LOCUS       XM_047418962            6342 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens sine oculis binding protein homolog (SOBP),
            transcript variant X2, mRNA.
ACCESSION   XM_047418962
VERSION     XM_047418962.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000006.12) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6342
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
     gene            1..6342
                     /gene="SOBP"
                     /gene_synonym="JXC1; MRAMS"
                     /note="sine oculis binding protein homolog; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 23 long SRA reads, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:55084"
                     /db_xref="HGNC:HGNC:29256"
                     /db_xref="MIM:613667"
     CDS             501..3179
                     /gene="SOBP"
                     /gene_synonym="JXC1; MRAMS"
                     /codon_start=1
                     /product="sine oculis-binding protein homolog isoform X2"
                     /protein_id="XP_047274918.1"
                     /db_xref="GeneID:55084"
                     /db_xref="HGNC:HGNC:29256"
                     /db_xref="MIM:613667"
                     /translation="MAEMEKEGRPPENKRSRKPAHPVKREINEEMKNFAENTMNELLG
                     WYGYDKVELKDGEDIEFRSYPTDGESRQHISVLKENSLPKPKLPEDSVISPYNISTGY
                     SGLATGNGLSDSPAGSKDHGSVPIIVPLIPPPFIKPPAGTVGGDRCPSKYFRNFPSVL
                     DSHESYKGVVNLQFNCLESINALLIFFGHWSEDDVSNVQIMCAWCQKVGIKRYSLSMG
                     SEVKSFCSEKCFAACRRAYFKRNKVCDWCKHIRHTKEYLDFGDGERRLQFCSAKCLNQ
                     YKMDIFYKETQANLPAGLCSTLHPPMENKAEGTGVQLLTPDSWNIPLTDARRKAPSPV
                     ATAGQSQGPGPSASTTVSPSDTANCSVTKIPTPVPKSIPISETPNIPPVSVQPPASIG
                     PPLGVPPRSPPMVMTNRGPVPLPIFMEQQIMQQIRPPFIRGPPHHASNPNSPLSNPML
                     PGIGPPPGGPRNLGPTSSPMHRPMLSPHIHPPSTPTMPGNPPGLLPPPPPGAPLPSLP
                     FPPVSMMPNGPMPVPQMMNFGLPSLAPLVPPPTLLVPYPVIVPLPVPIPIPIPIPHVS
                     DSKPPNGFSSNGENFIPNAPGDSAAAGGKPSGHSLSPRDSKQGSSKSADSPPGCSGQA
                     LSLAPTPAEHGRSEVVDLTRRAGSPPGPPGAGGQLGFPGVLQGPQDGVIDLTVGHRAR
                     LHNVIHRALHAHVKAEREPSAAERRTCGGCRDGHCSPPAAGDPGPGAPAGPEAAAACN
                     VIVNGTRGAAAEGAKSAEPPPEQPPPPPPPAPPKKLLSPEEPAVSELESVKENNCASN
                     CHLDGEAAKKLMGEEALAGGDKSDPNLNNPADEDHAYALRMLPKTGCVIQPVPKPAEK
                     AAMAPCIISSPMLSAGPEDLEPPLKRRCLRIRNQNK"
     polyA_site      6342
                     /gene="SOBP"
                     /gene_synonym="JXC1; MRAMS"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gctctcccgg gctcacacac agccgcgcac gcacgcccgg ggccgctctc cgcgccggcc
       61 cttgctcccc gcgcccatgc ggacggaccg agcgacggaa gatggctgac gactccacgg
      121 ggccccgagg atgcggcccg gcggcggcgg cggcgggagc ggcagcggca gcgagggcgg
      181 caggggcagc ggcagcagcg gcggcgttgg ctgcggcggc ggcggcggcg gcagcaggag
      241 ccggagcgac ggcggcggca tccccgagac tctccgcact atccttaccc gtgacagcca
      301 ctgacgtcct ccgccgctag aagagacccc gcttctcggc gcctgccctc cccctcgcgg
      361 ctcggtccgg ccccgccagc accgctacct ccgccagcct cgccaccatc agcaccacct
      421 ccaccgccgc cgccgccgcc accaccaccg ccggcggcgg cagcagccat ttcatctcca
      481 cagaaaccag acacaaaaac atggcagaaa tggagaaaga agggagacct cccgaaaata
      541 aacggagcag gaagccggct cacccagtga aaagggagat caatgaggag atgaagaact
      601 ttgcagaaaa caccatgaat gaactccttg gctggtatgg ctatgataag gttgaattaa
      661 aagatggtga ggatattgaa ttcaggagct accctacaga tggggagagc cggcagcaca
