LOCUS       XM_047418968            5188 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens sine oculis binding protein homolog (SOBP),
            transcript variant X8, mRNA.
ACCESSION   XM_047418968
VERSION     XM_047418968.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5188
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..5188
                     /gene="SOBP"
                     /gene_synonym="JXC1; MRAMS"
                     /note="sine oculis binding protein homolog; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 11 ESTs, 18 long SRA reads, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     7 samples with support for all annotated introns"
                     /db_xref="GeneID:55084"
                     /db_xref="HGNC:HGNC:29256"
                     /db_xref="MIM:613667"
     CDS             181..2025
                     /gene="SOBP"
                     /gene_synonym="JXC1; MRAMS"
                     /codon_start=1
                     /product="sine oculis-binding protein homolog isoform X6"
                     /protein_id="XP_047274924.1"
                     /db_xref="GeneID:55084"
                     /db_xref="HGNC:HGNC:29256"
                     /db_xref="MIM:613667"
                     /translation="MDIFYKETQANLPAGLCSTLHPPMENKAEGTGVQLLTPDSWNIP
                     LTDARRKAPSPVATAGQSQGPGPSASTTVSPSDTANCSVTKIPTPVPKSIPISETPNI
                     PPVSVQPPASIGPPLGVPPRSPPMVMTNRGPVPLPIFMEQQIMQQIRPPFIRGPPHHA
                     SNPNSPLSNPMLPGIGPPPGGPRNLGPTSSPMHRPMLSPHIHPPSTPTMPGNPPGLLP
                     PPPPGAPLPSLPFPPVSMMPNGPMPVPQMMNFGLPSLAPLVPPPTLLVPYPVIVPLPV
                     PIPIPIPIPHVSDSKPPNGFSSNGENFIPNAPGDSAAAGGKPSGHSLSPRDSKQGSSK
                     SADSPPGCSGQALSLAPTPAEHGRSEVVDLTRRAGSPPGPPGAGGQLGFPGVLQGPQD
                     GVIDLTVGHRARLHNVIHRALHAHVKAEREPSAAERRTCGGCRDGHCSPPAAGDPGPG
                     APAGPEAAAACNVIVNGTRGAAAEGAKSAEPPPEQPPPPPPPAPPKKLLSPEEPAVSE
                     LESVKENNCASNCHLDGEAAKKLMGEEALAGGDKSDPNLNNPADEDHAYALRMLPKTG
                     CVIQPVPKPAEKAAMAPCIISSPMLSAGPEDLEPPLKRRCLRIRNQNK"
     polyA_site      5188
                     /gene="SOBP"
                     /gene_synonym="JXC1; MRAMS"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ggtcaaagga tcatggcagt gtgcccatta ttgtaccttt aattccacca cctttcataa
       61 agccaccagc aggtatgtga ctggtgtaag cacataagac acacaaaaga atacctggat
      121 tttggggacg gggaaagaag gcttcagttc tgcagtgcaa aatgtctcaa tcaatacaaa
      181 atggacattt tctacaaaga gacccaggcc aatcttccag ctgggctgtg cagcacatta
      241 caccctccca tggaaaataa agcagaaggc accggggtgc agctgctcac tccagactct
      301 tggaatatcc cgctaacaga tgctcggagg aaggccccct ccccggtggc tacagctggc
      361 caaagccagg gccctggccc gtcggcgtcc accaccgtct ctccatctga cactgccaac
      421 tgctctgtca ctaaaatccc cacgccagtg cccaagtcca tccccatcag cgagactcca
      481 aatatccctc ctgtctccgt ccagccacct gctagcatcg ggcctcccct tggcgtcccg
