LOCUS       NM_001145124            3779 bp    mRNA    linear   PRI 01-JUN-2024
DEFINITION  Homo sapiens SPATA31 subfamily C member 1 (SPATA31C1), mRNA.
ACCESSION   NM_001145124 XR_041344 XR_041345
VERSION     NM_001145124.1
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3779)
  AUTHORS   Kimura,K., Wakamatsu,A., Suzuki,Y., Ota,T., Nishikawa,T.,
            Yamashita,R., Yamamoto,J., Sekine,M., Tsuritani,K., Wakaguri,H.,
            Ishii,S., Sugiyama,T., Saito,K., Isono,Y., Irie,R., Kushida,N.,
            Yoneyama,T., Otsuka,R., Kanda,K., Yokoi,T., Kondo,H., Wagatsuma,M.,
            Murakawa,K., Ishida,S., Ishibashi,T., Takahashi-Fujii,A.,
            Tanase,T., Nagai,K., Kikuchi,H., Nakai,K., Isogai,T. and Sugano,S.
  TITLE     Diversification of transcriptional modulation: large-scale
            identification and characterization of putative alternative
            promoters of human genes
  JOURNAL   Genome Res 16 (1), 55-65 (2006)
   PUBMED   16344560
REFERENCE   2  (bases 1 to 3779)
  AUTHORS   Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
            Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
            Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
            Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
            Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
            Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
            Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
            Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
            Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
            Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
            Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S., Watanabe,S.,
            Yosida,M., Hotuta,T., Kusano,J., Kanehori,K., Takahashi-Fujii,A.,
            Hara,H., Tanase,T.O., Nomura,Y., Togiya,S., Komai,F., Hara,R.,
            Takeuchi,K., Arita,M., Imose,N., Musashino,K., Yuuki,H., Oshima,A.,
            Sasaki,N., Aotsuka,S., Yoshikawa,Y., Matsunawa,H., Ichihara,T.,
            Shiohata,N., Sano,S., Moriya,S., Momiyama,H., Satoh,N., Takami,S.,
            Terashima,Y., Suzuki,O., Nakagawa,S., Senoh,A., Mizoguchi,H.,
            Goto,Y., Shimizu,F., Wakebe,H., Hishigaki,H., Watanabe,T.,
            Sugiyama,A., Takemoto,M., Kawakami,B., Yamazaki,M., Watanabe,K.,
            Kumagai,A., Itakura,S., Fukuzumi,Y., Fujimori,Y., Komiyama,M.,
            Tashiro,H., Tanigami,A., Fujiwara,T., Ono,T., Yamada,K., Fujii,Y.,
            Ozaki,K., Hirao,M., Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N.,
            Inagaki,H., Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T.,
            Noguchi,S., Itoh,T., Shigeta,K., Senba,T., Matsumura,K.,
            Nakajima,Y., Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T.,
            Oyama,M., Hata,H., Watanabe,M., Komatsu,T., Mizushima-Sugano,J.,
            Satoh,T., Shirai,Y., Takahashi,Y., Nakagawa,K., Okumura,K.,
            Nagase,T., Nomura,N., Kikuchi,H., Masuho,Y., Yamashita,R.,
            Nakai,K., Yada,T., Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
  TITLE     Complete sequencing and characterization of 21,243 full-length
            human cDNAs
  JOURNAL   Nat Genet 36 (1), 40-45 (2004)
   PUBMED   14702039
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DB065037.1, AK310310.1 and AL353572.13.
