LOCUS       XM_017008997            2840 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens sorting nexin 18 (SNX18), transcript
            variant X3, mRNA.
ACCESSION   XM_017008997
VERSION     XM_017008997.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000005.10) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_017008997.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="5"
     gene            1..2840
                     /gene="SNX18"
                     /gene_synonym="SH3PX2; SH3PXD3B; SNAG1"
                     /note="sorting nexin 18; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 28 long SRA reads, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 38 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:112574"
                     /db_xref="HGNC:HGNC:19245"
     CDS             195..1820
                     /gene="SNX18"
                     /gene_synonym="SH3PX2; SH3PXD3B; SNAG1"
                     /codon_start=1
                     /product="sorting nexin-18 isoform X2"
                     /protein_id="XP_016864486.1"
                     /db_xref="GeneID:112574"
                     /db_xref="HGNC:HGNC:19245"
                     /translation="MALRARALYDFRSENPGEISLREHEVLSLCSEQDIEGWLEGVNS
                     RGDRGLFPASYVQVIRAPEPGPAGDGGPGAPARYANVPPGGFEPLPVAPPASFKPPPD
                     AFQALLQPQQAPPPSTFQPPGAGFPYGGGALQPSPQQLYGGYQASQGSDDDWDDEWDD
                     SSTVADEPGALGSGAYPDLDGSSSAGVGAAGRYRLSTRSDLSLGSRGGSVPPQHHPSG
                     PKSSATVSRNLNRFSTFVKSGGEAFVLGEASGFVKDGDKLCVVLGPYGPEWQENPYPF
                     QCTIDDPTKQTKFKGMKSYISYKLVPTHTQVPVHRRYKHFDWLYARLAEKFPVISVPH
                     LPEKQATGRFEEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFLTCPSSTDEKAWKQ
                     GKRKAEKDEMVGANFFLTLSTPPAAALDLQEVESKIDGFKCFTKKMDDSALQLNHTAN
                     EFARKQVTGFKKEYQKVGQSFRGLSQAFELDQQAFSVGLNQAIAFTGDAYDAIGELFA
                     EQPRQDLDPVMDLLALYQGHLANFPDIIHVQKG"
     polyA_site      2840
                     /gene="SNX18"
                     /gene_synonym="SH3PX2; SH3PXD3B; SNAG1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agtcggcgct gcgaagtgga ggcgctgcga gcggagccgc gcggagggcg cgaccggctg
       61 gtccgggcag cgtgggtttg ccgccttcgg ggctccagtc cgcgcgccag ggctcgagca
      121 gtaccgcggg cccctcaggt gggcctcggc tcgggacgcc gggagtcggg accgccagtc
      181 ggggcgccgg gaccatggcg ctgcgcgccc gggcgctgta cgacttcagg tcggagaacc
      241 caggagagat ctcgctgcga gagcacgagg tgctgagcct gtgcagcgag caggacatcg
      301 agggctggct cgagggggtc aacagccgcg gcgaccgcgg cctcttcccg gcctcctatg
      361 tgcaggtgat ccgcgccccc gagcctggcc cggcgggaga cggcggcccg ggcgccccgg
      421 cccgctacgc caatgtgccc cccgggggct tcgagcccct gcctgtcgcg ccccccgcct
      481 ccttcaagcc gccgcctgac gccttccagg cgctgctgca gccacagcag gcgccgcctc
      541 cgagcacctt ccagccgccc ggcgcgggct tcccgtacgg cgggggcgcc ctgcagccgt