      541 cctcggagcc ctcccatggt gatgaccaac cgcggcccgg tgccgctgcc catcttcatg
      601 gagcagcaga tcatgcagca gatccgcccg cccttcatcc gcgggcctcc gcaccatgcc
      661 tccaacccca acagccccct gtccaacccc atgcttcccg gcatcgggcc cccgcccggt
      721 ggccccagaa acctgggccc cacttccagc cccatgcacc ggcccatgct atcgccccac
      781 atccaccccc cgagcacccc caccatgccc gggaaccccc caggcctgct gcccccgccg
      841 cctccgggcg ccccgctgcc gagtcttccc ttcccgccag tgagcatgat gccaaatggc
      901 ccgatgccgg tgccccagat gatgaatttc gggctgccgt cgcttgcccc gctggtgccg
      961 cccccgaccc tgctcgtgcc gtaccccgtg atcgtgcccc taccggtgcc catccccatc
     1021 cccatcccta tccctcacgt cagcgactcc aagcccccca acgggttctc cagcaacggg
     1081 gagaacttca ttccgaacgc ccctggcgac tccgcggcgg cgggcggcaa gccaagcgga
     1141 cactccctgt ccccccggga ctccaagcag ggctcgtcca agtccgcgga ctcgcccccc
     1201 ggctgctcgg gccaggccct gagcctggcg cccacgcccg ccgagcatgg ccggagcgag
     1261 gtggtggacc tgacgcggcg cgccggcagc cccccgggcc ccccgggcgc gggcggccag
     1321 ctcggcttcc caggcgtgct gcagggcccg caggacggcg tcatcgacct gaccgtgggc
     1381 caccgagccc ggctgcacaa cgtgatccac cgcgcgctgc acgcgcacgt caaggcggag
     1441 cgcgagccga gcgccgcgga gcgcaggacc tgcggcggct gcagggacgg ccactgcagc
     1501 ccgcccgccg ccggcgaccc aggcccgggc gccccggcgg gccccgaggc ggccgcggcc
     1561 tgcaacgtca tcgtgaacgg cacgcgcggc gccgccgccg agggcgctaa gagcgcggag
     1621 ccgcctcccg agcagccgcc gccgccgccg ccgcccgcgc cccccaagaa gctgctgtcg
     1681 cctgaggaac cggcggtgag cgagctagag tcggtcaagg agaataactg tgcttccaac
     1741 tgccacctgg acggggaggc ggccaaaaag ctgatgggcg aggaggccct ggcggggggc
     1801 gacaagtcag acccgaacct taataacccc gcggacgagg accatgccta tgctctgcgg
     1861 atgctgccca agaccggctg cgtgatccag cctgtgccaa aacccgcgga gaaggctgcc
     1921 atggcaccgt gcatcatctc ctcgcccatg ctcagcgccg ggcctgagga cctggagccg
     1981 ccgctcaaaa ggaggtgcct ccgaattaga aatcagaata agtaaaagat gtacccataa
     2041 ccttccatct tcagcaggac tgggactaga gtgaagcaaa ggaagggctt agggcagaga
     2101 ctttgaggag gcacccactc agggtcatgc tagtgcagca ctggtcctgg ctctgtctcc
     2161 agatccatat ggcagctccc taaagctggt ctcctggccc cctggactcg tccctggatg
     2221 gccttcagca actccccctg aaatttcatg gaaagtttta tgtgcctatg cacagaggca
     2281 ttttcatggg agaagacgtc catagatttt ggctccagaa aaagtatgct ctatatctct
     2341 gaaggattat cttaccttat tatggagcaa tatctgagtt gaaatttttc ttgtttctct
     2401 gaggaagctg aattaatgga aagtttctct taaaacttag aatatattgt ttggcaattt
     2461 ctgctgtggg cctaatattg cagaatcaaa gttggagcta catcatgtag cacttgcctc
     2521 aataagattg ccttagtgac acaatgcaaa aggttacaga cttttcttca agttaccatt
     2581 tcccacaagg gcctgtgatg aaagaagaaa agagaagcaa gaaaagaaat aagctagata
     2641 cttccccagc acttggacct tcaaaatttg tacgatacag ggagacactg ttcttctgtg
     2701 gaaagatctt ctactctgcc actgaggcca agaaagcaga atggccagag tcagagaggt
     2761 ggacaggtcg gtgaacacca gggcattgat gtggcagtgt ctgggagcgc tgccaatgct
     2821 ccctagctcc ccagtatgcc tctttacttg gagagactgc acttggaaag agacgcgttc
