LOCUS       XM_047417924            4833 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens synuclein alpha interacting protein
            (SNCAIP), transcript variant X25, mRNA.
ACCESSION   XM_047417924
VERSION     XM_047417924.1
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000005.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4833
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="5"
     gene            1..4833
                     /gene="SNCAIP"
                     /gene_synonym="Sph1; SYPH1"
                     /note="synuclein alpha interacting protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 58 ESTs, 72 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 22 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:9627"
                     /db_xref="HGNC:HGNC:11139"
                     /db_xref="MIM:603779"
     CDS             1351..4110
                     /gene="SNCAIP"
                     /gene_synonym="Sph1; SYPH1"
                     /codon_start=1
                     /product="synphilin-1 isoform X8"
                     /protein_id="XP_047273880.1"
                     /db_xref="GeneID:9627"
                     /db_xref="HGNC:HGNC:11139"
                     /db_xref="MIM:603779"
                     /translation="MEAPEYLDLDEIDFSDDISYSVTSLKTIPELCRRCDTQNEDRSV
                     SSSSWNCGISTLITNTQKPTGIADVYSKFRPVKRVSPLKHQPETLENNESDDQKNQKV
                     VEYQKGGESDLGPQPQELGPGDGVGGPPGKSSEPSTSLGELEHYDLDMDEILDVPYIK
                     SSQQLASFTKVTSEKRILGLCTTINGLSGKACSTGSSESSSSNMAPFCVLSPVKSPHL
                     RKASAVIHDQHKLSTEETEISPPLVKCGSAYEPENQSKDFLNKTFSDPHGRKVEKTTP
                     DCQLRAFHLQSSAAESKPEEQVSGLNRTSSQGPEERSEYLKKVKSILNIVKEGQISLL
                     PHLAADNLDKIHDENGNNLLHIAASQGHAECLQHLTSLMGEDCLNERNTEKLTPAGLA
                     IKNGQLECVRWMVSETEAIAELSCSKDFPSLIHYAGCYGQEKILLWLLQFMQEQGISL
                     DEVDQDGNSAVHVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRY
                     LVVVETCMSLASQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGKSLPSSPSSPSS
                     PASRKSQWKSPDADDDSVAKSKPGVQEGIQVLGSLSASSRARPKAKDEDSDKILRQLL
                     GKEISENVCTQEKLSLEFQDAQASSRNSKKIPLEKRELKLARLRQLMQRSLSESDTDS
                     NNSEDPKTTPVRKADRPRPQPIVESVESMDSAESLHLMIKKHTLASGGRRFPFSIKAS
                     KSLDGHSPSPTSESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSA
                     LKSPSSKRRTSQNLKLRVTFEEPVVQMEQPSLELNGEKDKDKGRTLQRTSTSNESGDQ
                     LKRPFGAFRSIMETLSGNQNNNNNYQAANQLKTSTLPLTSLGRKTDAKGNPASSASKG
                     KNKAA"
ORIGIN      
        1 aaaagagtgc ctgagagtgc cagaggcttg gtggaagggc agacgagaga agaggaggca
       61 ttgtattggc cactgggaca actgcagact cactcttacc tgtaaagaag cagttaatgt
      121 tggggaatgt agtcaggatt ggaaaaccac ggggatttct gcacattata attgagaatg
      181 taaatattct taaagtggca ccctgaaaga gacaagcatt gaaaccagac aaaataaatt
