LOCUS       XM_047431289            6915 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens sorting nexin 27 (SNX27), transcript
            variant X3, mRNA.
ACCESSION   XM_047431289
VERSION     XM_047431289.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000001.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6915
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
     gene            1..6915
                     /gene="SNX27"
                     /gene_synonym="MRT1; MY014"
                     /note="sorting nexin 27; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 24 ESTs, 3977 long SRA reads, 3 Proteins, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 23 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:81609"
                     /db_xref="HGNC:HGNC:20073"
                     /db_xref="MIM:611541"
     CDS             153..1436
                     /gene="SNX27"
                     /gene_synonym="MRT1; MY014"
                     /codon_start=1
                     /product="sorting nexin-27 isoform X3"
                     /protein_id="XP_047287245.1"
                     /db_xref="GeneID:81609"
                     /db_xref="HGNC:HGNC:20073"
                     /db_xref="MIM:611541"
                     /translation="MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVV
                     RIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVYNVYMAGRQLCSKRYREFAIL
                     HQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEF
                     LSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFA
                     LFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAV
                     TYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACD
                     SRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARG
                     EKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY"
ORIGIN      
        1 accccgcgcc agcagctcgg tggccgagtc ggtcccgcgg ccggcggatc gggcgcgcgc
       61 gtcgggggtc gtccggctgc caggcagggc gagcacgcgc cgggaggcct tggaggcgta
      121 gggggcgggg gtacggctcg cctgctcgca agatggcgga cgaggacggg gaagggattc
      181 atccctcagc ccctcacagg aacggaggtg gcggcggcgg cggggggtct gggctccact
      241 gcgccgggaa cggcggcggg ggaggcggcg gcccgcgggt cgtgcgcatc gtcaagtccg
      301 agtccggcta cggcttcaac gtgcggggcc aagtgagcga gggcgggcaa ctgcggagca
      361 tcaacgggga gctgtacgcg ccgctgcagc atgtatataa tgtttacatg gcagggaggc
      421 agctgtgttc taagcggtac cgggagtttg ctatcctaca ccagaacctg aagagagagt
      481 ttgccaactt tacatttcct cgactcccag ggaagtggcc attttcatta tcagaacaac
      541 aattagatgc ccgacgtcgg ggattggaag aatatctaga aaaagtgtgt tcaatacgag
      601 taattggtga gagtgacatc atgcaggaat tcctatcaga atccgatgag aactacaatg
      661 gtgtgtccga cgtagagctg agagtagcat taccagatgg aacaacggtt acagtcaggg
      721 ttaaaaagaa cagtactaca gaccaagtat atcaggctat cgcagcaaag gttggcatgg
      781 acagtacgac agtgaattac tttgccttat ttgaagtgat cagtcactcc tttgtacgta
      841 aattggcacc taatgagttt cctcacaaac tctacattca gaattataca tcagctgtgc
      901 caggcacctg cttgaccatt cgaaagtggc tttttacaac agaagaagaa attctcttaa
      961 atgacaatga ccttgctgtt acctacttct ttcatcaggc agtcgatgat gtgaagaaag
     1021 gttacatcaa agcagaagaa aagtcctatc aattacagaa gctatacgaa caaagaaaaa
     1081 tggtcatgta cctcaacatg ctaaggactt gtgagggcta caatgaaatc atctttcccc
     1141 actgtgcctg tgactccagg aggaaggggc acgttatcac agccatcagc atcacgcact
     1201 ttaaactgca tgcctgcact gaagaaggac agctggagaa ccaggtaatt gcatttgaat
     1261 gggatgagat gcagcgatgg gacacagatg aagaagggat ggccttctgt ttcgaatatg
