LOCUS       XM_047429454            7024 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens SRY-box transcription factor 5 (SOX5),
            transcript variant X8, mRNA.
ACCESSION   XM_047429454
VERSION     XM_047429454.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000012.12) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7024
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="12"
     gene            1..7024
                     /gene="SOX5"
                     /gene_synonym="L-SOX5; L-SOX5B; L-SOX5F; LAMSHF"
                     /note="SRY-box transcription factor 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 mRNAs, 5 ESTs, 287 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:6660"
                     /db_xref="HGNC:HGNC:11201"
                     /db_xref="MIM:604975"
     CDS             48..2309
                     /gene="SOX5"
                     /gene_synonym="L-SOX5; L-SOX5B; L-SOX5F; LAMSHF"
                     /codon_start=1
                     /product="transcription factor SOX-5 isoform X8"
                     /protein_id="XP_047285410.1"
                     /db_xref="GeneID:6660"
                     /db_xref="HGNC:HGNC:11201"
                     /db_xref="MIM:604975"
                     /translation="MHVCVQLETIIGGCCDKGKLCFSSMLTDPDLPQEFERMSSKRPA
                     SPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHEVDGNKVMSSFAPHNSSTSPQKA
                     EEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSK
                     DWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAAS
                     QIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPD
                     QRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAA
                     QLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPK
                     TSDGKSPTSPTSPHMPALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAI
                     QEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKF
                     SHAMMDFNLSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQ
                     AFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCL
                     VDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLP
                     SEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYDEEEDDPDVDY
                     GSDSENHIAGQAN"
ORIGIN      
        1 actccctgac cagatgctgc ggtgcacggg gcagccacca tctctgcatg catgtctgtg
       61 ttcagttgga gacgatcata ggtggctgct gtgacaaagg gaaattgtgc ttttccagca
      121 tgcttactga ccctgattta cctcaggagt ttgaaaggat gtcttccaag cgaccagcct
      181 ctccgtatgg ggaagcagat ggagaggtag ccatggtgac aagcagacag aaagtggaag
      241 aagaggagag tgacgggctc ccagcctttc accttccctt gcatgaagtt gatggcaata
      301 aagttatgtc ttcatttgcc ccacacaact catctacctc acctcagaag gcagaagaag
      361 gtgggcgaca gagtggcgag tccttgtcta gtacagccct gggaactcct gaacggcgca
      421 agggcagttt agctgatgtt gttgacacct tgaagcagag gaaaatggaa gagctcatca
      481 aaaacgagcc ggaagaaacc cccagtattg aaaaactact ctcaaaggac tggaaagaca
      541 agcttcttgc aatgggatcg gggaactttg gcgaaataaa agggactccc gagagcttag
      601 ctgagaaaga aaggcaactc atgggtatga tcaaccagct gaccagcctc cgagagcagc
      661 tgttggctgc ccacgatgag cagaagaaac tagctgcctc tcagattgag aaacagcgtc
      721 agcaaatgga gctggccaag cagcaacaag aacaaattgc aagacagcag cagcagcttc
      781 tacagcaaca acacaaaatc aatttgctcc agcaacagat ccagcaggtt caaggtcagc
      841 tgccgccatt aatgattccc gtattccctc ctgatcaacg gacactggct gcagctgccc
      901 agcaaggatt cctcctccct ccaggcttca gctataaggc tggatgtagt gacccttacc
      961 ctgttcagct gatcccaact accatggcag ctgctgccgc agcaacacca ggcttaggcc
     1021 cactccaact gcagcagtta tatgctgccc agctagctgc aatgcaggta tctccaggag