      241 ggatcatgaa cagaatgaga catcttaaag gagatagcat gtggaggcct gctgggaagt
      301 agaggcaaat tccagatgcc taggagcctt agtctaaggt ggggccatcc aacccacaga
      361 aataaatatg ggcagtggcc caagacttcc tataatgagc tgcacctgtt gtaagtcttg
      421 tgttcttgcc tatagaataa agaacctcac taccatcctg caagtgcaaa ttgaaagatt
      481 cctgttgtga tgccatgagt tattatccgc tggttatatt ctattggaat ggctacactc
      541 aactggatat tgctgtctat attgttggag cacctcaaac aggggtgcaa tggttatttg
      601 ttaatttact taattaagac atgttcatcc acattttata gtttcattta tttaaagatc
      661 catttggtcc ccagcttcga tgcatgtttc tctgcttcat ctccccatat ttccatgttc
      721 ctgctgatgt ttataccata tcctggcacc cagcatcatc tgtgtgttgt tcaccaaggc
      781 cgtgggaaca gagtctgtaa atcaatagtt catcacggag tacagatttc atgaaaagaa
      841 attggattgg aagaaagtct cctagtgaac acgctagtat ccaaagagtc tggattgtat
      901 cagaatccat cacagtagga gagaatgttg ttttgagtaa tttccaagca gagtacatat
      961 attttcctct gaaaatcttt gtaaattgaa gaaaagtgac atttttatac caagcaattt
     1021 gtttgataac ctattttcag atttctacaa ataataaaat ttctgatttt aaatattttt
     1081 tacaaataca agttggtttt cttttcattg taagccttac tgtgatttca gaagaatttt
     1141 taacatttgc taaatggata atctcattta aacatggaag taacatccta atcctttctt
     1201 ggatggactc tgtatctatt gtaattaaga ctttaaaaat ggtatataca tatgggaaaa
     1261 aaaggagagg aaacaggaaa attaaatcaa gtgatgggtt tgaggaattt ataagtattt
     1321 gaccgtactc aaaatgtgca aggaagaata atggaagccc ctgaatacct tgatttggat
     1381 gaaattgact ttagtgatga catatcttat tcagtcacat cactcaagac gatcccagaa
     1441 ctgtgccgaa gatgtgatac gcaaaacgaa gacagatcag tttctagctc tagctggaat
     1501 tgtggcatct caactcttat tacaaacacg caaaagccca caggaatcgc tgatgtgtac
     1561 agtaagttcc gcccagtgaa gcgggtttcg ccactgaaac atcagccaga gactctggag
     1621 aacaatgaaa gtgatgacca aaagaaccag aaagtggttg agtaccagaa agggggtgag
     1681 tctgacctgg gcccccagcc tcaggagctt ggccctggag atggagtggg cggcccacca
     1741 ggtaagagct ctgagcccag cacatcgctg ggtgaactgg agcactacga cctcgacatg
     1801 gatgagattc tggatgtgcc ttatattaaa tccagtcagc agcttgcctc ttttaccaag
     1861 gtgacttcag aaaaaagaat tttgggctta tgcacaacca tcaatggcct ttctggcaaa
     1921 gcctgctcta caggaagttc tgagagctca tcatccaaca tggcaccatt ttgtgttctt
     1981 tctcccgtga aaagccctca cttgagaaaa gcatcagctg tcatccacga ccagcacaag
     2041 ctgtccactg aagaaaccga gatctcacct cctctggtta aatgtggctc tgcatatgag
     2101 cctgaaaacc agagtaaaga cttcctaaac aagacattta gtgatcctca tggtcgaaaa
     2161 gttgagaaga caacaccaga ctgccagctc agggccttcc acctacaatc ctcagcagca
     2221 gaatccaaac cagaagagca ggtcagtggc ctaaaccgga ccagctccca aggcccagaa
     2281 gaaaggagtg agtatctgaa aaaagtgaaa agcatcttga acattgttaa agaaggacag
     2341 atctctctcc tgccacacct agctgcagac aatctagaca aaattcacga cgaaaatgga
     2401 aacaatctat tacatattgc ggcgtcacag ggacacgcag agtgtctaca gcacctcact
     2461 tctttgatgg gagaagactg cctcaatgag cgcaacactg agaagttgac tccagcaggc