     1321 cacgaggaga gaagaagccc cgatgggtta aaatcttcac gccatatttc aattacatgc
     1381 atgagtgctt cgagagggtg ttctgcgagc tcaagtggag aaaagaggaa tattagttag
     1441 agactgatta tctcatgtga gccaggacat tcttccagca aggttggcct ctggatggtg
     1501 aacgggctgt gcaaaaaagc cctgcttctt cccttgtcta gagggtggac attggctaca
     1561 ggctcttcca tctctcatga cttcatggac cctcctctgc cagtttttta aatcagatca
     1621 ccctccatgt tgttcctgac ccacagggga agctgtcctc agttgtagcc gtcttgactg
     1681 gatgagtcct ggcagtcttt ctaggcgaac caagaatgtt tgtgtgaggg aaggtgtttg
     1741 ctgttgcttt actgctgtct gtatgtgcca gtgctggaac agaatttgga agattctgaa
     1801 taattagtta cttattctca aagaaaatct ttgaaagaat caggaggtca agtcaagaac
     1861 atgaaaattt atattttagt acagtagaaa gaacattggg ctctgggaat tttatctggg
     1921 ttttctcctg gctttttttt ccctctgtgt aattttgggt aaatcagcct ccctagcttt
     1981 cagttttctc ttctgtgaaa caggaagact gaaccacgta attaatatcc aaggtccctt
     2041 ccggctctaa aaggctatga ttctagatga gaagttatat caagaaagat gtggccaatc
     2101 agattgagtc atccaggcat acctttttag cttctgtttg tggagttgtc tccagataag
     2161 aggagatgtg ccttcccaat aactcttttt ttttttcctt tcagaacatt ttccagatgg
     2221 cgaggtcaca gcagagagat gtggccacct agcctttcct tatccccttc ccttcccttc
     2281 acccccatcc tcttactcct ttcatgtccc atttcagaca gagtaaccat taacaaaaaa
     2341 gaagagaaaa agttaaagtc gttatattca aaagccctaa actaaatatt attaataacc
     2401 ccctctgaat ttcatgtctc tggaattgag gtggtagtga acagcagatc ggtcagcacc
     2461 agaagtcaac tgagttaagg caggaaaaga aataagccca accaacttgc caaaggtatc
     2521 tttgtccttt cacctgggcc tcataccaac agcctctcct tgtactatat ttttaaaact
     2581 ggaactatga acttcatcca tttgcactgt tcagacatat atatgtatgt atgtaaaaat
     2641 tatatataca caaattagct gcacgtatat acatatatat atttcttttt aaatttcata
     2701 ttgatggcag tacctttttt agcttgtgtt tttacacacc tttcactaga atccatgacc
     2761 tccctcgtgc tctctttctt ttgaaacaaa ctttaaaaag gaaaaaaaag cattttacag
     2821 ggaaaaatac ctctcctcat gaaggacttg aaaagtttac aacctgcttg gatttttgcc
     2881 cctttttttg tattgagtat agattccggc tcatgggttg ccatagagtc taggaacaag
     2941 gagtatagtt tctttatctt ccaagagggt gctggggagg agaaagaggt gtgtttctca
     3001 aggttaacag gctgtagttc tgcagggaga gcctgaagtc ctggtatggg ctcttgattc
     3061 tgtgacaatt tttttgatcc atctatttct ctcactcctg gctttctagc cacattctgc
     3121 acctccttcc tgctttccta gagcctcggt atgctttccc tcaaccgacc ctggctcagg
     3181 aggttgatgc catgggaacc tgaacctgaa acacttcatg gtagtaattt cctgttttcc
     3241 ttgccttttt tttttttttt tttttttttt tctgagacag ggtcttactc tgtcgcccag
     3301 actggaatgt ggtggcatga acatagctca ctgttacctt gaattctggg ctcaggtgat
     3361 ccttccgcct caccctcctg agtagctggg actacaggtg tgcaccacca cacctggcta
     3421 attcttctta aaattttttt gtagagacag ggtctcacta tgttgcccag gctggtctca
     3481 aactcctggc ctcaggtgat cctcttgtct cagcctccca aagtgctggg attacaggca
     3541 tgagccactg tgtccttccc tgcctttttt gcagcaggga tagtactcag gaccagagtt
     3601 aagctgatac cttaggcaca caggttggac ttacatagag gaaagaaagc aagaaatgcc
     3661 ctatgtacat gaggttttac ctcctccatt cctgaccaat aaccacccat aactacggca
     3721 ttctctgtga cttccttaaa cagcagtgat gggaagggat ccaatagtat cttcaaggcc
     3781 ttggggaaac ttgcagtggg tcagtggtct gtgccaacca aacgatagcc ccatccaagc
     3841 cagctgagaa cctaggaagg agtagtagga atatggttga ttagattgga tctcccaagt
     3901 tttaattgaa aggagactga acgaaaacct ttctgctttc tgtccgttaa agagctcctc
     3961 atctgatctt gcagctagac cctttgagac ttaagagctg catcccagga tcagaagcca
     4021 gggctaattg gggtaggaca atattcccag cccctaagct ctgtagataa tgcataagaa