     1081 ggaagctgcc aggcataccc caaggcaacc ttggtgctgc tgtatctcct accagcattc
     1141 acacagacaa gagcacaaac agcccaccac ccaaaagcaa ggatgaagtg gcacagccac
     1201 tgaacctatc agctaaaccc aagacctctg atggcaaatc acccacatca cccacctctc
     1261 cccatatgcc agctctgaga ataaacagtg gggcaggccc cctcaaagcc tctgtcccag
     1321 cagcgttagc tagtccttca gccagagtta gcacaatagg ttacttaaat gaccatgatg
     1381 ctgtcaccaa ggcaatccaa gaagctcggc aaatgaagga gcaactccga cgggaacaac
     1441 aggtgcttga tgggaaggtg gctgttgtga atagtctggg tctcaataac tgccgaacag
     1501 aaaaggaaaa aacaacactg gagagtctga ctcagcaact ggcagttaaa cagaatgaag
     1561 aaggaaaatt tagccatgca atgatggatt tcaatctgag tggagattct gatggaagtg
     1621 ctggagtctc agagtcaaga atttataggg aatcccgagg gcgtggtagc aatgaacccc
     1681 acataaagcg tccaatgaat gccttcatgg tgtgggctaa agatgaacgg agaaagatcc
     1741 ttcaagcctt tcctgacatg cacaactcca acatcagcaa gatattggga tctcgctgga
     1801 aagctatgac aaacctagag aaacagccat attatgagga gcaagcccgt ctcagcaagc
     1861 agcacctgga gaagtaccct gactataagt acaagcccag gccaaagcgc acctgcctgg
     1921 tggatggcaa aaagctgcgc attggtgaat acaaggcaat catgcgcaac aggcggcagg
     1981 aaatgcggca gtacttcaat gttgggcaac aagcacagat ccccattgcc actgctggtg
     2041 ttgtgtaccc tggagccatc gccatggctg ggatgccctc ccctcacctg ccctcggagc
     2101 actcaagcgt gtctagcagc ccagagcctg ggatgcctgt tatccagagc acttacggtg
     2161 tgaaaggaga ggagccacat atcaaagaag agatacaggc cgaggacatc aatggagaaa
     2221 tttatgatga gtacgacgag gaagaggatg atccagatgt agattatggg agtgacagtg
     2281 aaaaccatat tgcaggacaa gccaactgat aagggtcaaa agattgttgt gaccttagga
     2341 cttaaagaag ccctaactgg ttcatcctta ccagtggcca agcacattaa ctttctcata
     2401 cactgactgt tactttaact gttagtctta aatagttggg acatcagctg actaatagac
     2461 ctcagcctca aaaggcttgg aaagaaaaaa caaatacaac aagcaaacaa caatatcaac
     2521 aacaagagat tgaaataagc tatgggtaaa ataatgccag taattcagct gctacatcca
     2581 agcactgaag tcttacccgt caactttttt ttttttttaa ataaacttta tggctgtttg
     2641 ttctacaatg ttctagaaat tctcactcag gtacacagtg ccaacaagtg gcttgtgaat
     2701 gtgttttgtt gttttgtgct acaattttta aaaagaaaaa agttttgttt tgttttttgg
     2761 ggtttctggg ttttttcctt ttctttttct ttcctttcat tttttttctt tgtaatgcac
     2821 ctgacagaaa aaaaagaaaa atgaatttct ctttacttct ctccaccttc tccatctctc
     2881 tactttaaag atggaagtct gtgcatgagg ggaaagaggg aaaaagagcc tgtttttaac
     2941 ttccttgcta tccaccacaa aataagcaat tattttcttt agaggacttt atctattgca
     3001 caccacacta catctttgag caagtgccaa atttgtactg aagtgttgac caagttcatt
     3061 ttttctcttt actttttcct tttccttctt aagttaggac agtgttaaat cttagacaat
     3121 cccttgaaaa acctgaaata ccagcagctg gtgagatttg actttttttt ttaatggaaa
     3181 ctgtaggtgc tgttctcagg tgaaaagaga gagagagaga gagacataag aaatttagag
     3241 aaaaatattt tctgatcttg gatttttgtg tgtatgtatg tatgtgatta tggtactaat
     3301 aataggaata acgttggacc attgtgagtt aaacccacat ctggggatga aatcccacat
     3361 cctcccaagt gactggtcta gaaataatct tgaccttgac tttgcacttc aaatgacaac
     3421 ttaaccaagt atagggctca gaaattatat ttttaaatgt ctgattatta ttggatggat
     3481 caggtggccc tgtgtaatag aggtgtgcat gtataacatg gaagctacta gcaaactgct
     3541 cccagatgtc ctttctccct ggtcagttgg ttccattaac gtttgctact tagtgatttt
     3601 tgtttttcct gttgatattt tgagcaaaac aatcattgtt ttcattgaat atatttggcc
     3661 attttttcag acaaatagaa ttagcttatt tcttcaacat tccatccttt cccgatcagg
     3721 aaatgaaact gatgatttta taaggtattt ttcacccctc catgaagtga ggtggaggcc
     3781 tttagcattt cagaagtgtg ggccatatgt agttcatgcc ataaaaagta ggatttaatt
     3841 aaaagtcatt gcagcccaat aaaatggagc ctggctgcac ccagggatcc ttgccactgc
     3901 tcttcccttg ctgtcagatt aatccactga agtccaactt tggttcaagc agagtatttg
     3961 caaagagcaa caactgaatg tgatgggact gcttatgtag attttgccag ccaaatgcca
     4021 aggcagttgt agggcctgta caaataaatg caaaatcatt tcaagtcaat tgccattatt