     2521 ctggccatta agaatggtca gttggagtgc gtacgctgga tggtgagcga aacagaagcc
     2581 attgcagaac tgagttgttc taaggatttt ccaagcctta ttcattacgc aggttgctat
     2641 ggccaggaaa agattcttct gtggcttctt cagtttatgc aagaacaggg catctcgttg
     2701 gatgaagtag accaggatgg caacagtgcc gttcacgtag cctcacagca tggctacctt
     2761 ggatgcatac agaccttggt tgaatatgga gcaaatgtca ccatgcagaa ccacgctggg
     2821 gaaaagccct cccagagcgc cgagcggcag gggcacaccc tgtgctccag gtacctggtg
     2881 gtggtggaga cctgcatgtc gctggcctct caagtggtga agttaaccaa gcagctaaag
     2941 gaacaaacag tagaacgtgt cacgctgcag aaccaactcc aacaatttct agaagcccag
     3001 aaatcagagg gcaagtcact cccttcttca cccagttcac catcctcacc tgcctccaga
     3061 aagtcccagt ggaaatctcc agatgcagat gatgattctg tagccaaaag caagccagga
     3121 gtccaagagg ggattcaggt tcttggaagc ctgtcagcct ccagccgggc tagacccaaa
     3181 gcaaaagatg aagattctga taaaatctta cgccagttat tgggaaagga aatctcagaa
     3241 aatgtctgca cccaggaaaa actgtccttg gaattccagg atgctcaggc ttcctctaga
     3301 aattctaaaa agatcccact ggagaagagg gaactgaagt tagccaggct gagacagctg
     3361 atgcagaggt cactgagtga gtctgacaca gactccaaca actctgagga ccccaagact
     3421 accccagtga ggaaggctga ccgaccaagg ccgcagccca ttgtagaaag cgtagagagt
     3481 atggacagcg cagaaagcct gcacctgatg attaagaaac acaccttggc atcaggggga
     3541 cgcaggtttc ctttcagcat caaggcctcc aaatccctgg atggccacag cccatctccc
     3601 acctcagaga gcagcgaacc agacttagaa tcccagtatc caggctcagg gagtattcct
     3661 ccaaaccagc cctctggtga ccctcagcag cccagccctg acagtactgc tgcccagaaa
     3721 gttgccacaa gtcccaagag tgccctcaag tctccatctt ccaagcgtag gacatctcag
     3781 aacttaaaac tgagagttac ctttgaggag cctgtggtgc agatggagca gcctagcctt
     3841 gaactgaatg gagaaaaaga caaagataag ggcaggactc tccagcggac ctccacaagt
     3901 aacgaatcgg gggatcaact gaaaaggcct tttggagcct ttcgatctat catggagaca
     3961 ctaagtggca accaaaacaa taataataac taccaggcag ccaaccagct gaaaacctct
     4021 acattgccct tgacctcact tgggaggaag acagatgcca agggaaaccc tgccagctcc
     4081 gctagcaaag gaaagaataa ggcagcataa tgacatcaat agaaaaatga agaaatccta
     4141 cagcataaag cacattgctg agccagagtc aaaagaactc ttcttgtaaa tcacttttta
     4201 aattttctct cactgatgcc ctttggaaat tattggaaat ttctggacta tcctctttgg
     4261 aaagagaacc atgaaaacaa tgcctcacca gcagaagaac agaatatcag gatgccttaa
     4321 atttatagta gtagactgta aaagattcat tttggggtga tatctgtata tataacttgt
     4381 ttttttaaaa gatgccgttt aaaagcatga ttgggaaaat gtatgttttt taagagtaga
     4441 ttgattcacc ctacccacag gacattcacc aagccactga taccatttta tatttcatca
     4501 attgcatgag tatttgctaa tgttgattga acctcccttt ccccataatg tgggcagatt
     4561 tggctcagct ccttcatgag atcaggtcag tggtattgtt tctgtcaaga gtgttttttc
     4621 tgtcatttct actttttgta taaaggaaat aaaacaatgt taacagccac ctataagctt
     4681 ggggcaccta ctttctaaca aatctgtgat gttctgattt ctaagggact ttgcaagtat
     4741 tttgattgct gatatttgat ttcaggaaca aactgctcag tttagcagtt ttcccatagg
     4801 cgtcaaataa aacattctat atttcattaa gta
//