      721 tttctgttct caaagaaaat tctttgccaa aaccaaaatt acccgaggac agtgttattt
      781 caccatacaa tataagcaca ggctattcag ggcttgccac tggaaatgga ctcagtgact
      841 cacctgcagg gtcaaaggat catggcagtg tgcccattat tgtaccttta attccaccac
      901 ctttcataaa gccaccagca ggaactgttg gaggagatag atgtcccagc aaatactttc
      961 ggaatttccc ctcagtcttg gactcccatg aaagttacaa aggggtggta aatctacagt
     1021 ttaattgcct ggagtccatt aatgccctac tgattttctt tgggcactgg tcagaagatg
     1081 atgtgtcaaa tgtacaaata atgtgtgcct ggtgccagaa agtgggaatc aagcgctatt
     1141 ccctgagtat gggaagtgag gtgaaaagct tctgcagcga gaagtgcttt gcggcctgcc
     1201 gacgagccta cttcaagaga aataaggtat gtgactggtg taagcacata agacacacaa
     1261 aagaatacct ggattttggg gacggggaaa gaaggcttca gttctgcagt gcaaaatgtc
     1321 tcaatcaata caaaatggac attttctaca aagagaccca ggccaatctt ccagctgggc
     1381 tgtgcagcac attacaccct cccatggaaa ataaagcaga aggcaccggg gtgcagctgc
     1441 tcactccaga ctcttggaat atcccgctaa cagatgctcg gaggaaggcc ccctccccgg
     1501 tggctacagc tggccaaagc cagggccctg gcccgtcggc gtccaccacc gtctctccat
     1561 ctgacactgc caactgctct gtcactaaaa tccccacgcc agtgcccaag tccatcccca
     1621 tcagcgagac tccaaatatc cctcctgtct ccgtccagcc acctgctagc atcgggcctc
     1681 cccttggcgt cccgcctcgg agccctccca tggtgatgac caaccgcggc ccggtgccgc
     1741 tgcccatctt catggagcag cagatcatgc agcagatccg cccgcccttc atccgcgggc
     1801 ctccgcacca tgcctccaac cccaacagcc ccctgtccaa ccccatgctt cccggcatcg
     1861 ggcccccgcc cggtggcccc agaaacctgg gccccacttc cagccccatg caccggccca
     1921 tgctatcgcc ccacatccac cccccgagca cccccaccat gcccgggaac cccccaggcc
     1981 tgctgccccc gccgcctccg ggcgccccgc tgccgagtct tcccttcccg ccagtgagca
     2041 tgatgccaaa tggcccgatg ccggtgcccc agatgatgaa tttcgggctg ccgtcgcttg
     2101 ccccgctggt gccgcccccg accctgctcg tgccgtaccc cgtgatcgtg cccctaccgg
     2161 tgcccatccc catccccatc cctatccctc acgtcagcga ctccaagccc cccaacgggt
     2221 tctccagcaa cggggagaac ttcattccga acgcccctgg cgactccgcg gcggcgggcg
     2281 gcaagccaag cggacactcc ctgtcccccc gggactccaa gcagggctcg tccaagtccg
     2341 cggactcgcc ccccggctgc tcgggccagg ccctgagcct ggcgcccacg cccgccgagc
     2401 atggccggag cgaggtggtg gacctgacgc ggcgcgccgg cagccccccg ggccccccgg
     2461 gcgcgggcgg ccagctcggc ttcccaggcg tgctgcaggg cccgcaggac ggcgtcatcg
     2521 acctgaccgt gggccaccga gcccggctgc acaacgtgat ccaccgcgcg ctgcacgcgc
     2581 acgtcaaggc ggagcgcgag ccgagcgccg cggagcgcag gacctgcggc ggctgcaggg
     2641 acggccactg cagcccgccc gccgccggcg acccaggccc gggcgccccg gcgggccccg
     2701 aggcggccgc ggcctgcaac gtcatcgtga acggcacgcg cggcgccgcc gccgagggcg
     2761 ctaagagcgc ggagccgcct cccgagcagc cgccgccgcc gccgccgccc gcgcccccca
     2821 agaagctgct gtcgcctgag gaaccggcgg tgagcgagct agagtcggtc aaggagaata
     2881 actgtgcttc caactgccac ctggacgggg aggcggccaa aaagctgatg ggcgaggagg
     2941 ccctggcggg gggcgacaag tcagacccga accttaataa ccccgcggac gaggaccatg
     3001 cctatgctct gcggatgctg cccaagaccg gctgcgtgat ccagcctgtg ccaaaacccg
     3061 cggagaaggc tgccatggca ccgtgcatca tctcctcgcc catgctcagc gccgggcctg
     3121 aggacctgga gccgccgctc aaaaggaggt gcctccgaat tagaaatcag aataagtaaa
     3181 agatgtaccc ataaccttcc atcttcagca ggactgggac tagagtgaag caaaggaagg
     3241 gcttagggca gagactttga ggaggcaccc actcagggtc atgctagtgc agcactggtc
     3301 ctggctctgt ctccagatcc atatggcagc tccctaaagc tggtctcctg gccccctgga
     3361 ctcgtccctg gatggccttc agcaactccc cctgaaattt catggaaagt tttatgtgcc
     3421 tatgcacaga ggcattttca tgggagaaga cgtccataga ttttggctcc agaaaaagta
     3481 tgctctatat ctctgaagga ttatcttacc ttattatgga gcaatatctg agttgaaatt
