LOCUS       NM_001085452            4259 bp    mRNA    linear   PRI 10-FEB-2024
DEFINITION  Homo sapiens SPATA31 subfamily A member 1 (SPATA31A1), mRNA.
ACCESSION   NM_001085452 XM_005276332 XM_934260
VERSION     NM_001085452.4
KEYWORDS    RefSeq; MANE Select.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4259)
  AUTHORS   Zuo,Y., Gao,J., Yeung,W.S. and Lee,K.F.
  TITLE     The testis-specific VAD1.3/AEP1 interacts with beta-actin and
            syntaxin 1 and directs peri-nuclear/Golgi expression with bipartite
            nucleus localization (BNL) sequence
  JOURNAL   Biochem Biophys Res Commun 401 (2), 275-280 (2010)
   PUBMED   20850414
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX005214.7 and AI023217.1.
            
            On May 17, 2019 this sequence version replaced NM_001085452.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK302569.1, BC146855.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968968, SAMEA2148093
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            MANE Ensembl match               :: ENST00000377647.6/
                                                ENSP00000366875.5
            RefSeq Select criteria           :: based on expression, longest
                                                protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-251               BX005214.7         53460-53710
            252-309             BX005214.7         54923-54980
            310-370             BX005214.7         55549-55609
            371-4257            BX005214.7         55865-59751
            4258-4259           AI023217.1         5-6                 c
FEATURES             Location/Qualifiers
     source          1..4259
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /map="9p12"
     gene            1..4259
                     /gene="SPATA31A1"
                     /gene_synonym="C9orf36; C9orf36A; FAM75A1; FAM75A2;
                     SPATA31A2"
                     /note="SPATA31 subfamily A member 1"
                     /db_xref="GeneID:647060"
                     /db_xref="HGNC:HGNC:23394"
     exon            1..251
                     /gene="SPATA31A1"
                     /gene_synonym="C9orf36; C9orf36A; FAM75A1; FAM75A2;
                     SPATA31A2"
                     /inference="alignment:Splign:2.1.0"
     CDS             63..4106
                     /gene="SPATA31A1"
                     /gene_synonym="C9orf36; C9orf36A; FAM75A1; FAM75A2;
                     SPATA31A2"
                     /note="protein FAM75A1; family with sequence similarity
                     75, member A1; protein FAM75A2; SPATA31 subfamily A,
                     member 2; family with sequence similarity 75, member A2;
                     spermatogenesis-associated protein 31A2"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 31A1"
                     /protein_id="NP_001078921.3"
                     /db_xref="CCDS:CCDS43808.3"
                     /db_xref="GeneID:647060"
                     /db_xref="HGNC:HGNC:23394"
                     /translation="MENLPFPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLP
                     YLSYFRCDDPPSPSPGKRKCPVGRRRRPRGRMKNHSLRAGRECPRGLQETSDLLSQLQ
                     SLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAK
                     HPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPDPLACSP
                     PPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSPHEDLVASVPAISGLGGSNSH
                     VSASSRWQETARTSCAFNSSVQQDHLSRHPPETYQMEAGSLFLLSSDGQNAVGIQVTE
                     TAKVNIWEEKENVGSFTDRMTPEKHLNSLRNLAKSLDAEQDTTNPKPFWNMGENSKQL
                     PGPQKLSDPRLWQESFWKNYSQLFWGLPSLHSESLVANAWVTDRSYTLQSPPFLFNEM