            
            On or before Feb 13, 2009 this sequence version replaced
            XR_041345.1, XR_041344.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DC400053.1, DC398610.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            MANE Ensembl match     :: ENST00000706933.1/ ENSP00000516655.1
            RefSeq Select criteria :: based on manual assertion, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 DB065037.1         1-4
            5-2075              AK310310.1         1-2071
            2076-3779           AL353572.13        19957-21660
FEATURES             Location/Qualifiers
     source          1..3779
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9q22.1"
     gene            1..3779
                     /gene="SPATA31C1"
                     /gene_synonym="FAM75C1; SPATA31C2"
                     /note="SPATA31 subfamily C member 1"
                     /db_xref="GeneID:441452"
                     /db_xref="HGNC:HGNC:27846"
     exon            1..218
                     /gene="SPATA31C1"
                     /gene_synonym="FAM75C1; SPATA31C2"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..3596
                     /gene="SPATA31C1"
                     /gene_synonym="FAM75C1; SPATA31C2"
                     /note="family with sequence similarity 75, member C1;
                     spermatogenesis-associated protein 31C2;
                     spermatogenesis-associated protein 31C1"
                     /codon_start=1
                     /product="putative spermatogenesis-associated protein
                     31C1"
                     /protein_id="NP_001138596.1"
                     /db_xref="GeneID:441452"
                     /db_xref="HGNC:HGNC:27846"
                     /translation="MENLPFPLKLLSASSLNTPSSTPWVLDIFLTLVFALGLFFLLLP
                     YFSYLRCDNPPSPSPRKRKRHLVSQRHLVSQCPTGRRGRPRGRMKNHSLRACRECPRG
                     LEETWDLLSQLQSLLGPHLEKGDFGQLSGPDPPGEVGKRTPDGASRSSHEPMEDAAPI
                     VSPLASPDPRTKHPQDLASTPPPGPMTTSVSSLSASQPPEPSLLLERPSPEPPALFPH
                     PPHTPDPLACSPPPPKGFTPPPLRDSTLLTPSHCDSVALPLDTVPQSLSPREDLAASV
                     PAISGLGGSNSQVSALSWSQETTKTWCIFNSSVQQDHLSRQRDTTMSPLLFQAQPLSH
                     LGPESQPFISSTPQFRPTPMAQAEAQAHLQSSFPVLSPAFLSPMKNTGVACPASQNKV
                     QALSLPETQHPERPLLRKQLEGGLALPSRVQKSQDVFSVSTPNLPQERLTSILPENFP
                     VSPELWRQLEQYMGQRGRIQESLDLMQLQDELPGTSQAKGKPRPWQSSTSTGESSKEA
                     QTVKFQLERDPCPHLGQILGETPQNLSRGMESFPGKVLGATSEESERNLRKPLRSDSG
                     SDLLRRTERNHIENILKAHMGRKLGQTNEGLIPVSVRRSWLAVNQAFPVSNTHVKTSN
                     LAAPKSRKACVNTAQVLSFLELCTQQVLEAHIVRFWAKHRWGLPLRVLKPIQCFQLEK
                     VSSLSLIQLAGPSSDTCESGAGSKVEVATLLGEPPMASLRKQVLTKPSVHMPERLQAS
                     SPACKQFQRAPRGIPSSNDHGSLKAPTAGQEGRWPSKPLTYSLKGSTQQSRSLGAQSS
                     RAGETREAVPQPTVPLGTCMRANLQATSEDVRGFKAPGASKSSLLPRMSVSQDPRKLC
