LOCUS       XM_011543737            3789 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens synuclein alpha interacting protein
            (SNCAIP), transcript variant X2, mRNA.
ACCESSION   XM_011543737
VERSION     XM_011543737.3
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000005.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_011543737.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3789
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="5"
     gene            1..3789
                     /gene="SNCAIP"
                     /gene_synonym="Sph1; SYPH1"
                     /note="synuclein alpha interacting protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 51 ESTs, 43 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:9627"
                     /db_xref="HGNC:HGNC:11139"
                     /db_xref="MIM:603779"
     CDS             95..3145
                     /gene="SNCAIP"
                     /gene_synonym="Sph1; SYPH1"
                     /codon_start=1
                     /product="synphilin-1 isoform X1"
                     /protein_id="XP_011542039.1"
                     /db_xref="GeneID:9627"
                     /db_xref="HGNC:HGNC:11139"
                     /db_xref="MIM:603779"
                     /translation="MEAPEYLDLDEIDFSDDISDNRSQGNRLQKLGLEDTDREDAMGF
                     GSHRAKLTVVAALGACHCPENEYSVTSLKTIPELCRRCDTQNEDRSVSSSSWNCGIST
                     LITNTQKPTGIADVYSKFRPVKRVSPLKHQPETLENNESDDQKNQKVVEYQKGGESDL
                     GPQPQELGPGDGVGGPPGKSSEPSTSLGELEHYDLDMDEILDVPYIKSSQQLASFTKV
                     TSEKRILGLCTTINGLSGKACSTGSSESSSSNMAPFCVLSPVKSPHLRKASAVIHDQH
                     KLSTEETEISPPLVKCGSAYEPENQSKDFLNKTFSDPHGRKVEKTTPDCQLRAFHLQS
                     SAAESKPEEQVSGLNRTSSQGPEERSEYLKKVKSILNIVKEGQISLLPHLAADNLDKI
                     HDENGNNLLHIAASQGHAECLQHLTSLMGEDCLNERNTEKLTPAGLAIKNGQLECVRW
                     MVSETEAIAELSCSKDFPSLIHYAGCYGQEKILLWLLQFMQEQGISLDEVDQDGNSAV
                     HVASQHGYLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRYLVVVETCMSLA
                     SQVVKLTKQLKEQTVERVTLQNQLQQFLEAQKSEGKSLPSSPSSPSSPASRKSQWKSP
                     DADDDSVAKSKPGVQEGIQVLGSLSASSRARPKAKDEDSDKILRQLLGKEISENVCTQ
                     EKLSLEFQDAQASSRNSKKIPLEKRELKLARLRQLMQRSLSESDTDSNNSEDPKTTPV
                     RKADRPRPQPIVESVESMDSAESLHLMIKKHTLASGGRRFPFSIKASKSLDGHSPSPT
                     SESSEPDLESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKSPSSKRRTS
                     QNLKLRVTFEEPVVQMEQPSLELNGEKDKDKGRTLQRTSTSNESGDQLKRPFGAFRSI
                     METLSGNQNNNNNYQAANQLKTSTLPLTSLGRKTDAKGNPASSASKGKNKAEMYSSCI
                     NLSSNMLIEEHLCNDTRHNDINRKMKKSYSIKHIAEPESKELFL"
ORIGIN      
        1 agtcagtccc ttcgcgctcc tgagccgccg gcgcgccggg cgccccggga atttataagt
       61 atttgaccgt actcaaaatg tgcaaggaag aataatggaa gcccctgaat accttgattt
      121 ggatgaaatt gactttagtg atgacatatc tgacaatagg agtcaaggga acaggctaca
      181 aaagcttgga ttggaggaca cagacaggga agatgcaatg ggctttggtt cccatagggc
      241 caaactgaca gtagttgctg ccctgggagc ttgccattgt cctgagaatg agtattcagt
      301 cacatcactc aagacgatcc cagaactgtg ccgaagatgt gatacgcaaa acgaagacag
      361 atcagtttct agctctagct ggaattgtgg catctcaact cttattacaa acacgcaaaa
      421 gcccacagga atcgctgatg tgtacagtaa gttccgccca gtgaagcggg tttcgccact
      481 gaaacatcag ccagagactc tggagaacaa tgaaagtgat gaccaaaaga accagaaagt
      541 ggttgagtac cagaaagggg gtgagtctga cctgggcccc cagcctcagg agcttggccc
      601 tggagatgga gtgggcggcc caccaggtaa gagctctgag cccagcacat cgctgggtga
      661 actggagcac tacgacctcg acatggatga gattctggat gtgccttata ttaaatccag
      721 tcagcagctt gcctctttta ccaaggtgac ttcagaaaaa agaattttgg gcttatgcac
      781 aaccatcaat ggcctttctg gcaaagcctg ctctacagga agttctgaga gctcatcatc
