LOCUS       XM_011529008            2240 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens syntrophin alpha 1 (SNTA1), transcript
            variant X3, mRNA.
ACCESSION   XM_011529008
VERSION     XM_011529008.2
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000020.11) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_011529008.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="20"
     gene            1..2240
                     /gene="SNTA1"
                     /gene_synonym="dJ1187J4.5; LQT12; SNT1; TACIP1"
                     /note="syntrophin alpha 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 66 ESTs, 15 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 37 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:6640"
                     /db_xref="HGNC:HGNC:11167"
                     /db_xref="MIM:601017"
     CDS             144..1631
                     /gene="SNTA1"
                     /gene_synonym="dJ1187J4.5; LQT12; SNT1; TACIP1"
                     /codon_start=1
                     /product="alpha-1-syntrophin isoform X3"
                     /protein_id="XP_011527310.1"
                     /db_xref="GeneID:6640"
                     /db_xref="HGNC:HGNC:11167"
                     /db_xref="MIM:601017"
                     /translation="MASGRRAPRTGLLELRAGAGSGAGGERWQRVLLSLAEDVLTVSP
                     ADGDPGPEPGAPREQEPAQLNGAAEPGAGPPQLPEALLLQRRRVTVRKADAGGLGISI
                     KGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQVLKKTGK
                     EVVLEVKYMKDVSPYFKNSTGGTSVGWDSPPASPLQRQPSSPGPTPRNFSEAKHMSLK
                     MAYVSKRCTPNDPEPRYLEICSADGQDTLFLRAKDEASARSWATAIQAQVNTLTPRVK
                     DELQALLAATSTAGSQDIKQIGWLTEQLPSGGTAPTLALLTEKELLLYLSLPETREAL
                     SRPARTAPLIATRLVHSGPSKGSVPYDAELSFALRTGTRHGVDTHLFSVESPQELAAW
                     TRQLVDGCHRAAEGVQEVSTGVLGGSGSVPLPARGMGVPAACLCTSTRASHCGRLSQV
                     QPELCSCDSPSRSCRCLQMTVPVSFSWILEVLKARSWTCTRVPKP"
     polyA_site      2240
                     /gene="SNTA1"
                     /gene_synonym="dJ1187J4.5; LQT12; SNT1; TACIP1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agagctcctc ccccagcggc cggggtaggg tggcggctgg cccagccggg cccccgctgc
       61 cctctgccct gggcgcttgg tcggagcggg ctgggcaaag cgggacaggg cgagcgcggc
      121 ggcccggggg ctcggaggcg aagatggcgt ccggcaggcg cgccccgcgc accgggctgc
      181 tggagctgcg cgccggggcg ggctcggggg ccggcggcga gcgatggcag cgggtgctgc
      241 tgagtctggc ggaggacgtg ctgaccgtga gccccgccga cggcgaccct ggtcccgagc
      301 ccggcgctcc gcgggagcag gagcccgcgc agctcaacgg cgccgcggag ccgggcgccg
      361 ggcccccgca gctgccagag gcgctactgc tccagcggcg ccgcgtgacg gtgcgcaagg
      421 ccgacgccgg tgggctgggc atcagcatca aaggcggccg ggagaacaag atgcctattc
      481 tcatttccaa gatcttcaag ggattggcag ctgaccagac agaggccctt tttgtggggg
      541 atgccatcct gtctgtgaat ggggaagact tgtcctctgc tacccatgat gaggcggtgc
      601 aggtcctcaa gaagacaggc aaggaggtgg tgctggaggt caagtatatg aaggacgtct
      661 caccgtattt caagaactct actggtggga cctcggtcgg ctgggactca cctcctgcct
      721 caccccttca gcggcagcct tcctcccctg gccccacacc ccggaacttc agcgaggcca
      781 aacacatgtc cttgaagatg gcatatgtct cgaagaggtg cacccccaat gacccggagc
      841 ccaggtatct ggagatctgc tcggcagatg gtcaagacac cctcttcctg agggccaagg
      901 atgaggctag tgcgaggtcg tgggcgactg ccatccaagc ccaggtcaat actctgacgc
      961 cgcgggtcaa ggatgagctg caggcactgt tggcagccac cagcacagct gggagccagg
     1021 acatcaagca gattggctgg ctaactgagc agctgcccag tgggggcaca gcccccaccc
     1081 tggccctgct aactgaaaag gaactgctcc tctacttgtc tctccccgag acccgcgagg
     1141 ccctgagccg gccagcccgt actgccccac tcatcgccac cagactggtg cactcaggcc
     1201 cctccaaggg ctcagtgccc tacgatgcag agctctcttt tgccctgcgc acgggcacgc
     1261 gtcacggtgt ggacactcac ctgttcagcg tggagtcacc gcaggagctg gctgcctgga
     1321 cccgccagct tgtggatggc tgtcaccggg ccgccgaggg tgtgcaggag gtgtctacag
     1381 gtgtgctggg aggatctggg agtgtccctc tgcctgcacg tggaatgggc gtccctgcag
     1441 cctgtctgtg cacatcgaca agggcttcac actgtgggcg gctgagccag gtgcagcccg
     1501 agctgtgctc ctgcgacagc ccttcgagaa gctgcagatg tcttcagatg acggtgccag
     1561 tctccttttc ctggattttg gaggtgctga aggcgagatc ctggacctgc actcgtgtcc
     1621 caaaaccata gtcttcatca tccactcctt cctgtcggcc aaagtcaccc gcctcgggct
     1681 gttggcctag aagtcgccgg atgcactagc cctgaagagg ggtgtccatg acatggcctg
     1741 agctgggcct ccaccgactg cctgctcacc cctgggctga gggaagggag aggagaggaa
     1801 caagggcctc cgaaacccca accctgaggg agactggatt ggtcttgggg cccaggaccc
     1861 agacgcagga cagagtggac tctgcctgtg atggggtggc cttcctgctg cccccctcca
     1921 ccagtgcctt ttgcagagag atattttgtg tacacagaag ccattccgag tctgggacct
     1981 gcccctgtgc ggatcctgac cccagccaac agctgagctg ccgggcctcc tcgaggcccc
     2041 taagccaccc ccagaggtcc catctgaagc tggagtaccc tggggtcagc agcaagagaa
     2101 agaagaggag attttctgtt tgtttttccc ctcagccctg ccaccgtggg gagtctggtt
     2161 tttctcttca tcctgtctct ctcctcctta ctcttggata aataaacagc ctgtgagcac
     2221 acaggcagcc cggcccagtg
//