                     LMEEAVSEFEPGMATKSETQPQVSAAVVLLPDGQASVVPHASENLASQVPQGHLQSTP
                     TGNMQASQELCDLMSARRSNMGHKEPRNPNCQGSCKSQSPMFPPTHKRENSRKPNLEK
                     HEEMFQGLRTPQLTPGRKTEDTRQNEGVQLLPSKKQPPSISHFGENIKQFFETIFSKK
                     ERKPAPVTAESQKTVKNRSCVYGSSAEAERLMTAVGQIPEENMSLCHARHASKVNQQR
                     QQFQAPVCGFPCNHRHPFYSDHSRMLSYAASSQQATLKNQSRPNRDRQIRDQQPLKSV
                     RCNNEQWGLRHPQLLLPKKAVSPVSPPQHRPKTPSASSHHHH"
     exon            219..312
                     /gene="SPATA31C1"
                     /gene_synonym="FAM75C1; SPATA31C2"
                     /inference="alignment:Splign:2.1.0"
     exon            313..373
                     /gene="SPATA31C1"
                     /gene_synonym="FAM75C1; SPATA31C2"
                     /inference="alignment:Splign:2.1.0"
     exon            374..3779
                     /gene="SPATA31C1"
                     /gene_synonym="FAM75C1; SPATA31C2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttgctaga aagcaatgcg cctattcaca tggagaatct tccctttcct ctaaaattac
       61 ttagtgcctc atcactaaac acccccagct ccacaccatg ggtgttggat atcttcctca
      121 ccttggtgtt tgccctgggg ctcttcttcc tattactccc ctacttctct tacctccgtt
      181 gtgacaaccc accctcacca tcgcctagga agagaaagcg tcatcttgtc tcccagcgtc
      241 atcttgtctc ccagtgtcca acagggcgga gggggaggcc cagaggcagg atgaaaaacc
      301 acagtctgag agcttgtaga gagtgcccga gaggcctgga ggagacttgg gacctgcttt
      361 cacaactgca gagcctcctg gggccacacc ttgaaaaagg tgactttggt cagctctctg
      421 gtccagaccc gccaggtgag gtgggcaaaa gaacacctga tggagcctcc cggtcctctc
      481 atgagcctat ggaagatgct gctcccattg tctccccgtt agcttccccg gatcctcgaa
      541 ccaagcatcc tcaggatctg gcctccaccc caccaccagg cccaatgacc acctcagtct
      601 cctccctaag tgcctcccag ccaccagaac cttcccttct cctagaacgc ccctcacccg
      661 agccacctgc acttttccct cacccaccac acacccctga tcctctggcc tgctctccac
      721 ctcctccgaa aggcttcact cctcctcccc tgcgggactc cactctgtta acaccatctc
      781 actgtgactc agtggcactt ccactggaca ccgtccctca aagcttgtct ccacgtgagg
      841 atttggcggc ttctgtccca gccatctcag gccttggcgg ctcaaacagt caagtttctg
      901 ccctctcctg gtcgcaggag actaccaaaa cctggtgcat cttcaactcg tcagtccagc
      961 aagatcatct ttcccgccaa agggacacca caatgtcccc actgcttttc caggcccagc
     1021 ccctgtccca tctggggcct gagtcccaac cctttatttc atccacaccc caattccggc
     1081 ccacacctat ggctcaggcc gaggctcagg cccatcttca atcctctttc ccagtcctat
     1141 ctcctgcttt tctatccccg atgaagaaca ctggagtagc ttgccctgcg tcgcagaata
     1201 aagtgcaagc tctctcctta cctgaaactc agcaccctga aaggcctttg ttgaggaaac
     1261 aactagaagg tgggttggct ttaccctcta gggtccaaaa atctcaggac gtctttagtg
     1321 tctccactcc taaccttccc caggaaagac tgacatccat tctgcctgag aactttccag
     1381 tcagtcctga actctggaga caactggagc aatacatggg gcaacgtgga aggatccaag
     1441 agtctctgga tctgatgcag cttcaggatg aattgccagg gacaagtcag gccaagggca