     2881 ggccagctat taaccagccg ttgcccagga gggcactgga aatcagttcc ctgactggtt
     2941 tccaatgagt cactcccttg ccagcctaag ctgctgcctg tgcaccatgt tcaatcattt
     3001 acacctacct tcatgcagac aagtgctgca gaggggcaga gatgtctgag gaccaaaata
     3061 cgctgcaccg tggaacactt acctcatgtt gtggaacact taccctcacc cgaacgcccc
     3121 gccttttcca gactttcctg tctaagagat cgtgccaaag ggacgggggt ggccatgctg
     3181 ttttctctta ccgtgtcctg cacaacttat tttgtatcct tccgttgccg ttttaagtgc
     3241 atagcacttt ctatgtggat ggatgttaag gcaatgcatt ctgcatgtgt aaactttttc
     3301 ttagggcctc aaagggcata aacgaaattc attcagagaa agaaagaaat tagctttaga
     3361 aaataaacaa tttagcactg gcatcgttta acagggtccc attctcaagg aaatggggta
     3421 aatgccattt cagacaccag ctctgaatac taactgcaga gagttcttct ccagatttgt
     3481 ggatttccac agcacagaaa aaaaaaatag ggtggggtca ggattgggaa catgagacca
     3541 tcaacaggga ggggaagtac acacacatgc acaaaactta tttcaagggt catcgaaaag
     3601 attctagtga aaaatgactg gagcaaaaga aaatgacaat aacaaaaact tggaattatt
     3661 ctctaatgct ttaaaatagt cccaagtgta ctacatagtt taaaattgga aatcagtcaa
     3721 gttacctaac tctgccactc cttggactga attaatgatc ataagcaaaa aatgcttgtg
     3781 caattgtact gtgtggtcca gatgtacagc cctgagtaga gagatggggg cagagcagac
     3841 ctggctttcc aggtagccaa ggggtcaggg ctggggcaaa tcaaagcttc cagtgctccc
     3901 agcctcattc ccatccagat atttggctgc accagcacta gttgtctcat cattttcccc
     3961 tctgaacctc tggtttgttg tctgtctttg atatagtaag ctgtgttttg ttttgggtaa
     4021 aaagggaagt aagaatgtga ctgatagtat ttaaagaaca aaagggagaa acgcttcatg
     4081 aattcatttg atatggaaca ttgacctaac atccaaaaaa atacaactaa aaagtagatc
     4141 tttccctcat ttgcatggct tatttcccca gatatgtttt tggtattgaa aatgaatggt
     4201 attcccatac aacatgtgtc tcaatttgta atgatatcct ccttgcagct ggcttagttc
     4261 tgcaagtgtt tctaaaatgt tactgtctta aatttgaacc aacctacaat aacaaattat
     4321 ctagaagcaa agtggctaaa cggcatttgg agagagaagg ggaaacccta tatttcatcc
     4381 ttcaactctt gttttagaaa ttcagactgt aacgtgatct ttttctaaag aaatctacac
     4441 acacacactt taaaaactgt gcagcttggg tgttgtggga gcaagaatga tcaggtttaa
     4501 gtttctctgc aaagctctgc atcccatcaa caagctcttt tgatatttta aacccgtatt
     4561 tagagtaatt tcaagatatt tggagcacat gtggttacat gtaaaacttt gtccttataa
     4621 tgtgttagat gctcatactt taaatattta taagctttta tttatttatt tatttttatt
     4681 tttttctgag atggagtttc actctgttgc ccggctggag tgcagtgacg cgatctcggc
     4741 ccactataac ctctgccttc tgggttcaag caattctcct gcctcagcct cccaagtagc
     4801 tgggattaca ggcgcgcacc accatgtcca gctaattttt ttttgtattt ttagtagaga
     4861 tggggtttca ccctgttggc taggatggtc tccatctctt gacctcatca tccacctgtc
     4921 taggcctccc aaagtgctgg gattacaggt atgagccacc atgcccagcc tttataagcc
     4981 atttttaagt aatttaccca aaagctttct cccactagaa tactataatt gagtagtatc
     5041 tgagcatcat tatagaagat acaagatgaa gttgctgcag catgcattca cattcttctt
     5101 gcttttctgg ttttaattca aatgtcattt ttagtagaat cagcttattt tattattttt
     5161 taaatgtatt aaaaaatcat aaacaaga
//