      841 caacatggca ccattttgtg ttctttctcc cgtgaaaagc cctcacttga gaaaagcatc
      901 agctgtcatc cacgaccagc acaagctgtc cactgaagaa accgagatct cacctcctct
      961 ggttaaatgt ggctctgcat atgagcctga aaaccagagt aaagacttcc taaacaagac
     1021 atttagtgat cctcatggtc gaaaagttga gaagacaaca ccagactgcc agctcagggc
     1081 cttccaccta caatcctcag cagcagaatc caaaccagaa gagcaggtca gtggcctaaa
     1141 ccggaccagc tcccaaggcc cagaagaaag gagtgagtat ctgaaaaaag tgaaaagcat
     1201 cttgaacatt gttaaagaag gacagatctc tctcctgcca cacctagctg cagacaatct
     1261 agacaaaatt cacgacgaaa atggaaacaa tctattacat attgcggcgt cacagggaca
     1321 cgcagagtgt ctacagcacc tcacttcttt gatgggagaa gactgcctca atgagcgcaa
     1381 cactgagaag ttgactccag caggcctggc cattaagaat ggtcagttgg agtgcgtacg
     1441 ctggatggtg agcgaaacag aagccattgc agaactgagt tgttctaagg attttccaag
     1501 ccttattcat tacgcaggtt gctatggcca ggaaaagatt cttctgtggc ttcttcagtt
     1561 tatgcaagaa cagggcatct cgttggatga agtagaccag gatggcaaca gtgccgttca
     1621 cgtagcctca cagcatggct accttggatg catacagacc ttggttgaat atggagcaaa
     1681 tgtcaccatg cagaaccacg ctggggaaaa gccctcccag agcgccgagc ggcaggggca
     1741 caccctgtgc tccaggtacc tggtggtggt ggagacctgc atgtcgctgg cctctcaagt
     1801 ggtgaagtta accaagcagc taaaggaaca aacagtagaa cgtgtcacgc tgcagaacca
     1861 actccaacaa tttctagaag cccagaaatc agagggcaag tcactccctt cttcacccag
     1921 ttcaccatcc tcacctgcct ccagaaagtc ccagtggaaa tctccagatg cagatgatga
     1981 ttctgtagcc aaaagcaagc caggagtcca agaggggatt caggttcttg gaagcctgtc
     2041 agcctccagc cgggctagac ccaaagcaaa agatgaagat tctgataaaa tcttacgcca
     2101 gttattggga aaggaaatct cagaaaatgt ctgcacccag gaaaaactgt ccttggaatt
     2161 ccaggatgct caggcttcct ctagaaattc taaaaagatc ccactggaga agagggaact
     2221 gaagttagcc aggctgagac agctgatgca gaggtcactg agtgagtctg acacagactc
     2281 caacaactct gaggacccca agactacccc agtgaggaag gctgaccgac caaggccgca
     2341 gcccattgta gaaagcgtag agagtatgga cagcgcagaa agcctgcacc tgatgattaa
     2401 gaaacacacc ttggcatcag ggggacgcag gtttcctttc agcatcaagg cctccaaatc
     2461 cctggatggc cacagcccat ctcccacctc agagagcagc gaaccagact tagaatccca
     2521 gtatccaggc tcagggagta ttcctccaaa ccagccctct ggtgaccctc agcagcccag
     2581 ccctgacagt actgctgccc agaaagttgc cacaagtccc aagagtgccc tcaagtctcc
     2641 atcttccaag cgtaggacat ctcagaactt aaaactgaga gttacctttg aggagcctgt
     2701 ggtgcagatg gagcagccta gccttgaact gaatggagaa aaagacaaag ataagggcag
     2761 gactctccag cggacctcca caagtaacga atcgggggat caactgaaaa ggccttttgg
     2821 agcctttcga tctatcatgg agacactaag tggcaaccaa aacaataata ataactacca
     2881 ggcagccaac cagctgaaaa cctctacatt gcccttgacc tcacttggga ggaagacaga
     2941 tgccaaggga aaccctgcca gctccgctag caaaggaaag aataaggcag aaatgtacag
     3001 cagctgcatc aatctttcct ctaacatgct gattgaagag catctgtgta acgacacacg
     3061 gcataatgac atcaatagaa aaatgaagaa atcctacagc ataaagcaca ttgctgagcc
     3121 agagtcaaaa gaactcttct tgtaaatcac tttttaaatt ttctctcact gatgcccttt
     3181 ggaaattatt ggaaatttct ggactatcct ctttggaaag agaaccatga aaacaatgcc
     3241 tcaccagcag aagaacagaa tatcaggatg ccttaaattt atagtagtag actgtaaaag
     3301 attcattttg gggtgatatc tgtatatata acttgttttt ttaaaagatg ccgtttaaaa
     3361 gcatgattgg gaaaatgtat gttttttaag agtagattga ttcaccctac ccacaggaca
     3421 ttcaccaagc cactgatacc attttatatt tcatcaattg catgagtatt tgctaatgtt
     3481 gattgaacct ccctttcccc ataatgtggg cagatttggc tcagctcctt catgagatca
     3541 ggtcagtggt attgtttctg tcaagagtgt tttttctgtc atttctactt tttgtataaa
     3601 ggaaataaaa caatgttaac agccacctat aagcttgggg cacctacttt ctaacaaatc
     3661 tgtgatgttc tgatttctaa gggactttgc aagtattttg attgctgata tttgatttca
     3721 ggaacaaact gctcagttta gcagttttcc cataggcgtc aaataaaaca ttctatattt
     3781 cattaagta
//