     1501 aacccaggcc ctggcagtcc tccacgtcca caggtgaaag cagcaaggag gcacagacgg
     1561 tgaagttcca gctagagagg gacccatgcc cacatctggg gcaaattctg ggtgagaccc
     1621 cacaaaatct atccaggggc atggaaagct tcccagggaa ggttctgggg gcgacctctg
     1681 aggagtcaga aaggaacctg aggaagccct tgaggagtga ctcaggaagt gatttattaa
     1741 gacgcacaga gaggaatcat atagaaaaca tcctgaaagc ccacatgggc agaaagttgg
     1801 gccagaccaa cgagggcttg atccccgtga gtgtgcgtcg atcctggctt gctgtcaacc
     1861 aggcttttcc cgtatccaac acccacgtga aaaccagcaa tctagcagcc ccgaaaagta
     1921 ggaaagcctg tgtaaacaca gcccaggtgc tttccttcct tgagctgtgt actcagcagg
     1981 tgctggaagc ccatattgtg aggttttggg ccaaacacag gtggggtcta cccctcaggg
     2041 tcctcaagcc cattcagtgc tttcaactgg aaaaggtttc atccttgtcc cttatacagc
     2101 ttgctggtcc ctcctcagac acctgcgaat ctggggctgg ctcaaaagtt gaggtggcca
     2161 cgctccttgg agagccacca atggcaagtc tgagaaagca agtgctgacc aaaccatctg
     2221 ttcacatgcc agagaggctt caggcctcct cacctgcatg taagcagttc cagagggccc
     2281 cgcgagggat cccatcttca aatgatcatg ggtccttgaa ggctcctaca gctggacagg
     2341 agggcaggtg gccatctaag cccctcacat acagcctcaa aggcagcacc cagcagagca
     2401 ggagcttagg agcccaatct tcaagggctg gagagaccag ggaggcagtg ccacaaccca
     2461 cagtcccctt gggaacctgt atgagagcaa acctccaagc cacaagtgag gatgtgcgtg
     2521 gtttcaaggc tccaggcgcc agcaaaagct ctctactccc tagaatgtct gtctcccaag
     2581 acccaagaaa gctgtgtctc atggaggagg ctgttagtga atttgagcct ggaatggcca
     2641 cgaagtcaga gacccagcct caagtttctg ccgctgttgt gctccttcca gatgggcaag
     2701 catctgttgt gccccatgct tcagagaatt tggcttctca agtgccccag ggccatctcc
     2761 agagcacgcc tactgggaac atgcaggctt cccaggagct atgtgacctc atgtcagcca
     2821 gaaggagtaa catggggcac aaggagccca ggaacccaaa ctgtcaaggc tcatgcaaga
     2881 gccaaagccc aatgtttccc cctactcaca agagggagaa ctctaggaag cccaacttag
     2941 aaaaacatga agaaatgttt caaggattga ggactcctca acttacccca ggcagaaaaa
     3001 cagaagacac ccgtcagaat gaaggcgtcc agctactgcc atcaaagaaa cagcctcctt
     3061 caataagcca ctttggagaa aacatcaagc aattttttga gacgattttt tcaaagaaag
     3121 aaaggaagcc agcaccagtc actgctgaga gccaaaaaac agtaaaaaac agatcatgcg
     3181 tgtacggcag cagtgctgaa gctgagaggc tcatgacagc agttggacag ataccggagg
     3241 agaacatgtc actttgccat gcgcgccatg cctcgaaggt aaatcagcaa agacagcagt
     3301 ttcaagcccc agtctgtggg tttccctgca accacagaca cccgttctac tcagaccaca
     3361 gcagaatgct gagctatgca gccagcagtc aacaagccac tctcaagaac cagagtcgtc
     3421 ccaacagaga cagacaaatc agagatcagc agcccttgaa aagtgtccgg tgcaacaatg
     3481 agcaatgggg cctgcgacat ccccaactct tgctccccaa gaaagctgta tccccagtca
     3541 gtccccctca gcaccggccg aagacaccca gtgcctccag ccaccatcac cactgaccaa
     3601 ggcactgtct ttttcaggga ggtatctaat ttggtcagtc acaaattcct ttttagcctt
     3661 ccctagagaa aaacaagtca ccaagaaaaa attcactcta tgtagaggaa aagtattttc
     3721 tctcatgtta gtacacgcag aacatttaat attccacaat atatacggtt ttttattca
//