                     SNVCPIQRETTMSPLLFQAQPPSHLGPECQPFISSTPQFRPTPMAQAEAQAHLQSSFP
                     VLSPAFPSLIKNTGVACPASQNKVQALSLPETQHPEWPLLRRQLEGRLALPSRVQKSQ
                     DVFSVSTPNLPQESLTSILPENFPVSPELRRQLEQHIKKWIIQHWGNLGRIQESLDLM
                     QLRDESPGTSQAKGKPSPWQSSMSTGESSKEAQKVKFQLERDPCPHLGQILGETPQNL
                     SRDMKSFPRKVLGVTSEESERNLRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQ
                     TNEGLIPVRVRRSWLAVNQALPVSNTHVKTSNLAAPKSGKACVNTAQVLSFLEPCTQQ
                     GLGAHIVRFWAKHRWGLPLRVLKPIQCFKLEKVSSLSLTQLAGPSSATCESGAGSEVE
                     VDMFLRKPPMASLRKQVLTKASDHMPESLLASSPAWKQFQRAPRGIPSWNDHGPLKPP
                     PAGQEGRWPSKPLTYSLTGSTQQSRSLGAQSSKAGETREAVPQCRVPLETCMLANLQA
                     TSEDMHGFEAPGTSKSSLHPRVSVSQDPRKLCLMEEVVNEFEPGMATKSETQPQVCAA
                     VVLLPDGQASVVPHASENLVSQVPQGHLQSMPAGNMRASQELHDLMAARRSKLVHEEP
                     RNPNCQGSCKNQRPMFPPIHKSEKSRKPNLEKHEERLEGLRTPQLTPVRKTEDTHQDE
                     GVQLLPSKKQPPSVSHFGGNIKQFFQWIFSKKKSKPAPVTAESQKTVKNRSCVYSSSA
                     EAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPVCGFPCNHRHLFYSEHGRIL
                     SYAASSQQATLKSQGCPNRDRQIRNQQPLKSVRCNNEQWGLRHPQILHPKKAVSPVSP
                     LQHWPKTSGASSHHHHCPRHCLLWEGI"
     exon            252..309
                     /gene="SPATA31A1"
                     /gene_synonym="C9orf36; C9orf36A; FAM75A1; FAM75A2;
                     SPATA31A2"
                     /inference="alignment:Splign:2.1.0"
     exon            310..370
                     /gene="SPATA31A1"
                     /gene_synonym="C9orf36; C9orf36A; FAM75A1; FAM75A2;
                     SPATA31A2"
                     /inference="alignment:Splign:2.1.0"
     exon            371..4259
                     /gene="SPATA31A1"
                     /gene_synonym="C9orf36; C9orf36A; FAM75A1; FAM75A2;
                     SPATA31A2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtccctagt ccccacgggg atgcccagag ctcagttgct tgaaagcaac gcgcctattc
       61 acatggagaa tcttcccttt cctttaaaat tacttagtgc ctcatcgcta aacgccccca
      121 gttccacacc atgggtgttg gatatcttcc tcactttggt gtttgccctg gggttcttct
      181 tcctattact cccctactta tcttacttcc gttgtgatga cccaccctca ccatcgcctg
      241 ggaagagaaa gtgtccagta gggcggaggc ggaggcccag aggcaggatg aaaaaccaca
      301 gtctgagagc tggtagagag tgcccgagag gcctgcagga gacttcggac ctgctttcac
      361 aactgcagag cctcctgggg ccacaccttg acaaaggtga ctttggtcag ctctccggtc
      421 cagacccccc aggtgaagtg ggcgaaagag cacctgatgg agcctcccag tcctctcatg
      481 agcctatgga agatgctgct cccattctct ccccgttagc ttccccggat cctcaagcca
      541 agcatcctca ggatctggcc tccaccccat caccaggccc aatgaccacc tcagtctcct
      601 ccctaagtgc ctcccagcca ccagaacctt cccttcccct agaacacccc tcacccgagc
      661 cacctgcact tttccctcac ccaccacaca cccctgatcc tctggcctgc tctccgcctc
      721 ctccaaaagg cttcactgct cctcccctgc gggactccac actgataact ccatctcact
      781 gtgactcagt ggcacttcca ctgggcaccg tccctcaaag cttgtctcca catgaggatt
      841 tggtggcttc tgtcccagcc atctcaggcc ttggtggctc aaacagtcat gtttctgcct
      901 cctcccggtg gcaggagact gccagaacct cgtgcgcctt taactcatca gtccagcaag
      961 atcatctttc ccgccaccca ccagagacct accagatgga agctggtagc ctgtttttgc
     1021 tcagctctga tggccagaat gccgtgggga tacaagtcac agaaacagcc aaggtcaaca
     1081 tttgggaaga aaaagaaaat gttggatcat ttacagatcg aatgacccca gaaaagcact
     1141 taaattcttt gcggaatttg gctaaatcat tggatgctga gcaggacacc acaaacccaa
     1201 aacccttctg gaacatggga gagaactcga aacagctgcc cggacctcag aagctctcag
     1261 atcctaggct ctggcaggaa agtttttgga agaattatag ccagcttttc tggggcctcc