      601 cgcctcagca gctctacggc ggctaccagg ccagccaagg cagcgatgat gactgggacg
      661 acgagtggga cgacagctcc acggtggcgg acgagccggg cgctctgggc agcggagcat
      721 acccggacct cgacggctcg tcttcggcgg gtgtgggcgc agccggccgc taccgcctgt
      781 ccacgcgctc cgacctgtcc ctgggttccc gcggcggctc ggtccccccg cagcaccacc
      841 cgtcggggcc caagagctcg gccaccgtga gccgcaacct caatcgcttc tccaccttcg
      901 tcaagtccgg cggggaggcc ttcgtgctgg gggaggcgtc aggcttcgtg aaggacgggg
      961 acaagctgtg cgtggtgctg gggccctatg gccccgagtg gcaggagaac ccctacccgt
     1021 tccagtgcac catcgacgac cccaccaagc agaccaagtt caagggcatg aagagctaca
     1081 tctcctacaa gctggtgccc acgcacacgc aggtgccggt gcatcggcgc tacaagcact
     1141 tcgactggct gtacgcgcgc ctggcggaga agttcccggt catctccgtg ccccacctgc
     1201 ccgagaagca ggccaccggc cgcttcgagg aggacttcat ctctaagcgc aggaagggcc
     1261 tgatctggtg gatgaaccac atggccagcc acccagtgct ggcgcagtgc gacgtcttcc
     1321 agcacttcct gacgtgcccc agcagcaccg acgagaaagc ctggaagcag ggcaagagga
     1381 aggccgagaa ggacgagatg gtgggcgcca acttcttcct gacccttagc acgccccccg
     1441 ccgctgccct tgacctgcag gaggtggaga gcaagatcga cggcttcaag tgcttcacca
     1501 agaagatgga cgacagcgcg ctgcagctca accacacggc caacgagttc gcgcgcaagc
     1561 aggtgaccgg cttcaaaaag gagtatcaga aggtgggcca gtccttccgc ggcctcagcc
     1621 aggcctttga gctggaccag caggccttct cggtgggcct gaaccaggct atcgccttca
     1681 ccggagatgc ctatgacgcc attggcgagc tcttcgcgga gcagcccagg caggacctgg
     1741 atcccgtcat ggacctatta gcgctgtatc aggggcatct ggctaacttc ccggacatca
     1801 tccacgttca gaaaggttag tccctctaaa catttaccca acttttggtc tttatgataa
     1861 tgaagacatc tgacctctgg ttggccattg gattgttgaa gaggacttcg ggagaccagg
     1921 tggttcactg ggtcagttgg ctcaattcag aggcattcac tcattcttgc tcttcgtccc
     1981 accccagagt gtcctgtaat ctgaatgaac tctccctctc tgatctaagc atttttcgat
     2041 ttgcaatttt catggagata attctaggtt tatatgcaat tttaagaaat cagacggcta
     2101 gatctcgtgt attcttcacc cagtttctcc caatgtaaca ttttacaaaa cattagtata
     2161 atatcacaac caggagattg acattactac aatccatcca tctttttcag attttcccag
     2221 ctttatttgt actcacgtgt gtgtatgtgt gaaaattgca cagttccata aaatgttatc
     2281 acctgtatag gtttgtgtat ccaccaccac agtcaagata ctgacagttc caacatcaca
     2341 aggatccctt attttgccca tttacaacca ctcctacctt cctcacccac cccatcccta
     2401 taccctggca accattaaca aatatgtcct ccagttttga aatgtcattt caaaaatgtt
     2461 atataaatgg atgcatacag tatgcattct tttgagaaag gcctttgtgt ggttcctggg
     2521 taataataat gagtctgact ccattttctg atgtttgcta gtagctttta taccccactc
     2581 ttctcatttc ccattttgcc ccacatctgg gcaagctgat aagaaagcct gggttcttct
     2641 gttggcactg agattccaac catgtgggcc cccgcctgtg tgcaggaacc ctcaccccag
     2701 ccccactccc caacgcctaa gaaaacttca agtcagtttt ctttccctgc tctcttacgc
     2761 tgtttttgga cctgtttggg aagctttccc agctgtctcc agaaaacctc attatgtgcg
     2821 taataaacct tttcacactc
//
