRPNRDRQIRDQ"
     exon            219..294
                     /gene="SPATA31C2"
                     /gene_synonym="FAM75C2"
                     /inference="alignment:Splign:2.1.0"
     exon            295..355
                     /gene="SPATA31C2"
                     /gene_synonym="FAM75C2"
                     /inference="alignment:Splign:2.1.0"
     exon            356..3761
                     /gene="SPATA31C2"
                     /gene_synonym="FAM75C2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttgctaga aagcaatgcg cctattcaca tggagaatct tccctttcct ctaaaattac
       61 ttagtgcctc atcactaaac acccccagct ccacaccatg ggtgttggat atcttcctca
      121 ccttggtgtt tgccctgggg ttcttcttcc tattactccc ctacttctct tacctccgtt
      181 gtgacaaccc accctcacca tcgcctagga agagaaagcg tcatcttgtc tcccagcgtc
      241 cagcagggcg gagggggagg cccagaggca ggatgaaaaa ccacagtctg agagcttgta
      301 gagagtgccc gagaggcctg gaggagactt gggacctgct ttcacaactg cagagcctcc
      361 tggggccaca ccttgaaaaa ggtgactttg gtcagctctc tggtccagac ccgccaggtg
      421 aggtgggcaa aagaacacct gatggagcct cccggtcctc tcatgagcct acggaagacg
      481 ctgctcccat tgtctccccg ttagcttccc cggatcctcg aaccaagcat cctcaggatc
      541 tggcctccac cccaccacca ggcccaatga ccacctcagt ctcctcccta agtgcctccc
      601 agccaccaga accttccctt ctcctagaac atccctcacc cgagccacct gcacttttcc
      661 ctcacccacc acgcactcct gatcctctgg cctgctctcc gcctcctccg aaaggcttca
      721 ctcctcctcc cctgcgggac tccactctgt taacaccatc tcactgtgac tcagtggcac
      781 ttccactgga caccgtccct caaagcttgt ctccacgtga ggatttggcg gcttctgtcc
      841 caggcatctc aggccttggc ggctcaaaca gtcaagtttc tgccctctcc tggtcgcagg
      901 agactaccaa aacctggtgc gtcttcaact cgtcagtcca gcaagatcat ctttcccgcc
      961 aaagggacac tacaatgtcc ccactgcttt tccaggccca gcccctgtcc catctggagc
     1021 ctgagtccca accctttatt tcatccacac cccaattctg gcccacacct atggctcagg
     1081 ccgaggctca ggcccatctt caatcctctt tcccagtcct atctcctgct tttctatccc
     1141 cgatgaagaa cactggagta gcttgccctg cgtcgcagaa taaagtgcaa gctctctccc
     1201 tacctgaaac tcagcaccct gaaaggcctt tgttgaagaa acaactagaa ggtgggttgg
     1261 ctttaccctc tagggtccaa aaatctcagg acgtctttag tgtctccact cctaaccttc
     1321 cccaggaaag actgacatcc attctgcctg agaactttcc agtcagtcct gaactctgga
     1381 gacaactgga gcaacacatg gggcaacgtg gaaggatcca agagtctctg gatctgatgc
     1441 agcttcagga tgaattgcca gggacaagtc aggccaaggg caaacccagg ccctggcagt
     1501 cctccacgtc cacaggtgaa agcagcaagg aggcacagac ggtgaagttc cagctagaga
     1561 gggacccatg cccacatctg gggcaaattc tgggtgagac cccacaaaat ctatccaggg
     1621 gcatggaaag cttcccaggg aaggttctgg gggcgacctc tgaggagtcg gaaaggaacc
     1681 tgaggaagcc cttgaggagt gactcaggaa gtgatttatt aagacgcaca gagaggaatc
     1741 atatagaaaa catcctgaaa gcccacatga gcagaaagtt gggccagacc aacgagggct
     1801 tgatccccgt gagtgtgcgt cgatcctggc ttgctgtcaa ccaggctttt cccgtctcca
     1861 acacccacgt gaaaaccagc aatctagcag ccccgaaaag caggaaagcc tgtgtgaaca
     1921 cagcccaggt gctttccttc cttgagccgt gtactcagca ggtgctggga gcccatattg
     1981 tgaggttttg ggccaaacac aggtggggtc tacccctcag ggtcctcaag cccattcagt
     2041 gctttcaact ggaaaaggtt tcatccttgt cccttataca gcttgctggt ccctcctcag
     2101 acacctgcga atctggggct ggctcaaaag ttgaggtggc cacgttcctt ggagagccac
     2161 caatggcaag tctgagaaag caggtgctga ccaaaccatc tgttcacatg ccagagaggc
     2221 ttcaggcctc ctcacctgca tgtaagcagt tccagagggc cccgcgaggg atcccatctt
     2281 cgaatgatca tgggtccttg aaggctccta cagctggaca ggagggcagg tggccatcta
     2341 agcccctcac atacagcctc acaggcagca cccagcagag caggagctta ggagcccaat
     2401 cttcaagggc tggagagacc agggaggcag tgccacaacc cacagtcccc ttgggaacct
     2461 gtatgagagc aaacctccaa gccacaagtg aggatgtgcg tggtttcaag gctccaggcg
     2521 ccagcaaaag ctctctactc cctagaatgt ctgtctccca agacccaaga aagctgtgtc
     2581 tcatggagga ggctgttagt gaatttgagc ctggaaaggc cacgaagtca gagacccagc
     2641 ctcaagtttc tgccactgtt gtgctccttc cagatgggca agcatctgtt gtgccccatg
     2701 cttcagagaa tttggcttct caagtgcccc agggccatct ccagagcatg cctactggga
     2761 acatgcaggc ttcccaggag ctatgtgacc tcatgtcagc cagaaggagt aacatggggc
     2821 acaaggagcc caggaaccca aactgtcaag gctcatgcaa gagccaaagc ccaatgtttc
     2881 cccctactca caagagggag aactctagga agcccaactt agaaaaacat gaagaaatgt
     2941 ttcaaggatt gaggactcct caacttaccc caggcaggaa aacagaagac acccgtcaga
     3001 atgaaggcgt ccagctactg ccatcaaaga aacagcctcc ttcaataagc cactttggag
     3061 aaaacatcaa gcaatttttt cagacgattt tttcaaagaa agaaaggaag ccagcaccag
     3121 tcactgctga gagccaaaaa acagtaaaaa acagatcatg cgtgtacggc agcagtgctg
     3181 aagctgagag gctcatgaca gcagttggac agatactgga ggagaacatg tcactttgcc
     3241 atgcgcgcca tgcctcgaag gtaaatcagc aaagacagca gtttcaagcc ccagtctgtg
     3301 ggtttccctg caaccacaga cacccgttct actcagaaca cagcagaatg ctgagctatg
     3361 cagccagcag tcaacaagcc actctcaaga accagagtcg tcccaacaga gacagacaaa
     3421 tcagagatca gtagcccttg aaaagtgtcc ggtgcaacaa tgagcaatgg ggcctgcgac
     3481 atccccaact cttgctcccc aagaaagctg tatccccagt cagtccccct cagcaccggc
     3541 cgaagacacc cagtgcctcc agccaccatc accactgacc aaggcactgt ctttttcagg
     3601 gaggtatcta atttggtcag tcacaaattc ctttttagcc ttccctagag aaaaacaagt
     3661 caccaagaaa aaattcactc tatgtagagg aaaagtattt tctctcatgt tagtacacgc
     3721 agaacattta atattccaca atatatacgg ttttttattc a
//