     4081 gcaccaagtc aggctcagat gcaactaaaa cacatctttg agccttttct ttttcccttc
     4141 tcccctttct aaacaaaaac cttcctagga tggcatcttt tgctctaact gggagacagt
     4201 cataattggt tgtagtcaat tctactaagc agtgttgggg tggttggaaa gtctcttttt
     4261 tgtaatttgt ttttgcaaat cattgtgagg ccactttttc tttctttctt tctttctttc
     4321 tttctttctt tctttctttc gttctttcgt tctttcgttc tttctttctt tctttctttc
     4381 tctttctttc ttttgctttc cttctttcat ctcttttttg taatttgttg ttgcaaatca
     4441 ttgtgaggcc acttttcttt ccccttcctt ccttcctttt tttctgtttt tttttttttt
     4501 ttttcccaga gtcttgctct gtcgcccagg ttggagtgca gtggcacgat ctcggctcac
     4561 tgcaccctct gcctcttggg ttcaagcgat tctcctgcct cagcctccca agtagctggg
     4621 attacaggca tacaccacca cgccccacta attttttgta tttttggtag ggcggggttt
     4681 caccatgatg gccaggttgg ttttgaactc ctgacctcaa gtaatctgcc cacctcggcc
     4741 tcccaaagtg ctaggattac aggagtgagc cactgcgcct ggcccacttt tctttctttc
     4801 cttcttattt tgttatgctg gcagccattt gcccctgcat ggtatgggat caaagaggac
     4861 agcctttcct ccctcacctt ctccaaatct aggtgaaatc acagagtaca aaacgtgaga
     4921 atgctgaatg tgtaaagttg cagagggatc cctaatttga agactttgac acagaactaa
     4981 cttcttttga cttaaatgaa tttaaaatga gccaaaggac cctgaaaaga agacatgttg
     5041 atttcccact cctagatgct aaagagactt ggcaccagct ttgttcaaac tgtaaaaata
     5101 gcaatttgcc cctactcgct cagagtggga cagtagtgaa cagagctggg attccatgcg
     5161 acagcttgaa tgctgacctt cagacatgag acatagggat ttggaggccc cttagaatgg
     5221 gtagatggtg ttatgttccc tttctggcat agcattcact tggtgctttg gagattaggt
     5281 gagggcccta taggtagttg gcctgttggc agaatttatt taggaacagc ccttttgaaa
     5341 gtgtcccagt aacaacgcac ccagctgcag caaggaggtg gggaaggagg gcaccccaaa
     5401 ggacagcgcc ttcttctctt ccacccatgc acggccttgg gtgatggagg cgggttccct
     5461 gtggctgcgt ggatcccata ggatcaagcc cttctttgca tgaagcagtg ttgtgactct
     5521 tctctctccc cttcctctgc acttcctttc tgtaatccct actgttcttc ttagtcccag
     5581 cttctgccca gggaggcttc tacccagact tcttttgcaa tttgtccctg ggaagagggg
     5641 gtctcccagt gcccccagct tcatcccagc agaaccagca ggatcctcct ggtctctcac
     5701 tggccttcct ccacacttgg tttctatcct caggggtaga agctcagagc tttttatggc
     5761 ccaggagaaa atgtagaccc tgagaaacct gtccctgcag aaaggttccc ttgggccatg
     5821 ctttgggccc tctgctcttt atatgtttat tctattctcc atttttccac cccgtcctta
     5881 ccctaggcct aaacacaggt acagatatgt gcatgctcag ggcagctcct aggcctggac
     5941 tgagctctca ggggggaatt agataaatat tccaacatcc tcatgcctgg cccatttagt
     6001 ttcatccttt agttacccag gccagtagct ttgggttatc ccttcctgta gctccaaacc
     6061 cagcacttgg agcagcaaaa tagggcactg acaggagatg aaactctctc ctatctcaga
     6121 atttgccaac ttctgggctg ggctcctagg aggtagtttt cttgaagggg actgcatcct
     6181 agttgacctg aattttccag accaggaggg actgctgtgc tctcccttct cgccatcata
     6241 ctgtttggct agattcattc agcagtagaa gctgtttgat ctgttgaccc cagcatactg
     6301 ctgtttcttc accagcttca ttgtgtcaca gtagcttcct ttgggaggat gatgtgatag
     6361 aacactcaga gagagggagg gagaagagag atagtgggta tgcttctcta gctccccatc
     6421 ttccaggtcc acctcttgac ttcctgttcc cctaaacctg agcacatcac gccaggcctc
     6481 tttgctgcca ggacagcatc agctcactcc tcagcaataa tctagggtat gtgggaaggt
     6541 cagggctgtg gtaaggaata gaatcaaaga ggggagtgat acggggtggg ggcacttggc
     6601 cgcctgctaa acttggacat taattttata tcatgacccc cttttaagcc agtgagctgg
     6661 gcttcagttt ttcccaggcc atgcacattt aatttatttc agagaaactc taattgtatt
     6721 ttcactgcag tatcttgtat tttttatttg tgatttaaga aatgtgaaga gaaaatacac
     6781 agacacaata atggctaaca ttgtttcttt cattccttgt tctagagcta accactctaa
     6841 aattgtttgg taatgtcact tagtgtaatt aattgtaaca tattctttta aataaattga
     6901 tttattgatc aaaca
//