     4081 tgtattgaag tatcagatag atagtaaata ctgcaactag tagcttgatg tgctatagtt
     4141 ttcactccag tcatcatttt cctatctcac cccccgaaac accaccctaa agttggattt
     4201 ttacatataa ataaaaaaag aatccctttt atttttctct ctctcagaag acttgctctg
     4261 gggttttgct tggaggagct gatcatatcc tgcatgtcag agatttcatt ttgtttgttt
     4321 ttctgtttgt ttgtttttga tgactttatt tacatttgaa ctgcctcttt ttgctagtgt
     4381 tgtaatgatg atgatgataa aataataata ataatagtaa taataataat aatggtcagc
     4441 tgttcccaga ttagtaagtt atgtataatt tattttattt ctccctttct attttattct
     4501 gctctgattt ggaagtgcag ccaataagct gttagatatt taaaacaaat ttccatctcc
     4561 aactcatata tgtatgtata tgtatatata tatatacata tatatacaca catatacaca
     4621 cacacacaca catttaccca caattttact tctctttccg taagttttct cttttttaag
     4681 aattttggcc ccaacaatat cagttctgat gtttaaaaca aaggagtgaa ttaataggag
     4741 ggtcgtgttc aatcttaatt aacttatgct ctcatcactc attttagtta tttaattgcc
     4801 acagtcatct agagccaatt tttttttgtt tttgtttgtt ttgtttttaa gcactctgga
     4861 taaggaaaaa atagacactt gtttttatat catttttatg tacaatgtga aaacagattt
     4921 ttaaaaaatt tgttctctgt ctttgttaac aaattccttc cgatttatgt gggttcacct
     4981 ctcacgtttg ctggatactt actttacacc atgttatgaa agatgctttg ttttcatttc
     5041 atgagtttgg gctacaagaa tactttgttt tagctccagg tagatgccat tgaaggcatt
     5101 catggctgaa atcaattcta acacacttac cgatgaattg acaacacttt ggtgtttggt
     5161 cttttttttg ttatattttg ttttatttga aggggaaaac aaaattgtta atggtgactt
     5221 ttaactgctg aaattcaaaa tttgatttta gttaggttta tgtccgagac taaactgtgc
     5281 atgaaccgaa acaaaaagca agttcatacc gctgcattct gttctcttgt tctgacggtt
     5341 aattcactgg acatcaaatt ttctttgccc tagttttccc caaaagaaaa caaaagcaaa
     5401 aatagttata ttaatgttga aagtgctttg aagtcacttg ataaaaggtg ctatgaatag
     5461 caacttactg tgttactaca ttgccttttt ggcattggtt gatttataat tttggtaaag
     5521 gatcctaaaa ccctgtattc tttttctgtg ccccataatg accaaaaaag ataaagaaaa
     5581 tgagagtaag atcaaaagat caaactaaaa cataaacagt ctccttcctg tctgctttct
     5641 tacctatctg ttcacacttt atctctttcc ctttctctct ctctctcaca tgcgcgcgcg
     5701 cgcgcgcgca cacacacaca cacacacact tgccccaaca ctgagaaata atcttgccag
     5761 aattctggtt tttatagttg ttgtagtccg tttctctaaa aatagtcctg ttttcatatg
     5821 aatctaagag aacattaccg gagaaaataa agttactcat ttatagttac taataataag
     5881 ttagtgatta acttaccaca attggataaa atataaaact attcttcagc acatttatac
     5941 ctaaattagt gaagtccatt tgtgaagttc atttggcatc tgcagttaag agttaaccat
     6001 gtataaaatc cctcccaaag aacataatca tcgttagaac caaatcctct tataaagaac
     6061 aaatataaaa aagttttctg tggtgaagct attttataga tttgatttcc ggagtagaat
     6121 tttaccttaa ttcacttaaa gaaaattaac cattttttgg tccaacttca gatattttct
     6181 taatccagaa gctgtgactg ttcccagaag aaacctctta tatcacattt aaaacataaa
     6241 aaataattac actttcactc attctaatgg gtaaattgtt gaattgtaat aaacaactgt
     6301 atatttacaa acaggtttat aaggtatttg tctatcaaat taataataaa ataaaactta
     6361 cggggtctgc aaggaaaact atgaaggcca cttaaagtgg ttcaggtatc cctttgtctt
     6421 gtagggcata gctgttggtt tagccaggct tttacagtat ttaattttaa agtatcctat
     6481 aactatcaac ttcccaggtt gaagacgatg tgttgagttt cctactgatt gattgattcc
     6541 tgtcctcccc agtgtttccg tcactggttc actaaaacag tatttatata gctccactgg
     6601 ctctaaagct cttagtcctt ctaatatttt ggattttaca agtaaaaatg gaaaaaaaat
     6661 agaaaagaga caatcaaatg cctggagctt aaaacaaagt atgtgcaacc taccatctca
     6721 cttgaaattt aataaaataa taagtaatta tgtaaatata acatagagtt atagatttat
     6781 attttgttca taacacatag tgtaatataa gttgtatatt ttcatgtttt tggttttatg
     6841 ttatcattca tgccacaata aaaataaaac aggagtttat gtgctcttaa aaaaaagatg
     6901 tgggttgcca ccaacctgtt tttcgttttt gttttttgtt tattttattt tatttttttg
     6961 cattctcctt tttcagtatt actgccatgc aaggcaccaa taaaaacagc aaatgtgttc
     7021 ttta
//