     1321 cctctctgca cagcgagtcc ctggtggcta acgcctgggt aactgacagg tcttatactt
     1381 tacagtctcc tcctttcttg ttcaatgaaa tgtccaatgt ctgcccaatt caaagggaga
     1441 ctacaatgtc cccactgctt ttccaggccc agcccccgtc ccatctgggg cccgagtgcc
     1501 aaccctttat ttcatccaca ccccaattcc ggcccacacc tatggctcag gccgaggctc
     1561 aggcccatct tcaatcttct ttcccagtcc tatctcctgc ttttccatcc ctgattaaga
     1621 acactggagt agcttgccct gcatcgcaga ataaagtgca agctctctcc ctacctgaaa
     1681 ctcagcaccc tgaatggcct ttgttgagga gacaactaga aggtaggttg gctttaccct
     1741 ctagggtcca aaaatctcag gacgtcttta gtgtctccac tcctaacctt ccccaggaaa
     1801 gtttgacatc cattctgcct gagaactttc cagtcagtcc tgaactccgg agacaactgg
     1861 agcaacacat aaaaaagtgg atcatccaac actggggcaa cctgggaagg atccaagagt
     1921 ctctggatct gatgcagctt cgggacgaat caccagggac aagtcaggcc aagggcaaac
     1981 ccagtccctg gcagtcctcc atgtccacag gtgaaagcag caaggaggca cagaaggtga
     2041 agttccagct agagagggac ccgtgcccac atctggggca aattctgggt gagaccccac
     2101 aaaatctatc cagggacatg aaaagcttcc cacggaaggt tctgggggtg acttctgagg
     2161 agtcggaaag gaacttgagg aagcccttga ggagtgactc gggaagtgat ttattaagat
     2221 gcacagagag gactcatata gaaaacatcc tgaaagccca catgggcagg aacttgggcc
     2281 agaccaacga gggcttgatc cccgtgcgtg tgcgtcgatc ctggcttgct gtcaaccagg
     2341 ctcttcccgt gtccaacacc catgtgaaaa ccagcaatct agcagccccg aaaagtggga
     2401 aagcctgtgt gaacacagcc caggtgcttt ccttcctcga gccgtgtact cagcaggggt
     2461 tgggagccca tattgtgagg ttttgggcca aacacaggtg gggtctaccc ctcagggtcc
     2521 tcaagcccat tcagtgcttt aaactggaaa aggtttcatc cttgtccctt acacagcttg
     2581 ctggtccctc ctcagccacc tgtgaatctg gggctggctc agaagttgag gtggacatgt
     2641 tccttagaaa gccaccaatg gcaagtctga gaaagcaggt gctgaccaaa gcatctgatc
     2701 acatgccaga gagtcttctg gcctcctcac ctgcatggaa gcagttccag agggcaccgc
     2761 gaggaatccc atcttggaat gatcatgggc ccttgaagcc tcctccagct ggacaggagg
     2821 gcaggtggcc atctaagccc ctcacgtaca gcctcacagg cagcacccag cagagcagga
     2881 gcttaggagc ccaatcttca aaggctggag agacaaggga ggcagtgcca caatgcagag
     2941 tccccttgga aacctgtatg ctggcaaacc tccaagccac aagtgaggat atgcatggtt
     3001 tcgaggctcc agggaccagc aaaagctctc tacaccctag agtgtctgtc tcccaagatc
     3061 caagaaagct gtgtcttatg gaggaggttg ttaatgaatt tgagcctgga atggccacaa
     3121 agtcagagac ccagcctcaa gtttgtgccg ctgttgtgct ccttccagat gggcaagcat
     3181 ctgttgtgcc ccacgcttca gagaatttgg tttctcaagt gccccagggc catctccaga
     3241 gcatgcctgc tgggaacatg cgggcttccc aggagctaca tgaccttatg gcagccagaa
     3301 ggagcaaact ggtgcacgag gagcccagaa acccaaactg tcaaggctca tgcaagaacc
     3361 aaaggccaat gtttccccct attcacaaga gtgagaagtc taggaagccc aacttagaaa
     3421 aacatgaaga aaggcttgaa ggattgagga ctcctcaact taccccagtc aggaaaacag
     3481 aagacaccca tcaggatgaa ggcgtccagc tactgccatc aaagaaacag cctccttcag
     3541 taagccactt tggaggaaac atcaagcaat tttttcagtg gattttttca aagaaaaaaa
     3601 gcaagccagc accagtcact gctgagagcc aaaaaacagt gaaaaacaga tcatgtgtgt
     3661 acagcagcag tgctgaagct cagggtctca tgacggcagt tggacaaatg ctggacgaga
     3721 aaatgtcact ttgccatgcg cgccatgcct cgaaggtaaa tcagcacaaa cagaagtttc
     3781 aagccccagt ctgtgggttt ccctgcaacc acaggcacct cttctactca gaacacggca
     3841 gaatactgag ctatgcagcc agcagtcaac aagccactct caagagccag ggttgtccca
     3901 acagagacag gcaaatcaga aatcaacagc ccttgaaaag tgtgcggtgc aacaatgagc
     3961 aatggggcct gcgacatccc caaatcttgc accccaagaa agctgtatcc ccagtcagtc
     4021 cccttcagca ctggccgaag acatccggtg cctctagcca ccatcaccac tgtccaaggc
     4081 actgtcttct ttgggaaggt atctgatttg gtcagtcaca aattcttttt tagccttccc
     4141 tggagaaaaa gaagtcccca agaaaaaatt cactctatgt agagaaaaaa tattttctct
     4201 catgttagta catgcagaac atttaatata ccacaatata tatggttttt tattcataa
//