     3541 tttcttgttt ctctgaggaa gctgaattaa tggaaagttt ctcttaaaac ttagaatata
     3601 ttgtttggca atttctgctg tgggcctaat attgcagaat caaagttgga gctacatcat
     3661 gtagcacttg cctcaataag attgccttag tgacacaatg caaaaggtta cagacttttc
     3721 ttcaagttac catttcccac aagggcctgt gatgaaagaa gaaaagagaa gcaagaaaag
     3781 aaataagcta gatacttccc cagcacttgg accttcaaaa tttgtacgat acagggagac
     3841 actgttcttc tgtggaaaga tcttctactc tgccactgag gccaagaaag cagaatggcc
     3901 agagtcagag aggtggacag gtcggtgaac accagggcat tgatgtggca gtgtctggga
     3961 gcgctgccaa tgctccctag ctccccagta tgcctcttta cttggagaga ctgcacttgg
     4021 aaagagacgc gttcggccag ctattaacca gccgttgccc aggagggcac tggaaatcag
     4081 ttccctgact ggtttccaat gagtcactcc cttgccagcc taagctgctg cctgtgcacc
     4141 atgttcaatc atttacacct accttcatgc agacaagtgc tgcagagggg cagagatgtc
     4201 tgaggaccaa aatacgctgc accgtggaac acttacctca tgttgtggaa cacttaccct
     4261 cacccgaacg ccccgccttt tccagacttt cctgtctaag agatcgtgcc aaagggacgg
     4321 gggtggccat gctgttttct cttaccgtgt cctgcacaac ttattttgta tccttccgtt
     4381 gccgttttaa gtgcatagca ctttctatgt ggatggatgt taaggcaatg cattctgcat
     4441 gtgtaaactt tttcttaggg cctcaaaggg cataaacgaa attcattcag agaaagaaag
     4501 aaattagctt tagaaaataa acaatttagc actggcatcg tttaacaggg tcccattctc
     4561 aaggaaatgg ggtaaatgcc atttcagaca ccagctctga atactaactg cagagagttc
     4621 ttctccagat ttgtggattt ccacagcaca gaaaaaaaaa atagggtggg gtcaggattg
     4681 ggaacatgag accatcaaca gggaggggaa gtacacacac atgcacaaaa cttatttcaa
     4741 gggtcatcga aaagattcta gtgaaaaatg actggagcaa aagaaaatga caataacaaa
     4801 aacttggaat tattctctaa tgctttaaaa tagtcccaag tgtactacat agtttaaaat
     4861 tggaaatcag tcaagttacc taactctgcc actccttgga ctgaattaat gatcataagc
     4921 aaaaaatgct tgtgcaattg tactgtgtgg tccagatgta cagccctgag tagagagatg
     4981 ggggcagagc agacctggct ttccaggtag ccaaggggtc agggctgggg caaatcaaag
     5041 cttccagtgc tcccagcctc attcccatcc agatatttgg ctgcaccagc actagttgtc
     5101 tcatcatttt cccctctgaa cctctggttt gttgtctgtc tttgatatag taagctgtgt
     5161 tttgttttgg gtaaaaaggg aagtaagaat gtgactgata gtatttaaag aacaaaaggg
     5221 agaaacgctt catgaattca tttgatatgg aacattgacc taacatccaa aaaaatacaa
     5281 ctaaaaagta gatctttccc tcatttgcat ggcttatttc cccagatatg tttttggtat
     5341 tgaaaatgaa tggtattccc atacaacatg tgtctcaatt tgtaatgata tcctccttgc
     5401 agctggctta gttctgcaag tgtttctaaa atgttactgt cttaaatttg aaccaaccta
     5461 caataacaaa ttatctagaa gcaaagtggc taaacggcat ttggagagag aaggggaaac
     5521 cctatatttc atccttcaac tcttgtttta gaaattcaga ctgtaacgtg atctttttct
     5581 aaagaaatct acacacacac actttaaaaa ctgtgcagct tgggtgttgt gggagcaaga
     5641 atgatcaggt ttaagtttct ctgcaaagct ctgcatccca tcaacaagct cttttgatat
     5701 tttaaacccg tatttagagt aatttcaaga tatttggagc acatgtggtt acatgtaaaa
     5761 ctttgtcctt ataatgtgtt agatgctcat actttaaata tttataagct tttatttatt
     5821 tatttatttt tatttttttc tgagatggag tttcactctg ttgcccggct ggagtgcagt
     5881 gacgcgatct cggcccacta taacctctgc cttctgggtt caagcaattc tcctgcctca
     5941 gcctcccaag tagctgggat tacaggcgcg caccaccatg tccagctaat ttttttttgt
     6001 atttttagta gagatggggt ttcaccctgt tggctaggat ggtctccatc tcttgacctc
     6061 atcatccacc tgtctaggcc tcccaaagtg ctgggattac aggtatgagc caccatgccc
     6121 agcctttata agccattttt aagtaattta cccaaaagct ttctcccact agaatactat
     6181 aattgagtag tatctgagca tcattataga agatacaaga tgaagttgct gcagcatgca
     6241 ttcacattct tcttgctttt ctggttttaa ttcaaatgtc atttttagta gaatcagctt
     6301 attttattat tttttaaatg tattaaaaaa tcataaacaa ga
//
